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Search of human proteins with 239754046
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754046 PREDICTED: similar to hCG1654959 [Homo sapiens]
(104 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754046 PREDICTED: similar to hCG1654959 [Homo sapiens] 222 4e-59
gi|239748575 PREDICTED: similar to hCG1654959 [Homo sapiens] 222 4e-59
gi|239742592 PREDICTED: similar to hCG1654959 [Homo sapiens] 222 4e-59
gi|156564398 target of EGR1, member 1 (nuclear) [Homo sapiens] 31 0.18
gi|150418005 protein tyrosine phosphatase, non-receptor type 21 ... 30 0.53
gi|189027090 cytoplasmic polyadenylation element binding protein... 30 0.53
gi|154707844 transmembrane protein 91 isoform a [Homo sapiens] 29 0.69
gi|110578660 transmembrane protein 91 isoform b [Homo sapiens] 29 0.69
gi|149588874 transmembrane protein 91 isoform d [Homo sapiens] 29 0.69
gi|149588708 transmembrane protein 91 isoform c [Homo sapiens] 29 0.69
gi|149588687 transmembrane protein 91 isoform c [Homo sapiens] 29 0.69
gi|149588540 transmembrane protein 91 isoform e [Homo sapiens] 29 0.69
gi|205277429 hypothetical protein LOC57700 isoform b [Homo sapiens] 29 0.91
gi|205277427 hypothetical protein LOC57700 isoform a [Homo sapiens] 29 0.91
gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens] 28 1.5
gi|166197696 hypothetical protein LOC128344 [Homo sapiens] 28 1.5
gi|22325364 ubiquitin associated protein 2 [Homo sapiens] 27 2.6
gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens] 27 4.5
gi|103471997 DNA-directed RNA polymerase I A [Homo sapiens] 27 4.5
gi|22749387 zinc finger, CCHC domain containing 5 [Homo sapiens] 26 5.9
gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens] 26 7.7
gi|169164936 PREDICTED: family with sequence similarity 132, mem... 26 7.7
gi|169163362 PREDICTED: hypothetical protein LOC151176 [Homo sap... 26 7.7
gi|93140999 lunatic fringe isoform a [Homo sapiens] 26 7.7
gi|45827771 autoantigen RCD8 [Homo sapiens] 26 7.7
>gi|239754046 PREDICTED: similar to hCG1654959 [Homo sapiens]
Length = 104
Score = 222 bits (566), Expect = 4e-59
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MNQIIPALMGCQRKTAARDPLETEQREEDTFPEAQMFQKPAPHSQSHPKNALEFGVLKKR 60
MNQIIPALMGCQRKTAARDPLETEQREEDTFPEAQMFQKPAPHSQSHPKNALEFGVLKKR
Sbjct: 1 MNQIIPALMGCQRKTAARDPLETEQREEDTFPEAQMFQKPAPHSQSHPKNALEFGVLKKR 60
Query: 61 EEGLSKGLGTKLDPTSASAHASDGAHRWRAACPSFPWCPQTHLG 104
EEGLSKGLGTKLDPTSASAHASDGAHRWRAACPSFPWCPQTHLG
Sbjct: 61 EEGLSKGLGTKLDPTSASAHASDGAHRWRAACPSFPWCPQTHLG 104
>gi|239748575 PREDICTED: similar to hCG1654959 [Homo sapiens]
Length = 104
Score = 222 bits (566), Expect = 4e-59
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MNQIIPALMGCQRKTAARDPLETEQREEDTFPEAQMFQKPAPHSQSHPKNALEFGVLKKR 60
MNQIIPALMGCQRKTAARDPLETEQREEDTFPEAQMFQKPAPHSQSHPKNALEFGVLKKR
Sbjct: 1 MNQIIPALMGCQRKTAARDPLETEQREEDTFPEAQMFQKPAPHSQSHPKNALEFGVLKKR 60
Query: 61 EEGLSKGLGTKLDPTSASAHASDGAHRWRAACPSFPWCPQTHLG 104
EEGLSKGLGTKLDPTSASAHASDGAHRWRAACPSFPWCPQTHLG
Sbjct: 61 EEGLSKGLGTKLDPTSASAHASDGAHRWRAACPSFPWCPQTHLG 104
>gi|239742592 PREDICTED: similar to hCG1654959 [Homo sapiens]
Length = 104
Score = 222 bits (566), Expect = 4e-59
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MNQIIPALMGCQRKTAARDPLETEQREEDTFPEAQMFQKPAPHSQSHPKNALEFGVLKKR 60
MNQIIPALMGCQRKTAARDPLETEQREEDTFPEAQMFQKPAPHSQSHPKNALEFGVLKKR
Sbjct: 1 MNQIIPALMGCQRKTAARDPLETEQREEDTFPEAQMFQKPAPHSQSHPKNALEFGVLKKR 60
Query: 61 EEGLSKGLGTKLDPTSASAHASDGAHRWRAACPSFPWCPQTHLG 104
EEGLSKGLGTKLDPTSASAHASDGAHRWRAACPSFPWCPQTHLG
Sbjct: 61 EEGLSKGLGTKLDPTSASAHASDGAHRWRAACPSFPWCPQTHLG 104
>gi|156564398 target of EGR1, member 1 (nuclear) [Homo sapiens]
Length = 510
Score = 31.2 bits (69), Expect = 0.18
Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 29/116 (25%)
Query: 10 GCQRKTAARDPLETEQREEDTFPEAQMFQKPAPHSQSHPKNALEFGVLKKREE----GLS 65
G +K D ++ E+ E++ + + PHS+ KN LE G+ R E S
Sbjct: 364 GPPKKQVCGDSIKPEETEQEVAADET---RNLPHSKQGNKNDLEMGIKAARPEIADRATS 420
Query: 66 KGLGTKLDPTSASAHASDGAHR-------------------WRAACPSFPWCPQTH 102
+ G++ P DG HR C S PW P+ H
Sbjct: 421 EVPGSQASPNPV---PGDGLHRAGFDAFMTGYVMAYVEVSQGPQPCSSGPWLPECH 473
>gi|150418005 protein tyrosine phosphatase, non-receptor type 21
[Homo sapiens]
Length = 1174
Score = 29.6 bits (65), Expect = 0.53
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 14/68 (20%)
Query: 27 EEDTFPEAQMFQK------PAPHSQSHPKNALEFGVLKKREEGLSKGL-GTKLDPTSASA 79
+ED+ P A Q+ A H+Q H +N++E GLS GL G +L + SA
Sbjct: 607 QEDSLPVAHSLQEVSEPLTAARHAQLHKRNSIEVA-------GLSHGLEGLRLKERTLSA 659
Query: 80 HASDGAHR 87
A++ A R
Sbjct: 660 SAAEVAPR 667
>gi|189027090 cytoplasmic polyadenylation element binding protein 4
[Homo sapiens]
Length = 729
Score = 29.6 bits (65), Expect = 0.53
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 13/87 (14%)
Query: 18 RDPLETEQ------REEDTFPEAQMFQKPAPHSQSHPKNA-------LEFGVLKKREEGL 64
+DPLE +Q +E PE + + + +N +E VL +
Sbjct: 88 QDPLEKQQLSPSPGQEAGILPETEKAKSEENQGDNSSENGNGKEKIRIESPVLTGFDYQE 147
Query: 65 SKGLGTKLDPTSASAHASDGAHRWRAA 91
+ GLGT P ++SA + G W AA
Sbjct: 148 ATGLGTSTQPLTSSASSLTGFSNWSAA 174
>gi|154707844 transmembrane protein 91 isoform a [Homo sapiens]
Length = 172
Score = 29.3 bits (64), Expect = 0.69
Identities = 20/74 (27%), Positives = 24/74 (32%), Gaps = 7/74 (9%)
Query: 38 QKPAPHSQSHPKNALEFG-------VLKKREEGLSKGLGTKLDPTSASAHASDGAHRWRA 90
QKP H P + F L +S GLG P +SD W
Sbjct: 24 QKPGRHELGSPLREIAFAESLRGLQFLSPPLPSVSAGLGEPRPPDVEDMSSSDSDSDWDG 83
Query: 91 ACPSFPWCPQTHLG 104
P+ P HLG
Sbjct: 84 GSRLSPFLPHDHLG 97
>gi|110578660 transmembrane protein 91 isoform b [Homo sapiens]
Length = 139
Score = 29.3 bits (64), Expect = 0.69
Identities = 20/74 (27%), Positives = 24/74 (32%), Gaps = 7/74 (9%)
Query: 38 QKPAPHSQSHPKNALEFG-------VLKKREEGLSKGLGTKLDPTSASAHASDGAHRWRA 90
QKP H P + F L +S GLG P +SD W
Sbjct: 24 QKPGRHELGSPLREIAFAESLRGLQFLSPPLPSVSAGLGEPRPPDVEDMSSSDSDSDWDG 83
Query: 91 ACPSFPWCPQTHLG 104
P+ P HLG
Sbjct: 84 GSRLSPFLPHDHLG 97
>gi|149588874 transmembrane protein 91 isoform d [Homo sapiens]
Length = 127
Score = 29.3 bits (64), Expect = 0.69
Identities = 20/74 (27%), Positives = 24/74 (32%), Gaps = 7/74 (9%)
Query: 38 QKPAPHSQSHPKNALEFG-------VLKKREEGLSKGLGTKLDPTSASAHASDGAHRWRA 90
QKP H P + F L +S GLG P +SD W
Sbjct: 24 QKPGRHELGSPLREIAFAESLRGLQFLSPPLPSVSAGLGEPRPPDVEDMSSSDSDSDWDG 83
Query: 91 ACPSFPWCPQTHLG 104
P+ P HLG
Sbjct: 84 GSRLSPFLPHDHLG 97
>gi|149588708 transmembrane protein 91 isoform c [Homo sapiens]
Length = 133
Score = 29.3 bits (64), Expect = 0.69
Identities = 20/74 (27%), Positives = 24/74 (32%), Gaps = 7/74 (9%)
Query: 38 QKPAPHSQSHPKNALEFG-------VLKKREEGLSKGLGTKLDPTSASAHASDGAHRWRA 90
QKP H P + F L +S GLG P +SD W
Sbjct: 24 QKPGRHELGSPLREIAFAESLRGLQFLSPPLPSVSAGLGEPRPPDVEDMSSSDSDSDWDG 83
Query: 91 ACPSFPWCPQTHLG 104
P+ P HLG
Sbjct: 84 GSRLSPFLPHDHLG 97
>gi|149588687 transmembrane protein 91 isoform c [Homo sapiens]
Length = 133
Score = 29.3 bits (64), Expect = 0.69
Identities = 20/74 (27%), Positives = 24/74 (32%), Gaps = 7/74 (9%)
Query: 38 QKPAPHSQSHPKNALEFG-------VLKKREEGLSKGLGTKLDPTSASAHASDGAHRWRA 90
QKP H P + F L +S GLG P +SD W
Sbjct: 24 QKPGRHELGSPLREIAFAESLRGLQFLSPPLPSVSAGLGEPRPPDVEDMSSSDSDSDWDG 83
Query: 91 ACPSFPWCPQTHLG 104
P+ P HLG
Sbjct: 84 GSRLSPFLPHDHLG 97
>gi|149588540 transmembrane protein 91 isoform e [Homo sapiens]
Length = 123
Score = 29.3 bits (64), Expect = 0.69
Identities = 20/74 (27%), Positives = 24/74 (32%), Gaps = 7/74 (9%)
Query: 38 QKPAPHSQSHPKNALEFG-------VLKKREEGLSKGLGTKLDPTSASAHASDGAHRWRA 90
QKP H P + F L +S GLG P +SD W
Sbjct: 24 QKPGRHELGSPLREIAFAESLRGLQFLSPPLPSVSAGLGEPRPPDVEDMSSSDSDSDWDG 83
Query: 91 ACPSFPWCPQTHLG 104
P+ P HLG
Sbjct: 84 GSRLSPFLPHDHLG 97
>gi|205277429 hypothetical protein LOC57700 isoform b [Homo sapiens]
Length = 738
Score = 28.9 bits (63), Expect = 0.91
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 19 DPLETEQREEDTFPEAQMFQKPAPHSQSHPKN 50
DPL T+ E+T P + P + HPKN
Sbjct: 528 DPLFTDISPENTLPNQEWLSSSPPATPDHPKN 559
>gi|205277427 hypothetical protein LOC57700 isoform a [Homo sapiens]
Length = 765
Score = 28.9 bits (63), Expect = 0.91
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 19 DPLETEQREEDTFPEAQMFQKPAPHSQSHPKN 50
DPL T+ E+T P + P + HPKN
Sbjct: 528 DPLFTDISPENTLPNQEWLSSSPPATPDHPKN 559
>gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens]
Length = 1597
Score = 28.1 bits (61), Expect = 1.5
Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 2/94 (2%)
Query: 12 QRKTAARDPLETEQREEDTFPEAQMFQKPAPHSQSHPKNALEFGVLKKREEGLSKGLGTK 71
QR+ +ET+ P + P P + +A G L + +
Sbjct: 731 QRRDTHPSVVETDGHARVVVPTLKQHSHPPPLALGSGLHAPHKGPLPQASDPAVARQHRP 790
Query: 72 LDPTSASAHASDGAHRWR--AACPSFPWCPQTHL 103
L T S+H + RWR P P PQ HL
Sbjct: 791 LPSTPDSSHHAQATPRWRYNKPLPPTPDLPQPHL 824
>gi|166197696 hypothetical protein LOC128344 [Homo sapiens]
Length = 191
Score = 28.1 bits (61), Expect = 1.5
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 17 ARDPLETEQREEDTFPEAQMFQKPAPHSQSHPKNALEFGVLKKREEGLSK 66
AR + + +++ P A +QK +P + H +N F VL R + K
Sbjct: 75 ARTAVRFKPIQKEMTPHAGRYQKVSPQQEKHKQNFAPFNVLVPRFKNYPK 124
>gi|22325364 ubiquitin associated protein 2 [Homo sapiens]
Length = 1119
Score = 27.3 bits (59), Expect = 2.6
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 15 TAARDPLETEQREEDTFPEAQMFQKPAPHSQSHPKNALE 53
TA+ P E + + QKP PHSQ+ N+ E
Sbjct: 274 TASSAPAENHILPGQSIDLVALLQKPVPHSQASEANSFE 312
>gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens]
Length = 602
Score = 26.6 bits (57), Expect = 4.5
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 40 PAPHSQSHPKNALEFGVL-KKREEGLSKGLGTKLDPTSASAHASDGAHRWRAAC 92
PAPH Q HP+ + K G G G +SASA A+ A A+C
Sbjct: 47 PAPHPQQHPQQHPQNQAHGKGGHRGGGGGGGKSSSSSSASAAAAAAAASSSASC 100
>gi|103471997 DNA-directed RNA polymerase I A [Homo sapiens]
Length = 1720
Score = 26.6 bits (57), Expect = 4.5
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 22 ETEQREEDTFPEAQMFQKPAPHSQSHPKNALEFGVLKKREEGLSKGLGTKLDPT 75
E E+RE + + M ++ PH + G K +E+ GLGT+ DP+
Sbjct: 1431 EEEEREGEENDDEDMQEERNPHRE---------GARKTQEQDEEVGLGTEEDPS 1475
>gi|22749387 zinc finger, CCHC domain containing 5 [Homo sapiens]
Length = 475
Score = 26.2 bits (56), Expect = 5.9
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 13 RKTAARDPLETEQREE-----DTFPEAQMFQKPAPHSQSHPKNALEFGVLKKREEGL 64
+ + +DP E+ +E +T + + + P P P NA EF L +E L
Sbjct: 154 KNSEPQDPPNIEKPQEAPEYQETAAQLEFLELPPPQEPLEPSNAQEFLELSAAQESL 210
>gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens]
Length = 1390
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 13 RKTAARDPLETEQREEDTFPEAQMFQKPAPH 43
R A + E++EEDTF E ++F + H
Sbjct: 968 RSLTAEEVKRLEEQEEDTFRELRIFLRNVTH 998
>gi|169164936 PREDICTED: family with sequence similarity 132,
member B [Homo sapiens]
Length = 367
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 42 PHSQSHPKNALEFGVLKKREEGLSKGLGTKLDPTSASAHASDGAHRW 88
P +SHP A G + E GL +PT+ AH+ D W
Sbjct: 51 PFPRSHPPRA--GGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95
>gi|169163362 PREDICTED: hypothetical protein LOC151176 [Homo
sapiens]
Length = 367
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 42 PHSQSHPKNALEFGVLKKREEGLSKGLGTKLDPTSASAHASDGAHRW 88
P +SHP A G + E GL +PT+ AH+ D W
Sbjct: 51 PFPRSHPPRA--GGEAEPSEANRPAGLAVFQEPTAERAHSVDPRDAW 95
>gi|93140999 lunatic fringe isoform a [Homo sapiens]
Length = 379
Score = 25.8 bits (55), Expect = 7.7
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 42 PHSQSHPKNALEFGVLKKREEGLS-KG-LGTKLDPTSASAHASDGAHRWRAACPSFPWCP 99
P S+ H + L +G+ + + + KG + DP S S H + P PWCP
Sbjct: 322 PTSELHEQVTLSYGMFENKRNAVHVKGPFSVEADP---SRFRSIHCHLY----PDTPWCP 374
Query: 100 QT 101
+T
Sbjct: 375 RT 376
>gi|45827771 autoantigen RCD8 [Homo sapiens]
Length = 1401
Score = 25.8 bits (55), Expect = 7.7
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 21 LETEQREEDTFPEAQMFQKPAPHSQSHPKNALEFGVLKKREEGLSKGLGTK----LDPTS 76
LE ++ E P+A + +P S AL + + E LS+G G+ L+P S
Sbjct: 709 LELQEVEPLGLPQASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGSSAPEGLEPDS 768
Query: 77 ASAHAS 82
++ AS
Sbjct: 769 MASAAS 774
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.129 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,401,999
Number of Sequences: 37866
Number of extensions: 178239
Number of successful extensions: 668
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 651
Number of HSP's gapped (non-prelim): 26
length of query: 104
length of database: 18,247,518
effective HSP length: 75
effective length of query: 29
effective length of database: 15,407,568
effective search space: 446819472
effective search space used: 446819472
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.