Guide to the Human Genome
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Name: LOC100291706 Sequence: fasta or formatted (119aa) NCBI GI: 239754048
Description:

PREDICTED: hypothetical protein XP_002345860

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2          5           1
 C cysteine            1.7          2           1
 D aspartate           2.5          3           1
 E glutamate           3.4          4           1
 F phenylalanine       0.0          0           0
 G glycine             5.0          6           1
 H histidine           2.5          3           1
 I isoleucine          3.4          4           1
 K lysine              5.0          6           1
 L leucine             7.6          9           1
 M methionine          5.9          7           1
 N asparagine          4.2          5           1
 P proline            10.1         12           2
 Q glutamine           1.7          2           1
 R arginine            3.4          4           1
 S serine             12.6         15           3
 T threonine          10.1         12           2
 V valine              9.2         11           1
 W tryptophan          5.9          7           1
 Y tyrosine            1.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345860 
LOC100291050          1.000   PREDICTED: hypothetical protein XP_002346733 
LOC100287621          1.000   PREDICTED: hypothetical protein XP_002342569 
CRISP1                0.022   acidic epididymal glycoprotein-like 1 isoform 2 prec...
CRISP1                0.022   acidic epididymal glycoprotein-like 1 isoform 1 prec...
ATF6B                 0.017   activating transcription factor 6 beta isoform b [H...
ATF6B                 0.017   activating transcription factor 6 beta isoform a [Ho...
C1orf71               0.013   hypothetical protein LOC163882 isoform 2 
C1orf71               0.013   hypothetical protein LOC163882 isoform 1 
VIT                   0.009   vitrin 
SPTY2D1               0.009   SPT2, Suppressor of Ty, domain containing 1 
LOC100133761          0.004   PREDICTED: similar to Mucin-6, partial 
NPAS3                 0.004   neuronal PAS domain protein 3 isoform 2 
NPAS3                 0.004   neuronal PAS domain protein 3 isoform 1 
TMEM48                0.004   transmembrane protein 48 
CRISPLD1              0.004   cysteine-rich secretory protein LCCL domain containi...
ANKRD34A              0.004   ankyrin repeat domain 34 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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