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Search of human proteins with 239753625
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753625 PREDICTED: hypothetical protein [Homo sapiens]
(483 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753625 PREDICTED: hypothetical protein [Homo sapiens] 1003 0.0
gi|239748200 PREDICTED: hypothetical protein XP_002346593 [Homo ... 1003 0.0
gi|239742098 PREDICTED: hypothetical protein XP_002342434 [Homo ... 1003 0.0
gi|13376335 hypothetical protein LOC79946 [Homo sapiens] 32 1.7
gi|169172508 PREDICTED: hypothetical protein [Homo sapiens] 31 2.2
gi|169173078 PREDICTED: hypothetical protein [Homo sapiens] 31 2.2
gi|195927059 axin 2 [Homo sapiens] 31 2.2
gi|21536367 TBP-associated factor 1C isoform 2 [Homo sapiens] 31 2.9
gi|33598931 scavenger receptor class F, member 1 isoform 3 precu... 30 3.7
gi|33598929 scavenger receptor class F, member 1 isoform 1 precu... 30 3.7
gi|145309306 scavenger receptor class F, member 1 isoform 5 prec... 30 3.7
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof... 30 3.7
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof... 30 3.7
gi|197333706 leucine rich repeat containing 8 family, member D [... 30 3.7
gi|34222199 leucine rich repeat containing 8 family, member D [H... 30 3.7
gi|148528975 LON peptidase N-terminal domain and ring finger 2 [... 30 4.9
gi|239752220 PREDICTED: hypothetical protein XP_002348149 [Homo ... 29 8.3
gi|239746741 PREDICTED: hypothetical protein XP_002343822 [Homo ... 29 8.3
gi|31742490 gamma-aminobutyric acid A receptor, gamma 1 precurso... 29 8.3
gi|28557802 sterile alpha motif domain containing 14 [Homo sapiens] 29 8.3
>gi|239753625 PREDICTED: hypothetical protein [Homo sapiens]
Length = 483
Score = 1003 bits (2593), Expect = 0.0
Identities = 483/483 (100%), Positives = 483/483 (100%)
Query: 1 MGAPNLVLGHALVDAFVLRPHAEHAQGPAGEPEALAGDEGHSIPQPQHGGRGVPTHLTGC 60
MGAPNLVLGHALVDAFVLRPHAEHAQGPAGEPEALAGDEGHSIPQPQHGGRGVPTHLTGC
Sbjct: 1 MGAPNLVLGHALVDAFVLRPHAEHAQGPAGEPEALAGDEGHSIPQPQHGGRGVPTHLTGC 60
Query: 61 TDQREGQAEDSPQQTLTKHLDIVEDDRCPGLPNPIVGHAAVKLWPSVLSFALVAPPESRA 120
TDQREGQAEDSPQQTLTKHLDIVEDDRCPGLPNPIVGHAAVKLWPSVLSFALVAPPESRA
Sbjct: 61 TDQREGQAEDSPQQTLTKHLDIVEDDRCPGLPNPIVGHAAVKLWPSVLSFALVAPPESRA 120
Query: 121 VAKPGACLLLGHPGWMQEVASCQVGQTATALCEDEHGTAWRRGQRKRKPTMLSVCGCACV 180
VAKPGACLLLGHPGWMQEVASCQVGQTATALCEDEHGTAWRRGQRKRKPTMLSVCGCACV
Sbjct: 121 VAKPGACLLLGHPGWMQEVASCQVGQTATALCEDEHGTAWRRGQRKRKPTMLSVCGCACV 180
Query: 181 CTGTPLPSLSSKCRPCLRPRRHPGHTLVPSHSVVVKGSDDEGPVGDEDTQSIIRAIQLLS 240
CTGTPLPSLSSKCRPCLRPRRHPGHTLVPSHSVVVKGSDDEGPVGDEDTQSIIRAIQLLS
Sbjct: 181 CTGTPLPSLSSKCRPCLRPRRHPGHTLVPSHSVVVKGSDDEGPVGDEDTQSIIRAIQLLS 240
Query: 241 IQAPGYIHPWRFHHAAQDHSASGLLDGGRRLDGDLRDLHSLKSAKQPAVARRRQASVTSG 300
IQAPGYIHPWRFHHAAQDHSASGLLDGGRRLDGDLRDLHSLKSAKQPAVARRRQASVTSG
Sbjct: 241 IQAPGYIHPWRFHHAAQDHSASGLLDGGRRLDGDLRDLHSLKSAKQPAVARRRQASVTSG 300
Query: 301 LIPLHAVIVPRSMVYHKGLKPTSHKPPGSHKEILPSLATLCYSSFSLLCTEIKMKEEAAI 360
LIPLHAVIVPRSMVYHKGLKPTSHKPPGSHKEILPSLATLCYSSFSLLCTEIKMKEEAAI
Sbjct: 301 LIPLHAVIVPRSMVYHKGLKPTSHKPPGSHKEILPSLATLCYSSFSLLCTEIKMKEEAAI 360
Query: 361 AKNIYFGGQGGLYSSKELEWAWKRFLILCLIKSTIITCPPECLVLRVAGLNTDTTGTWAE 420
AKNIYFGGQGGLYSSKELEWAWKRFLILCLIKSTIITCPPECLVLRVAGLNTDTTGTWAE
Sbjct: 361 AKNIYFGGQGGLYSSKELEWAWKRFLILCLIKSTIITCPPECLVLRVAGLNTDTTGTWAE 420
Query: 421 PKAETLEAKGSVACHHHRMWMDGMGRSAQLILPDVEPKHRQLLTVYQPGLNSSSARAGML 480
PKAETLEAKGSVACHHHRMWMDGMGRSAQLILPDVEPKHRQLLTVYQPGLNSSSARAGML
Sbjct: 421 PKAETLEAKGSVACHHHRMWMDGMGRSAQLILPDVEPKHRQLLTVYQPGLNSSSARAGML 480
Query: 481 SGS 483
SGS
Sbjct: 481 SGS 483
>gi|239748200 PREDICTED: hypothetical protein XP_002346593 [Homo
sapiens]
Length = 483
Score = 1003 bits (2593), Expect = 0.0
Identities = 483/483 (100%), Positives = 483/483 (100%)
Query: 1 MGAPNLVLGHALVDAFVLRPHAEHAQGPAGEPEALAGDEGHSIPQPQHGGRGVPTHLTGC 60
MGAPNLVLGHALVDAFVLRPHAEHAQGPAGEPEALAGDEGHSIPQPQHGGRGVPTHLTGC
Sbjct: 1 MGAPNLVLGHALVDAFVLRPHAEHAQGPAGEPEALAGDEGHSIPQPQHGGRGVPTHLTGC 60
Query: 61 TDQREGQAEDSPQQTLTKHLDIVEDDRCPGLPNPIVGHAAVKLWPSVLSFALVAPPESRA 120
TDQREGQAEDSPQQTLTKHLDIVEDDRCPGLPNPIVGHAAVKLWPSVLSFALVAPPESRA
Sbjct: 61 TDQREGQAEDSPQQTLTKHLDIVEDDRCPGLPNPIVGHAAVKLWPSVLSFALVAPPESRA 120
Query: 121 VAKPGACLLLGHPGWMQEVASCQVGQTATALCEDEHGTAWRRGQRKRKPTMLSVCGCACV 180
VAKPGACLLLGHPGWMQEVASCQVGQTATALCEDEHGTAWRRGQRKRKPTMLSVCGCACV
Sbjct: 121 VAKPGACLLLGHPGWMQEVASCQVGQTATALCEDEHGTAWRRGQRKRKPTMLSVCGCACV 180
Query: 181 CTGTPLPSLSSKCRPCLRPRRHPGHTLVPSHSVVVKGSDDEGPVGDEDTQSIIRAIQLLS 240
CTGTPLPSLSSKCRPCLRPRRHPGHTLVPSHSVVVKGSDDEGPVGDEDTQSIIRAIQLLS
Sbjct: 181 CTGTPLPSLSSKCRPCLRPRRHPGHTLVPSHSVVVKGSDDEGPVGDEDTQSIIRAIQLLS 240
Query: 241 IQAPGYIHPWRFHHAAQDHSASGLLDGGRRLDGDLRDLHSLKSAKQPAVARRRQASVTSG 300
IQAPGYIHPWRFHHAAQDHSASGLLDGGRRLDGDLRDLHSLKSAKQPAVARRRQASVTSG
Sbjct: 241 IQAPGYIHPWRFHHAAQDHSASGLLDGGRRLDGDLRDLHSLKSAKQPAVARRRQASVTSG 300
Query: 301 LIPLHAVIVPRSMVYHKGLKPTSHKPPGSHKEILPSLATLCYSSFSLLCTEIKMKEEAAI 360
LIPLHAVIVPRSMVYHKGLKPTSHKPPGSHKEILPSLATLCYSSFSLLCTEIKMKEEAAI
Sbjct: 301 LIPLHAVIVPRSMVYHKGLKPTSHKPPGSHKEILPSLATLCYSSFSLLCTEIKMKEEAAI 360
Query: 361 AKNIYFGGQGGLYSSKELEWAWKRFLILCLIKSTIITCPPECLVLRVAGLNTDTTGTWAE 420
AKNIYFGGQGGLYSSKELEWAWKRFLILCLIKSTIITCPPECLVLRVAGLNTDTTGTWAE
Sbjct: 361 AKNIYFGGQGGLYSSKELEWAWKRFLILCLIKSTIITCPPECLVLRVAGLNTDTTGTWAE 420
Query: 421 PKAETLEAKGSVACHHHRMWMDGMGRSAQLILPDVEPKHRQLLTVYQPGLNSSSARAGML 480
PKAETLEAKGSVACHHHRMWMDGMGRSAQLILPDVEPKHRQLLTVYQPGLNSSSARAGML
Sbjct: 421 PKAETLEAKGSVACHHHRMWMDGMGRSAQLILPDVEPKHRQLLTVYQPGLNSSSARAGML 480
Query: 481 SGS 483
SGS
Sbjct: 481 SGS 483
>gi|239742098 PREDICTED: hypothetical protein XP_002342434 [Homo
sapiens]
Length = 483
Score = 1003 bits (2593), Expect = 0.0
Identities = 483/483 (100%), Positives = 483/483 (100%)
Query: 1 MGAPNLVLGHALVDAFVLRPHAEHAQGPAGEPEALAGDEGHSIPQPQHGGRGVPTHLTGC 60
MGAPNLVLGHALVDAFVLRPHAEHAQGPAGEPEALAGDEGHSIPQPQHGGRGVPTHLTGC
Sbjct: 1 MGAPNLVLGHALVDAFVLRPHAEHAQGPAGEPEALAGDEGHSIPQPQHGGRGVPTHLTGC 60
Query: 61 TDQREGQAEDSPQQTLTKHLDIVEDDRCPGLPNPIVGHAAVKLWPSVLSFALVAPPESRA 120
TDQREGQAEDSPQQTLTKHLDIVEDDRCPGLPNPIVGHAAVKLWPSVLSFALVAPPESRA
Sbjct: 61 TDQREGQAEDSPQQTLTKHLDIVEDDRCPGLPNPIVGHAAVKLWPSVLSFALVAPPESRA 120
Query: 121 VAKPGACLLLGHPGWMQEVASCQVGQTATALCEDEHGTAWRRGQRKRKPTMLSVCGCACV 180
VAKPGACLLLGHPGWMQEVASCQVGQTATALCEDEHGTAWRRGQRKRKPTMLSVCGCACV
Sbjct: 121 VAKPGACLLLGHPGWMQEVASCQVGQTATALCEDEHGTAWRRGQRKRKPTMLSVCGCACV 180
Query: 181 CTGTPLPSLSSKCRPCLRPRRHPGHTLVPSHSVVVKGSDDEGPVGDEDTQSIIRAIQLLS 240
CTGTPLPSLSSKCRPCLRPRRHPGHTLVPSHSVVVKGSDDEGPVGDEDTQSIIRAIQLLS
Sbjct: 181 CTGTPLPSLSSKCRPCLRPRRHPGHTLVPSHSVVVKGSDDEGPVGDEDTQSIIRAIQLLS 240
Query: 241 IQAPGYIHPWRFHHAAQDHSASGLLDGGRRLDGDLRDLHSLKSAKQPAVARRRQASVTSG 300
IQAPGYIHPWRFHHAAQDHSASGLLDGGRRLDGDLRDLHSLKSAKQPAVARRRQASVTSG
Sbjct: 241 IQAPGYIHPWRFHHAAQDHSASGLLDGGRRLDGDLRDLHSLKSAKQPAVARRRQASVTSG 300
Query: 301 LIPLHAVIVPRSMVYHKGLKPTSHKPPGSHKEILPSLATLCYSSFSLLCTEIKMKEEAAI 360
LIPLHAVIVPRSMVYHKGLKPTSHKPPGSHKEILPSLATLCYSSFSLLCTEIKMKEEAAI
Sbjct: 301 LIPLHAVIVPRSMVYHKGLKPTSHKPPGSHKEILPSLATLCYSSFSLLCTEIKMKEEAAI 360
Query: 361 AKNIYFGGQGGLYSSKELEWAWKRFLILCLIKSTIITCPPECLVLRVAGLNTDTTGTWAE 420
AKNIYFGGQGGLYSSKELEWAWKRFLILCLIKSTIITCPPECLVLRVAGLNTDTTGTWAE
Sbjct: 361 AKNIYFGGQGGLYSSKELEWAWKRFLILCLIKSTIITCPPECLVLRVAGLNTDTTGTWAE 420
Query: 421 PKAETLEAKGSVACHHHRMWMDGMGRSAQLILPDVEPKHRQLLTVYQPGLNSSSARAGML 480
PKAETLEAKGSVACHHHRMWMDGMGRSAQLILPDVEPKHRQLLTVYQPGLNSSSARAGML
Sbjct: 421 PKAETLEAKGSVACHHHRMWMDGMGRSAQLILPDVEPKHRQLLTVYQPGLNSSSARAGML 480
Query: 481 SGS 483
SGS
Sbjct: 481 SGS 483
>gi|13376335 hypothetical protein LOC79946 [Homo sapiens]
Length = 257
Score = 31.6 bits (70), Expect = 1.7
Identities = 30/101 (29%), Positives = 35/101 (34%), Gaps = 21/101 (20%)
Query: 104 WPSVLSFALVAPPESRAVAKPGACLLL-GHPGWMQEVASCQVGQTATALCEDEHGTAWRR 162
WP + + P S A PGAC+ G P G T + H R
Sbjct: 72 WPPLCCYPQSRPTAS--AAGPGACMRASGRPH----------GNTTASTAPPRHPRPRRP 119
Query: 163 GQRKRKPTMLSVCGCACVCTGTPLPSLSSKCRPCLRPRRHP 203
G +PT C G P S CR C RPRR P
Sbjct: 120 GGPALRPTPRP-------CAGPAPPPASRDCR-CRRPRRWP 152
>gi|169172508 PREDICTED: hypothetical protein [Homo sapiens]
Length = 402
Score = 31.2 bits (69), Expect = 2.2
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 97 GHAAVKLWPSVLSFALVAPPESRAVAKPGA--CLLLGHPGWMQEVASCQVGQTATALCED 154
G+AA W +VL LV P + RA PG LLL P W V SC + + ++
Sbjct: 78 GYAAANGWGTVLVSGLV-PQDPRAAPPPGGRQLLLLRPPRW---VPSCFPNSQSADISQE 133
Query: 155 EHGTAWRR 162
+ A RR
Sbjct: 134 DRKPAKRR 141
>gi|169173078 PREDICTED: hypothetical protein [Homo sapiens]
Length = 402
Score = 31.2 bits (69), Expect = 2.2
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 97 GHAAVKLWPSVLSFALVAPPESRAVAKPGA--CLLLGHPGWMQEVASCQVGQTATALCED 154
G+AA W +VL LV P + RA PG LLL P W V SC + + ++
Sbjct: 78 GYAAANGWGTVLVSGLV-PQDPRAAPPPGGRQLLLLRPPRW---VPSCFPNSQSADISQE 133
Query: 155 EHGTAWRR 162
+ A RR
Sbjct: 134 DRKPAKRR 141
>gi|195927059 axin 2 [Homo sapiens]
Length = 843
Score = 31.2 bits (69), Expect = 2.2
Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 17/83 (20%)
Query: 66 GQAEDSPQQTLTKHLDIVEDDRCPGLPNPIVG------------HAAVKLWPSVLSFALV 113
G E+ PQ L HL V + PG +P VG H + S+L
Sbjct: 429 GSYEEDPQTILDDHLSRVL--KTPGCQSPGVGRYSPRSRSPDHHHHHHSQYHSLLPPGGK 486
Query: 114 APPESRAVAKPGACLLLGHPGWM 136
PP A A PGAC LLG G++
Sbjct: 487 LPP---AAASPGACPLLGGKGFV 506
>gi|21536367 TBP-associated factor 1C isoform 2 [Homo sapiens]
Length = 775
Score = 30.8 bits (68), Expect = 2.9
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 121 VAKPGACLLLGHPGWMQEVASCQV-GQTATALCEDEHGTAWRRGQRKRKPTMLSVCGCAC 179
+ KPG L G +++V +C V G+T A+ D H W+ G ++ +PT+L
Sbjct: 189 LGKPGRIQLQGP---VRQVVTCTVQGETLLAVRSDYHCAVWKFG-KQWQPTLLQAMQVEK 244
Query: 180 VCTGTPL-PSLSSKCRPCLR 198
TG L P L + C R
Sbjct: 245 GATGISLSPHLPGELAICSR 264
>gi|33598931 scavenger receptor class F, member 1 isoform 3
precursor [Homo sapiens]
Length = 569
Score = 30.4 bits (67), Expect = 3.7
Identities = 26/93 (27%), Positives = 31/93 (33%), Gaps = 12/93 (12%)
Query: 104 WPSVLSFALVAPPESRAVAKPGACLLLGHPGWMQEVAS--CQVGQTATALCEDEHGTA-W 160
W + F P R G C PGW CQ TA A CE G
Sbjct: 125 WGARCEFPCACGPHGRCDPATGVCHC--EPGWWSSTCRRPCQCN-TAAARCEQATGACVC 181
Query: 161 RRGQRKRKPTMLSVCGCACVCTGTPLPSLSSKC 193
+ G R+ C C C G+P S +C
Sbjct: 182 KPGWWGRR------CSFRCNCHGSPCEQDSGRC 208
>gi|33598929 scavenger receptor class F, member 1 isoform 1
precursor [Homo sapiens]
Length = 830
Score = 30.4 bits (67), Expect = 3.7
Identities = 26/93 (27%), Positives = 31/93 (33%), Gaps = 12/93 (12%)
Query: 104 WPSVLSFALVAPPESRAVAKPGACLLLGHPGWMQEVAS--CQVGQTATALCEDEHGTA-W 160
W + F P R G C PGW CQ TA A CE G
Sbjct: 125 WGARCEFPCACGPHGRCDPATGVCHC--EPGWWSSTCRRPCQCN-TAAARCEQATGACVC 181
Query: 161 RRGQRKRKPTMLSVCGCACVCTGTPLPSLSSKC 193
+ G R+ C C C G+P S +C
Sbjct: 182 KPGWWGRR------CSFRCNCHGSPCEQDSGRC 208
>gi|145309306 scavenger receptor class F, member 1 isoform 5
precursor [Homo sapiens]
Length = 744
Score = 30.4 bits (67), Expect = 3.7
Identities = 26/93 (27%), Positives = 31/93 (33%), Gaps = 12/93 (12%)
Query: 104 WPSVLSFALVAPPESRAVAKPGACLLLGHPGWMQEVAS--CQVGQTATALCEDEHGTA-W 160
W + F P R G C PGW CQ TA A CE G
Sbjct: 125 WGARCEFPCACGPHGRCDPATGVCHC--EPGWWSSTCRRPCQCN-TAAARCEQATGACVC 181
Query: 161 RRGQRKRKPTMLSVCGCACVCTGTPLPSLSSKC 193
+ G R+ C C C G+P S +C
Sbjct: 182 KPGWWGRR------CSFRCNCHGSPCEQDSGRC 208
>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
[Homo sapiens]
Length = 6907
Score = 30.4 bits (67), Expect = 3.7
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 61 TDQREGQAEDSPQQ--TLTKHLDIVEDDRCPGLPNPIVGHAAVKLWPSVLSFALVAPPES 118
+D + +AE SPQ +L KH +E+DR IV A K+ S S A + P+S
Sbjct: 4126 SDNGDEKAEPSPQSWSSLWKHDKDMEEDRASSSSGTIVQEAYGKISTSDNSMAQILTPDS 4185
Query: 119 RAVAKPGACLL 129
+ C L
Sbjct: 4186 LNTEQGPECSL 4196
>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
[Homo sapiens]
Length = 6885
Score = 30.4 bits (67), Expect = 3.7
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 61 TDQREGQAEDSPQQ--TLTKHLDIVEDDRCPGLPNPIVGHAAVKLWPSVLSFALVAPPES 118
+D + +AE SPQ +L KH +E+DR IV A K+ S S A + P+S
Sbjct: 4126 SDNGDEKAEPSPQSWSSLWKHDKDMEEDRASSSSGTIVQEAYGKISTSDNSMAQILTPDS 4185
Query: 119 RAVAKPGACLL 129
+ C L
Sbjct: 4186 LNTEQGPECSL 4196
>gi|197333706 leucine rich repeat containing 8 family, member D
[Homo sapiens]
Length = 858
Score = 30.4 bits (67), Expect = 3.7
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 58 TGCTDQREGQAEDSPQQTLTKHLDIVEDDRCPGLPNPIVGHAAVK 102
T C D E + + QTL KH+ D+ P P++ K
Sbjct: 216 TACEDSEENKQRITGAQTLPKHVSTSSDEGSPSASTPMINKTGFK 260
>gi|34222199 leucine rich repeat containing 8 family, member D [Homo
sapiens]
Length = 858
Score = 30.4 bits (67), Expect = 3.7
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 58 TGCTDQREGQAEDSPQQTLTKHLDIVEDDRCPGLPNPIVGHAAVK 102
T C D E + + QTL KH+ D+ P P++ K
Sbjct: 216 TACEDSEENKQRITGAQTLPKHVSTSSDEGSPSASTPMINKTGFK 260
>gi|148528975 LON peptidase N-terminal domain and ring finger 2
[Homo sapiens]
Length = 754
Score = 30.0 bits (66), Expect = 4.9
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 8 LGHALVDAFVLRPHAEHAQGPAGEPEALAGDEGHSIPQPQHGGRGVPTHLTGC 60
L LV A LR A+ P GEPE A EG P+P+ P L GC
Sbjct: 98 LAGGLVRAVGLRDRPLSAENPGGEPE--APGEGGPAPEPR-----APRDLLGC 143
>gi|239752220 PREDICTED: hypothetical protein XP_002348149 [Homo
sapiens]
Length = 305
Score = 29.3 bits (64), Expect = 8.3
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 27 GPAGEPEALAGDEGHSIPQPQHGGRGVPTHLTGCTDQREGQAEDSPQQTLTKHLDIVEDD 86
G GE E L +G + H G+G+P T EG+ P + D E D
Sbjct: 39 GGHGEAEVL--QQGGEEEEELHAGQGLPEACTAACG--EGRGVSEPGSWVIPLQDSTEGD 94
Query: 87 RCPGLP 92
R PG P
Sbjct: 95 REPGSP 100
>gi|239746741 PREDICTED: hypothetical protein XP_002343822 [Homo
sapiens]
Length = 306
Score = 29.3 bits (64), Expect = 8.3
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 27 GPAGEPEALAGDEGHSIPQPQHGGRGVPTHLTGCTDQREGQAEDSPQQTLTKHLDIVEDD 86
G GE E L +G + H G+G+P T EG+ P + D E D
Sbjct: 39 GGHGEAEVL--QQGGEEEEELHAGQGLPEACTAACG--EGRGVSEPGSWVIPLQDSTEGD 94
Query: 87 RCPGLP 92
R PG P
Sbjct: 95 REPGSP 100
>gi|31742490 gamma-aminobutyric acid A receptor, gamma 1 precursor
[Homo sapiens]
Length = 465
Score = 29.3 bits (64), Expect = 8.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 192 KCRPCLRPRRHPGHTLVPSHSVVVKGSDDEG 222
K + + P HPG TL+P +++ V DD G
Sbjct: 373 KNKASMTPGLHPGSTLIPMNNISVPQEDDYG 403
>gi|28557802 sterile alpha motif domain containing 14 [Homo sapiens]
Length = 445
Score = 29.3 bits (64), Expect = 8.3
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 23 EHAQGPAGEPEALAGDEGHSIPQPQHGGRGVPTHLTGCTD----QREGQAEDSPQQTLTK 78
E + GP G+ G H + P H G G P + C D +R ++ P LT+
Sbjct: 62 EGSDGPGGKVTDGCGSPLHRLRSPLHSGPGSPAGGSFCLDPPGLRRSLDEDEPPPSPLTR 121
Query: 79 H 79
+
Sbjct: 122 Y 122
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,975,399
Number of Sequences: 37866
Number of extensions: 1200781
Number of successful extensions: 3128
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3120
Number of HSP's gapped (non-prelim): 24
length of query: 483
length of database: 18,247,518
effective HSP length: 106
effective length of query: 377
effective length of database: 14,233,722
effective search space: 5366113194
effective search space used: 5366113194
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.