Search of human proteins with 239754048

Search of human proteins with 239754048

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239754048 PREDICTED: hypothetical protein XP_002345860 [Homo
sapiens]
         (119 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754048 PREDICTED: hypothetical protein XP_002345860 [Homo ...   255   5e-69
gi|239748577 PREDICTED: hypothetical protein XP_002346733 [Homo ...   255   5e-69
gi|239742594 PREDICTED: hypothetical protein XP_002342569 [Homo ...   255   5e-69
gi|25121984 acidic epididymal glycoprotein-like 1 isoform 2 prec...    30   0.42 
gi|25121982 acidic epididymal glycoprotein-like 1 isoform 1 prec...    30   0.42 
gi|209954788 activating transcription factor 6 beta isoform b [H...    29   0.94 
gi|20631977 activating transcription factor 6 beta isoform a [Ho...    29   0.94 
gi|213021162 hypothetical protein LOC163882 isoform 2 [Homo sapi...    28   2.1  
gi|213021160 hypothetical protein LOC163882 isoform 1 [Homo sapi...    28   2.1  
gi|21359974 vitrin [Homo sapiens]                                      27   3.6  
gi|51702222 SPT2, Suppressor of Ty, domain containing 1 [Homo sa...    27   4.7  
gi|169217460 PREDICTED: similar to Mucin-6, partial [Homo sapiens]     26   6.1  
gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens]     26   6.1  
gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens]     26   6.1  
gi|21359924 transmembrane protein 48 [Homo sapiens]                    26   6.1  
gi|13899303 cysteine-rich secretory protein LCCL domain containi...    26   7.9  
gi|89941470 ankyrin repeat domain 34 [Homo sapiens]                    26   7.9  

>gi|239754048 PREDICTED: hypothetical protein XP_002345860 [Homo
           sapiens]
          Length = 119

 Score =  255 bits (652), Expect = 5e-69
 Identities = 119/119 (100%), Positives = 119/119 (100%)

Query: 1   MYCTTVAPWKVMGWLMPVKTNDGPPGVCSESGTLSSLSLHNWQESILNLHTAIRMNVTPT 60
           MYCTTVAPWKVMGWLMPVKTNDGPPGVCSESGTLSSLSLHNWQESILNLHTAIRMNVTPT
Sbjct: 1   MYCTTVAPWKVMGWLMPVKTNDGPPGVCSESGTLSSLSLHNWQESILNLHTAIRMNVTPT 60

Query: 61  DSRTGPRSWVHSKWETPWYLIQPMTVNVIPTSPRKMPEKSKVAPALSSSDTWMSAVLGV 119
           DSRTGPRSWVHSKWETPWYLIQPMTVNVIPTSPRKMPEKSKVAPALSSSDTWMSAVLGV
Sbjct: 61  DSRTGPRSWVHSKWETPWYLIQPMTVNVIPTSPRKMPEKSKVAPALSSSDTWMSAVLGV 119


>gi|239748577 PREDICTED: hypothetical protein XP_002346733 [Homo
           sapiens]
          Length = 119

 Score =  255 bits (652), Expect = 5e-69
 Identities = 119/119 (100%), Positives = 119/119 (100%)

Query: 1   MYCTTVAPWKVMGWLMPVKTNDGPPGVCSESGTLSSLSLHNWQESILNLHTAIRMNVTPT 60
           MYCTTVAPWKVMGWLMPVKTNDGPPGVCSESGTLSSLSLHNWQESILNLHTAIRMNVTPT
Sbjct: 1   MYCTTVAPWKVMGWLMPVKTNDGPPGVCSESGTLSSLSLHNWQESILNLHTAIRMNVTPT 60

Query: 61  DSRTGPRSWVHSKWETPWYLIQPMTVNVIPTSPRKMPEKSKVAPALSSSDTWMSAVLGV 119
           DSRTGPRSWVHSKWETPWYLIQPMTVNVIPTSPRKMPEKSKVAPALSSSDTWMSAVLGV
Sbjct: 61  DSRTGPRSWVHSKWETPWYLIQPMTVNVIPTSPRKMPEKSKVAPALSSSDTWMSAVLGV 119


>gi|239742594 PREDICTED: hypothetical protein XP_002342569 [Homo
           sapiens]
          Length = 119

 Score =  255 bits (652), Expect = 5e-69
 Identities = 119/119 (100%), Positives = 119/119 (100%)

Query: 1   MYCTTVAPWKVMGWLMPVKTNDGPPGVCSESGTLSSLSLHNWQESILNLHTAIRMNVTPT 60
           MYCTTVAPWKVMGWLMPVKTNDGPPGVCSESGTLSSLSLHNWQESILNLHTAIRMNVTPT
Sbjct: 1   MYCTTVAPWKVMGWLMPVKTNDGPPGVCSESGTLSSLSLHNWQESILNLHTAIRMNVTPT 60

Query: 61  DSRTGPRSWVHSKWETPWYLIQPMTVNVIPTSPRKMPEKSKVAPALSSSDTWMSAVLGV 119
           DSRTGPRSWVHSKWETPWYLIQPMTVNVIPTSPRKMPEKSKVAPALSSSDTWMSAVLGV
Sbjct: 61  DSRTGPRSWVHSKWETPWYLIQPMTVNVIPTSPRKMPEKSKVAPALSSSDTWMSAVLGV 119


>gi|25121984 acidic epididymal glycoprotein-like 1 isoform 2
          precursor [Homo sapiens]
          Length = 178

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 39 LHNWQESILNLHTAIRMNVTPTDSRTGPRSW 69
          L N QE I+N+H A+R  V P  S     SW
Sbjct: 37 LPNVQEEIVNIHNALRRRVVPPASNMLKMSW 67


>gi|25121982 acidic epididymal glycoprotein-like 1 isoform 1
          precursor [Homo sapiens]
          Length = 249

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 39 LHNWQESILNLHTAIRMNVTPTDSRTGPRSW 69
          L N QE I+N+H A+R  V P  S     SW
Sbjct: 37 LPNVQEEIVNIHNALRRRVVPPASNMLKMSW 67


>gi|209954788 activating transcription factor 6 beta isoform b [Homo
           sapiens]
          Length = 700

 Score = 28.9 bits (63), Expect = 0.94
 Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 26/121 (21%)

Query: 8   PWKVMGWLMPVKTNDGPPGVCSESGTLSSLSLHNWQESILNLHTAIRMNVTPTDSRTGPR 67
           PW+++     ++    P   CS S   S  S               R++  P+    G  
Sbjct: 72  PWELLPIFPDLQVKSEPSSPCSSSSLSSESS---------------RLSTEPSSEALGVG 116

Query: 68  SWVHSKWET-----------PWYLIQPMTVNVIPTSPRKMPEKSKVAPALSSSDTWMSAV 116
             +H K E+           P    + + +NVIPTS      ++K+ P    S     A 
Sbjct: 117 EVLHVKTESLAPPLCLLGDDPTSSFETVQINVIPTSDDSSDVQTKIEPVSPCSSVNSEAS 176

Query: 117 L 117
           L
Sbjct: 177 L 177


>gi|20631977 activating transcription factor 6 beta isoform a [Homo
           sapiens]
          Length = 703

 Score = 28.9 bits (63), Expect = 0.94
 Identities = 26/121 (21%), Positives = 42/121 (34%), Gaps = 26/121 (21%)

Query: 8   PWKVMGWLMPVKTNDGPPGVCSESGTLSSLSLHNWQESILNLHTAIRMNVTPTDSRTGPR 67
           PW+++     ++    P   CS S   S  S               R++  P+    G  
Sbjct: 75  PWELLPIFPDLQVKSEPSSPCSSSSLSSESS---------------RLSTEPSSEALGVG 119

Query: 68  SWVHSKWET-----------PWYLIQPMTVNVIPTSPRKMPEKSKVAPALSSSDTWMSAV 116
             +H K E+           P    + + +NVIPTS      ++K+ P    S     A 
Sbjct: 120 EVLHVKTESLAPPLCLLGDDPTSSFETVQINVIPTSDDSSDVQTKIEPVSPCSSVNSEAS 179

Query: 117 L 117
           L
Sbjct: 180 L 180


>gi|213021162 hypothetical protein LOC163882 isoform 2 [Homo
           sapiens]
          Length = 616

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 68  SWVHSKWETPWYLIQPMTVNVIPTSPR 94
           S +  +WET W  +QP TV  +  S +
Sbjct: 228 SAIQEQWETKWKTVQPHTVTALRNSEK 254


>gi|213021160 hypothetical protein LOC163882 isoform 1 [Homo
           sapiens]
          Length = 725

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 68  SWVHSKWETPWYLIQPMTVNVIPTSPR 94
           S +  +WET W  +QP TV  +  S +
Sbjct: 228 SAIQEQWETKWKTVQPHTVTALRNSEK 254


>gi|21359974 vitrin [Homo sapiens]
          Length = 693

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 17/97 (17%)

Query: 29  SESGTLSSLSLHNWQESILNLHTAIRMNVTPTDSRT-----------GPRSWVHSKWETP 77
           S S  + SLSL  W+ES + L +  +  VT   + T           G  +  + +   P
Sbjct: 116 SYSNGVQSLSLPRWRESFIVLESKPKKGVTYPSALTYSSSKSPAAQAGETTKAYQRPPIP 175

Query: 78  WYLIQPMT------VNVIPTSPRKMPEKSKVAPALSS 108
               QP+T      V V   +P  +P  S  A + +S
Sbjct: 176 GTTAQPVTLMQLLAVTVAVATPTTLPRPSPSAASTTS 212


>gi|51702222 SPT2, Suppressor of Ty, domain containing 1 [Homo
           sapiens]
          Length = 685

 Score = 26.6 bits (57), Expect = 4.7
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 17  PVKTNDGPPGVCSESGTLSSLSLHNWQESILNLHTAIRMNVTPTDSRTGPRSWVHSKWET 76
           PV    G P   + S ++   S    Q+S +  H A +    P+ SR GP    H+K ++
Sbjct: 307 PVFNGAGKPHSSTSSPSVPKTSASRTQKSAVE-HKAKKSLSHPSHSRPGPMVTPHNKAKS 365

Query: 77  P 77
           P
Sbjct: 366 P 366


>gi|169217460 PREDICTED: similar to Mucin-6, partial [Homo sapiens]
          Length = 350

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 13/85 (15%)

Query: 20  TNDGPPGVCSESGTLSSLSLHNWQESILNLH------------TAIRMNVTPTDSRTGPR 67
           T+  P    + SGT  +LS  N  ++  +LH            +    N+TP  + TG  
Sbjct: 241 THTAPTRTLTTSGTSQALSSLNTAKTSTSLHSHTSSTHHPEATSTSTTNITPNPTSTGTG 300

Query: 68  SWV-HSKWETPWYLIQPMTVNVIPT 91
           + V H+   T   L  P T +  PT
Sbjct: 301 TPVAHTTSATSSRLTTPFTTHSPPT 325


>gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens]
          Length = 920

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 69  WVHSKWETPWYLIQPMTVNVIPTSPRKMPEKSKVAPALSSS 109
           WV+     P Y   PM +  +P  P K  E S+ + + S S
Sbjct: 415 WVNYLLSNPEYKDTPMDIAQLPHLPEKTSESSETSDSESDS 455


>gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens]
          Length = 901

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 69  WVHSKWETPWYLIQPMTVNVIPTSPRKMPEKSKVAPALSSS 109
           WV+     P Y   PM +  +P  P K  E S+ + + S S
Sbjct: 396 WVNYLLSNPEYKDTPMDIAQLPHLPEKTSESSETSDSESDS 436


>gi|21359924 transmembrane protein 48 [Homo sapiens]
          Length = 674

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 19/78 (24%), Positives = 29/78 (37%)

Query: 25  PGVCSESGTLSSLSLHNWQESILNLHTAIRMNVTPTDSRTGPRSWVHSKWETPWYLIQPM 84
           P V S  GT    S+ N    I +++T      +P   R GPR W  +  +       P 
Sbjct: 441 PDVVSPFGTPFGSSVMNRMAGIFDVNTCYGSPQSPQLIRRGPRLWTSASDQQMTEFSNPS 500

Query: 85  TVNVIPTSPRKMPEKSKV 102
               I    + M + S +
Sbjct: 501 PSTSISAEGKTMRQPSVI 518


>gi|13899303 cysteine-rich secretory protein LCCL domain
          containing 1 [Homo sapiens]
          Length = 500

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 41 NWQESILNLHTAIRMNVTPTDSRTGPRSW 69
          N  +SIL+LH  +R  V PT S     +W
Sbjct: 60 NDMQSILDLHNKLRSQVYPTASNMEYMTW 88


>gi|89941470 ankyrin repeat domain 34 [Homo sapiens]
          Length = 496

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 18/84 (21%)

Query: 8   PWKVMGWLMPVKTNDGPPGVCSESGTLSSLSLHN------------------WQESILNL 49
           PW ++    PV   +G PG+   +   + L+L                    W E + + 
Sbjct: 249 PWGLVAPPQPVPPTEGRPGIERLTAEFNGLTLTGRPRLSRRHSTEGPEDPPPWAEKVTSG 308

Query: 50  HTAIRMNVTPTDSRTGPRSWVHSK 73
               R N  P    +GP S +  K
Sbjct: 309 GPLSRRNTAPEAQESGPPSGLRQK 332


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.127    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,686,206
Number of Sequences: 37866
Number of extensions: 246012
Number of successful extensions: 654
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 642
Number of HSP's gapped (non-prelim): 17
length of query: 119
length of database: 18,247,518
effective HSP length: 88
effective length of query: 31
effective length of database: 14,915,310
effective search space: 462374610
effective search space used: 462374610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.