Search of human proteins with 239753660

Search of human proteins with 239753660

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239753660 PREDICTED: hypothetical protein [Homo sapiens]
         (111 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753660 PREDICTED: hypothetical protein [Homo sapiens]           232   4e-62
gi|239748319 PREDICTED: hypothetical protein [Homo sapiens]           232   4e-62
gi|239755083 PREDICTED: similar to hCG1984907 [Homo sapiens]          114   2e-26
gi|169173235 PREDICTED: hypothetical protein [Homo sapiens]            86   8e-18
gi|149363700 syntaxin binding protein 5-like [Homo sapiens]            30   0.42 
gi|18252045 ADAM metallopeptidase domain 33 isoform alpha prepro...    30   0.54 
gi|24041040 ADAM metallopeptidase domain 33 isoform beta preprop...    30   0.54 
gi|110611156 laminin, gamma 3 precursor [Homo sapiens]                 28   1.6  
gi|19923599 calmin [Homo sapiens]                                      28   2.1  
gi|193788653 hypothetical protein LOC100131897 [Homo sapiens]          27   4.6  
gi|148886707 hephaestin-like 1 [Homo sapiens]                          27   4.6  
gi|32140180 keratin associated protein 12-1 [Homo sapiens]             26   6.0  
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p...    26   7.8  
gi|238859649 keratin associated protein 10-8 [Homo sapiens]            26   7.8  
gi|60218906 golgi autoantigen, golgin subfamily a, 8F [Homo sapi...    26   7.8  
gi|55743080 ADAM metallopeptidase domain 2 proprotein [Homo sapi...    26   7.8  
gi|4502119 amine oxidase, copper containing 3 precursor [Homo sa...    26   7.8  
gi|4557439 cyclin-dependent kinase 3 [Homo sapiens]                    26   7.8  
gi|133892686 hypothetical protein LOC727830 [Homo sapiens]             26   7.8  
gi|157885806 chromosome 12 open reading frame 51 [Homo sapiens]        26   7.8  
gi|194578896 golgi autoantigen, golgin subfamily a, 8E [Homo sap...    26   7.8  
gi|60218910 golgi autoantigen, golgin subfamily a, 8G [Homo sapi...    26   7.8  

>gi|239753660 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 111

 Score =  232 bits (592), Expect = 4e-62
 Identities = 111/111 (100%), Positives = 111/111 (100%)

Query: 1   MPRPASARARCTHPLACAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPELFLFGHLG 60
           MPRPASARARCTHPLACAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPELFLFGHLG
Sbjct: 1   MPRPASARARCTHPLACAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPELFLFGHLG 60

Query: 61  SSQFHEFLKNLQDNSPSSSTSPGASAPTEILLAHLFQLLCPGVLGMSLSGV 111
           SSQFHEFLKNLQDNSPSSSTSPGASAPTEILLAHLFQLLCPGVLGMSLSGV
Sbjct: 61  SSQFHEFLKNLQDNSPSSSTSPGASAPTEILLAHLFQLLCPGVLGMSLSGV 111


>gi|239748319 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 111

 Score =  232 bits (592), Expect = 4e-62
 Identities = 111/111 (100%), Positives = 111/111 (100%)

Query: 1   MPRPASARARCTHPLACAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPELFLFGHLG 60
           MPRPASARARCTHPLACAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPELFLFGHLG
Sbjct: 1   MPRPASARARCTHPLACAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPELFLFGHLG 60

Query: 61  SSQFHEFLKNLQDNSPSSSTSPGASAPTEILLAHLFQLLCPGVLGMSLSGV 111
           SSQFHEFLKNLQDNSPSSSTSPGASAPTEILLAHLFQLLCPGVLGMSLSGV
Sbjct: 61  SSQFHEFLKNLQDNSPSSSTSPGASAPTEILLAHLFQLLCPGVLGMSLSGV 111


>gi|239755083 PREDICTED: similar to hCG1984907 [Homo sapiens]
          Length = 103

 Score =  114 bits (285), Expect = 2e-26
 Identities = 51/53 (96%), Positives = 51/53 (96%)

Query: 1  MPRPASARARCTHPLACAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPEL 53
          MPRPASARARC HPL CAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPEL
Sbjct: 1  MPRPASARARCAHPLTCAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPEL 53


>gi|169173235 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 331

 Score = 85.5 bits (210), Expect = 8e-18
 Identities = 38/50 (76%), Positives = 43/50 (86%)

Query: 13  HPLACAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPELFLFGHLGSS 62
           HPL+C H    PSE++PVPQ+EMQKSPVFCVAHAGS R ELFLFGHLGS+
Sbjct: 277 HPLSCTHFPTFPSEISPVPQLEMQKSPVFCVAHAGSSRLELFLFGHLGST 326


>gi|149363700 syntaxin binding protein 5-like [Homo sapiens]
          Length = 1186

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 28  NPVPQMEMQKSPVFCVAHAGSCRPELFL 55
           NP P M++ +SPV C A+   C P+L L
Sbjct: 401 NPYP-MDIHESPVTCTAYFADCPPDLIL 427


>gi|18252045 ADAM metallopeptidase domain 33 isoform alpha
           preproprotein [Homo sapiens]
          Length = 813

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9   ARCTHPLACAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPELFL 55
           A+C H   C  CL  P+       M     P FC   +  C P+++L
Sbjct: 455 AQCAHGDCCVRCLLKPAGALCRQAMGDCDLPEFCTGTSSHCPPDVYL 501


>gi|24041040 ADAM metallopeptidase domain 33 isoform beta
           preproprotein [Homo sapiens]
          Length = 787

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 9   ARCTHPLACAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPELFL 55
           A+C H   C  CL  P+       M     P FC   +  C P+++L
Sbjct: 455 AQCAHGDCCVRCLLKPAGALCRQAMGDCDLPEFCTGTSSHCPPDVYL 501


>gi|110611156 laminin, gamma 3 precursor [Homo sapiens]
          Length = 1575

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 24/93 (25%), Positives = 31/93 (33%), Gaps = 5/93 (5%)

Query: 4   PASARARCTHPLA---CAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPELFLFGHLG 60
           P S R  C   +    C  C   P   N  P      S  FC  H+  C        H  
Sbjct: 443 PRSGRCPCKENVEGNLCDRCR--PGTFNLQPHNPAGCSSCFCYGHSKVCASTAQFQVHHI 500

Query: 61  SSQFHEFLKNLQDNSPSSSTSPGASAPTEILLA 93
            S FH+  +     S   S  P   +P  +LL+
Sbjct: 501 LSDFHQGAEGWWARSVGGSEHPPQWSPNGVLLS 533


>gi|19923599 calmin [Homo sapiens]
          Length = 1002

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 13/22 (59%), Positives = 14/22 (63%)

Query: 63  QFHEFLKNLQDNSPSSSTSPGA 84
           Q  E   NL  NSPSSS SPG+
Sbjct: 139 QIKELTGNLSRNSPSSSLSPGS 160


>gi|193788653 hypothetical protein LOC100131897 [Homo sapiens]
          Length = 535

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 63  QFHEFLKNLQDNSPSSSTSPGASAPTE 89
           +FHE L++L++  P    SP   +P E
Sbjct: 485 RFHEVLQSLEEAEPVEEASPPPKSPAE 511


>gi|148886707 hephaestin-like 1 [Homo sapiens]
          Length = 1159

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 58   HLGSSQFHEFLKNLQDNSPSSSTSPG-ASAPTEI 90
            H G    +  L+N+ +  P S+TSPG AS P  +
Sbjct: 1056 HAGMETTYTVLRNIDNRIPYSTTSPGVASHPATV 1089


>gi|32140180 keratin associated protein 12-1 [Homo sapiens]
          Length = 96

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 4  PASARARCTHPLACAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSCRPELF 54
          P+  +A C  P+ C   + +P    P   + ++     CV    SCRP ++
Sbjct: 17 PSPCQASCYIPVGCQSSVCVPVSFKPAVCVPVRCQSSVCV--PVSCRPVVY 65


>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
           potassium channel 4 [Homo sapiens]
          Length = 1203

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 3/36 (8%)

Query: 57  GHLGSSQFHEFLKNLQDNSPSS--STSPGASAPTEI 90
           G+LG+ Q    LK LQ   PS+  S SP AS+P+++
Sbjct: 815 GNLGAGQTPRHLKRLQSLIPSALGSASP-ASSPSQV 849


>gi|238859649 keratin associated protein 10-8 [Homo sapiens]
          Length = 259

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 11 CTHPLACAHCLALPSEMNPVPQMEMQKSPVFC 42
          C  P +CA     PS   P P + +  +PV C
Sbjct: 50 CCEPRSCASSCCTPSCCAPAPCLALVCAPVSC 81


>gi|60218906 golgi autoantigen, golgin subfamily a, 8F [Homo
           sapiens]
          Length = 283

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 75  SPSSSTSPGASAPTEILLAHLFQLLC 100
           +P+   SPGA AP E+  AH    LC
Sbjct: 200 NPAHEPSPGAPAPQELGAAHKHGDLC 225


>gi|55743080 ADAM metallopeptidase domain 2 proprotein [Homo
           sapiens]
          Length = 735

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 12/43 (27%), Positives = 17/43 (39%)

Query: 7   ARARCTHPLACAHCLALPSEMNPVPQMEMQKSPVFCVAHAGSC 49
           A + C     C +CL +  E    P  E    P +C   + SC
Sbjct: 423 AGSNCAEGPCCENCLFMSKERMCRPSFEECDLPEYCNGSSASC 465


>gi|4502119 amine oxidase, copper containing 3 precursor [Homo
           sapiens]
          Length = 763

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 38  SPVFCVAHAGSCRPELFLFGHLGSS 62
           +P+ C+  A +C P+L  F H G S
Sbjct: 737 NPLACLPQAAACAPDLPAFSHGGFS 761


>gi|4557439 cyclin-dependent kinase 3 [Homo sapiens]
          Length = 305

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 66  EFLKNLQDNSPSSSTSPGASAPTEILLAHLFQLL 99
           EFL   QD      ++PG+  P  ++ ++LFQLL
Sbjct: 81  EFLS--QDLKKYMDSTPGSELPLHLIKSYLFQLL 112


>gi|133892686 hypothetical protein LOC727830 [Homo sapiens]
          Length = 1347

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 56  FGHLGSSQFHEFLKNLQDNSPSSSTSPGASAP 87
           +G+LG  Q    L  LQD SP +S + G  +P
Sbjct: 611 WGNLGRIQESLDLMQLQDESPGTSQAKGKPSP 642


>gi|157885806 chromosome 12 open reading frame 51 [Homo sapiens]
          Length = 3996

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 12/24 (50%), Positives = 17/24 (70%)

Query: 70   NLQDNSPSSSTSPGASAPTEILLA 93
            NL D+S SSS+SPG +  +  LL+
Sbjct: 2865 NLSDSSSSSSSSPGQTPQSPSLLS 2888


>gi|194578896 golgi autoantigen, golgin subfamily a, 8E [Homo
           sapiens]
          Length = 430

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 75  SPSSSTSPGASAPTEILLAHLFQLLC 100
           +P+   SPGA AP E+  AH    LC
Sbjct: 347 NPAHEPSPGAPAPQELGAAHKHGDLC 372


>gi|60218910 golgi autoantigen, golgin subfamily a, 8G [Homo
           sapiens]
          Length = 434

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 75  SPSSSTSPGASAPTEILLAHLFQLLC 100
           +P+   SPGA AP E+  AH    LC
Sbjct: 351 NPAHEPSPGAPAPQELGAAHKHGDLC 376


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.133    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,322,195
Number of Sequences: 37866
Number of extensions: 247969
Number of successful extensions: 772
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 753
Number of HSP's gapped (non-prelim): 22
length of query: 111
length of database: 18,247,518
effective HSP length: 81
effective length of query: 30
effective length of database: 15,180,372
effective search space: 455411160
effective search space used: 455411160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.