Guide to the Human Genome
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Search of human proteins with 239753625

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239753625 PREDICTED: hypothetical protein [Homo sapiens]
         (483 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753625 PREDICTED: hypothetical protein [Homo sapiens]          1003   0.0  
gi|239748200 PREDICTED: hypothetical protein XP_002346593 [Homo ...  1003   0.0  
gi|239742098 PREDICTED: hypothetical protein XP_002342434 [Homo ...  1003   0.0  
gi|13376335 hypothetical protein LOC79946 [Homo sapiens]               32   1.7  
gi|169172508 PREDICTED: hypothetical protein [Homo sapiens]            31   2.2  
gi|169173078 PREDICTED: hypothetical protein [Homo sapiens]            31   2.2  
gi|195927059 axin 2 [Homo sapiens]                                     31   2.2  
gi|21536367 TBP-associated factor 1C isoform 2 [Homo sapiens]          31   2.9  
gi|33598931 scavenger receptor class F, member 1 isoform 3 precu...    30   3.7  
gi|33598929 scavenger receptor class F, member 1 isoform 1 precu...    30   3.7  
gi|145309306 scavenger receptor class F, member 1 isoform 5 prec...    30   3.7  
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof...    30   3.7  
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof...    30   3.7  
gi|197333706 leucine rich repeat containing 8 family, member D [...    30   3.7  
gi|34222199 leucine rich repeat containing 8 family, member D [H...    30   3.7  
gi|148528975 LON peptidase N-terminal domain and ring finger 2 [...    30   4.9  
gi|239752220 PREDICTED: hypothetical protein XP_002348149 [Homo ...    29   8.3  
gi|239746741 PREDICTED: hypothetical protein XP_002343822 [Homo ...    29   8.3  
gi|31742490 gamma-aminobutyric acid A receptor, gamma 1 precurso...    29   8.3  
gi|28557802 sterile alpha motif domain containing 14 [Homo sapiens]    29   8.3  

>gi|239753625 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 483

 Score = 1003 bits (2593), Expect = 0.0
 Identities = 483/483 (100%), Positives = 483/483 (100%)

Query: 1   MGAPNLVLGHALVDAFVLRPHAEHAQGPAGEPEALAGDEGHSIPQPQHGGRGVPTHLTGC 60
           MGAPNLVLGHALVDAFVLRPHAEHAQGPAGEPEALAGDEGHSIPQPQHGGRGVPTHLTGC
Sbjct: 1   MGAPNLVLGHALVDAFVLRPHAEHAQGPAGEPEALAGDEGHSIPQPQHGGRGVPTHLTGC 60

Query: 61  TDQREGQAEDSPQQTLTKHLDIVEDDRCPGLPNPIVGHAAVKLWPSVLSFALVAPPESRA 120
           TDQREGQAEDSPQQTLTKHLDIVEDDRCPGLPNPIVGHAAVKLWPSVLSFALVAPPESRA
Sbjct: 61  TDQREGQAEDSPQQTLTKHLDIVEDDRCPGLPNPIVGHAAVKLWPSVLSFALVAPPESRA 120

Query: 121 VAKPGACLLLGHPGWMQEVASCQVGQTATALCEDEHGTAWRRGQRKRKPTMLSVCGCACV 180
           VAKPGACLLLGHPGWMQEVASCQVGQTATALCEDEHGTAWRRGQRKRKPTMLSVCGCACV
Sbjct: 121 VAKPGACLLLGHPGWMQEVASCQVGQTATALCEDEHGTAWRRGQRKRKPTMLSVCGCACV 180

Query: 181 CTGTPLPSLSSKCRPCLRPRRHPGHTLVPSHSVVVKGSDDEGPVGDEDTQSIIRAIQLLS 240
           CTGTPLPSLSSKCRPCLRPRRHPGHTLVPSHSVVVKGSDDEGPVGDEDTQSIIRAIQLLS
Sbjct: 181 CTGTPLPSLSSKCRPCLRPRRHPGHTLVPSHSVVVKGSDDEGPVGDEDTQSIIRAIQLLS 240

Query: 241 IQAPGYIHPWRFHHAAQDHSASGLLDGGRRLDGDLRDLHSLKSAKQPAVARRRQASVTSG 300
           IQAPGYIHPWRFHHAAQDHSASGLLDGGRRLDGDLRDLHSLKSAKQPAVARRRQASVTSG
Sbjct: 241 IQAPGYIHPWRFHHAAQDHSASGLLDGGRRLDGDLRDLHSLKSAKQPAVARRRQASVTSG 300

Query: 301 LIPLHAVIVPRSMVYHKGLKPTSHKPPGSHKEILPSLATLCYSSFSLLCTEIKMKEEAAI 360
           LIPLHAVIVPRSMVYHKGLKPTSHKPPGSHKEILPSLATLCYSSFSLLCTEIKMKEEAAI
Sbjct: 301 LIPLHAVIVPRSMVYHKGLKPTSHKPPGSHKEILPSLATLCYSSFSLLCTEIKMKEEAAI 360

Query: 361 AKNIYFGGQGGLYSSKELEWAWKRFLILCLIKSTIITCPPECLVLRVAGLNTDTTGTWAE 420
           AKNIYFGGQGGLYSSKELEWAWKRFLILCLIKSTIITCPPECLVLRVAGLNTDTTGTWAE
Sbjct: 361 AKNIYFGGQGGLYSSKELEWAWKRFLILCLIKSTIITCPPECLVLRVAGLNTDTTGTWAE 420

Query: 421 PKAETLEAKGSVACHHHRMWMDGMGRSAQLILPDVEPKHRQLLTVYQPGLNSSSARAGML 480
           PKAETLEAKGSVACHHHRMWMDGMGRSAQLILPDVEPKHRQLLTVYQPGLNSSSARAGML
Sbjct: 421 PKAETLEAKGSVACHHHRMWMDGMGRSAQLILPDVEPKHRQLLTVYQPGLNSSSARAGML 480

Query: 481 SGS 483
           SGS
Sbjct: 481 SGS 483


>gi|239748200 PREDICTED: hypothetical protein XP_002346593 [Homo
           sapiens]
          Length = 483

 Score = 1003 bits (2593), Expect = 0.0
 Identities = 483/483 (100%), Positives = 483/483 (100%)

Query: 1   MGAPNLVLGHALVDAFVLRPHAEHAQGPAGEPEALAGDEGHSIPQPQHGGRGVPTHLTGC 60
           MGAPNLVLGHALVDAFVLRPHAEHAQGPAGEPEALAGDEGHSIPQPQHGGRGVPTHLTGC
Sbjct: 1   MGAPNLVLGHALVDAFVLRPHAEHAQGPAGEPEALAGDEGHSIPQPQHGGRGVPTHLTGC 60

Query: 61  TDQREGQAEDSPQQTLTKHLDIVEDDRCPGLPNPIVGHAAVKLWPSVLSFALVAPPESRA 120
           TDQREGQAEDSPQQTLTKHLDIVEDDRCPGLPNPIVGHAAVKLWPSVLSFALVAPPESRA
Sbjct: 61  TDQREGQAEDSPQQTLTKHLDIVEDDRCPGLPNPIVGHAAVKLWPSVLSFALVAPPESRA 120

Query: 121 VAKPGACLLLGHPGWMQEVASCQVGQTATALCEDEHGTAWRRGQRKRKPTMLSVCGCACV 180
           VAKPGACLLLGHPGWMQEVASCQVGQTATALCEDEHGTAWRRGQRKRKPTMLSVCGCACV
Sbjct: 121 VAKPGACLLLGHPGWMQEVASCQVGQTATALCEDEHGTAWRRGQRKRKPTMLSVCGCACV 180

Query: 181 CTGTPLPSLSSKCRPCLRPRRHPGHTLVPSHSVVVKGSDDEGPVGDEDTQSIIRAIQLLS 240
           CTGTPLPSLSSKCRPCLRPRRHPGHTLVPSHSVVVKGSDDEGPVGDEDTQSIIRAIQLLS
Sbjct: 181 CTGTPLPSLSSKCRPCLRPRRHPGHTLVPSHSVVVKGSDDEGPVGDEDTQSIIRAIQLLS 240

Query: 241 IQAPGYIHPWRFHHAAQDHSASGLLDGGRRLDGDLRDLHSLKSAKQPAVARRRQASVTSG 300
           IQAPGYIHPWRFHHAAQDHSASGLLDGGRRLDGDLRDLHSLKSAKQPAVARRRQASVTSG
Sbjct: 241 IQAPGYIHPWRFHHAAQDHSASGLLDGGRRLDGDLRDLHSLKSAKQPAVARRRQASVTSG 300

Query: 301 LIPLHAVIVPRSMVYHKGLKPTSHKPPGSHKEILPSLATLCYSSFSLLCTEIKMKEEAAI 360
           LIPLHAVIVPRSMVYHKGLKPTSHKPPGSHKEILPSLATLCYSSFSLLCTEIKMKEEAAI
Sbjct: 301 LIPLHAVIVPRSMVYHKGLKPTSHKPPGSHKEILPSLATLCYSSFSLLCTEIKMKEEAAI 360

Query: 361 AKNIYFGGQGGLYSSKELEWAWKRFLILCLIKSTIITCPPECLVLRVAGLNTDTTGTWAE 420
           AKNIYFGGQGGLYSSKELEWAWKRFLILCLIKSTIITCPPECLVLRVAGLNTDTTGTWAE
Sbjct: 361 AKNIYFGGQGGLYSSKELEWAWKRFLILCLIKSTIITCPPECLVLRVAGLNTDTTGTWAE 420

Query: 421 PKAETLEAKGSVACHHHRMWMDGMGRSAQLILPDVEPKHRQLLTVYQPGLNSSSARAGML 480
           PKAETLEAKGSVACHHHRMWMDGMGRSAQLILPDVEPKHRQLLTVYQPGLNSSSARAGML
Sbjct: 421 PKAETLEAKGSVACHHHRMWMDGMGRSAQLILPDVEPKHRQLLTVYQPGLNSSSARAGML 480

Query: 481 SGS 483
           SGS
Sbjct: 481 SGS 483


>gi|239742098 PREDICTED: hypothetical protein XP_002342434 [Homo
           sapiens]
          Length = 483

 Score = 1003 bits (2593), Expect = 0.0
 Identities = 483/483 (100%), Positives = 483/483 (100%)

Query: 1   MGAPNLVLGHALVDAFVLRPHAEHAQGPAGEPEALAGDEGHSIPQPQHGGRGVPTHLTGC 60
           MGAPNLVLGHALVDAFVLRPHAEHAQGPAGEPEALAGDEGHSIPQPQHGGRGVPTHLTGC
Sbjct: 1   MGAPNLVLGHALVDAFVLRPHAEHAQGPAGEPEALAGDEGHSIPQPQHGGRGVPTHLTGC 60

Query: 61  TDQREGQAEDSPQQTLTKHLDIVEDDRCPGLPNPIVGHAAVKLWPSVLSFALVAPPESRA 120
           TDQREGQAEDSPQQTLTKHLDIVEDDRCPGLPNPIVGHAAVKLWPSVLSFALVAPPESRA
Sbjct: 61  TDQREGQAEDSPQQTLTKHLDIVEDDRCPGLPNPIVGHAAVKLWPSVLSFALVAPPESRA 120

Query: 121 VAKPGACLLLGHPGWMQEVASCQVGQTATALCEDEHGTAWRRGQRKRKPTMLSVCGCACV 180
           VAKPGACLLLGHPGWMQEVASCQVGQTATALCEDEHGTAWRRGQRKRKPTMLSVCGCACV
Sbjct: 121 VAKPGACLLLGHPGWMQEVASCQVGQTATALCEDEHGTAWRRGQRKRKPTMLSVCGCACV 180

Query: 181 CTGTPLPSLSSKCRPCLRPRRHPGHTLVPSHSVVVKGSDDEGPVGDEDTQSIIRAIQLLS 240
           CTGTPLPSLSSKCRPCLRPRRHPGHTLVPSHSVVVKGSDDEGPVGDEDTQSIIRAIQLLS
Sbjct: 181 CTGTPLPSLSSKCRPCLRPRRHPGHTLVPSHSVVVKGSDDEGPVGDEDTQSIIRAIQLLS 240

Query: 241 IQAPGYIHPWRFHHAAQDHSASGLLDGGRRLDGDLRDLHSLKSAKQPAVARRRQASVTSG 300
           IQAPGYIHPWRFHHAAQDHSASGLLDGGRRLDGDLRDLHSLKSAKQPAVARRRQASVTSG
Sbjct: 241 IQAPGYIHPWRFHHAAQDHSASGLLDGGRRLDGDLRDLHSLKSAKQPAVARRRQASVTSG 300

Query: 301 LIPLHAVIVPRSMVYHKGLKPTSHKPPGSHKEILPSLATLCYSSFSLLCTEIKMKEEAAI 360
           LIPLHAVIVPRSMVYHKGLKPTSHKPPGSHKEILPSLATLCYSSFSLLCTEIKMKEEAAI
Sbjct: 301 LIPLHAVIVPRSMVYHKGLKPTSHKPPGSHKEILPSLATLCYSSFSLLCTEIKMKEEAAI 360

Query: 361 AKNIYFGGQGGLYSSKELEWAWKRFLILCLIKSTIITCPPECLVLRVAGLNTDTTGTWAE 420
           AKNIYFGGQGGLYSSKELEWAWKRFLILCLIKSTIITCPPECLVLRVAGLNTDTTGTWAE
Sbjct: 361 AKNIYFGGQGGLYSSKELEWAWKRFLILCLIKSTIITCPPECLVLRVAGLNTDTTGTWAE 420

Query: 421 PKAETLEAKGSVACHHHRMWMDGMGRSAQLILPDVEPKHRQLLTVYQPGLNSSSARAGML 480
           PKAETLEAKGSVACHHHRMWMDGMGRSAQLILPDVEPKHRQLLTVYQPGLNSSSARAGML
Sbjct: 421 PKAETLEAKGSVACHHHRMWMDGMGRSAQLILPDVEPKHRQLLTVYQPGLNSSSARAGML 480

Query: 481 SGS 483
           SGS
Sbjct: 481 SGS 483


>gi|13376335 hypothetical protein LOC79946 [Homo sapiens]
          Length = 257

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 30/101 (29%), Positives = 35/101 (34%), Gaps = 21/101 (20%)

Query: 104 WPSVLSFALVAPPESRAVAKPGACLLL-GHPGWMQEVASCQVGQTATALCEDEHGTAWRR 162
           WP +  +    P  S   A PGAC+   G P           G T  +     H    R 
Sbjct: 72  WPPLCCYPQSRPTAS--AAGPGACMRASGRPH----------GNTTASTAPPRHPRPRRP 119

Query: 163 GQRKRKPTMLSVCGCACVCTGTPLPSLSSKCRPCLRPRRHP 203
           G    +PT          C G   P  S  CR C RPRR P
Sbjct: 120 GGPALRPTPRP-------CAGPAPPPASRDCR-CRRPRRWP 152


>gi|169172508 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 402

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 97  GHAAVKLWPSVLSFALVAPPESRAVAKPGA--CLLLGHPGWMQEVASCQVGQTATALCED 154
           G+AA   W +VL   LV P + RA   PG    LLL  P W   V SC     +  + ++
Sbjct: 78  GYAAANGWGTVLVSGLV-PQDPRAAPPPGGRQLLLLRPPRW---VPSCFPNSQSADISQE 133

Query: 155 EHGTAWRR 162
           +   A RR
Sbjct: 134 DRKPAKRR 141


>gi|169173078 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 402

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 97  GHAAVKLWPSVLSFALVAPPESRAVAKPGA--CLLLGHPGWMQEVASCQVGQTATALCED 154
           G+AA   W +VL   LV P + RA   PG    LLL  P W   V SC     +  + ++
Sbjct: 78  GYAAANGWGTVLVSGLV-PQDPRAAPPPGGRQLLLLRPPRW---VPSCFPNSQSADISQE 133

Query: 155 EHGTAWRR 162
           +   A RR
Sbjct: 134 DRKPAKRR 141


>gi|195927059 axin 2 [Homo sapiens]
          Length = 843

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 17/83 (20%)

Query: 66  GQAEDSPQQTLTKHLDIVEDDRCPGLPNPIVG------------HAAVKLWPSVLSFALV 113
           G  E+ PQ  L  HL  V   + PG  +P VG            H     + S+L     
Sbjct: 429 GSYEEDPQTILDDHLSRVL--KTPGCQSPGVGRYSPRSRSPDHHHHHHSQYHSLLPPGGK 486

Query: 114 APPESRAVAKPGACLLLGHPGWM 136
            PP   A A PGAC LLG  G++
Sbjct: 487 LPP---AAASPGACPLLGGKGFV 506


>gi|21536367 TBP-associated factor 1C isoform 2 [Homo sapiens]
          Length = 775

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 121 VAKPGACLLLGHPGWMQEVASCQV-GQTATALCEDEHGTAWRRGQRKRKPTMLSVCGCAC 179
           + KPG   L G    +++V +C V G+T  A+  D H   W+ G ++ +PT+L       
Sbjct: 189 LGKPGRIQLQGP---VRQVVTCTVQGETLLAVRSDYHCAVWKFG-KQWQPTLLQAMQVEK 244

Query: 180 VCTGTPL-PSLSSKCRPCLR 198
             TG  L P L  +   C R
Sbjct: 245 GATGISLSPHLPGELAICSR 264


>gi|33598931 scavenger receptor class F, member 1 isoform 3
           precursor [Homo sapiens]
          Length = 569

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 26/93 (27%), Positives = 31/93 (33%), Gaps = 12/93 (12%)

Query: 104 WPSVLSFALVAPPESRAVAKPGACLLLGHPGWMQEVAS--CQVGQTATALCEDEHGTA-W 160
           W +   F     P  R     G C     PGW        CQ   TA A CE   G    
Sbjct: 125 WGARCEFPCACGPHGRCDPATGVCHC--EPGWWSSTCRRPCQCN-TAAARCEQATGACVC 181

Query: 161 RRGQRKRKPTMLSVCGCACVCTGTPLPSLSSKC 193
           + G   R+      C   C C G+P    S +C
Sbjct: 182 KPGWWGRR------CSFRCNCHGSPCEQDSGRC 208


>gi|33598929 scavenger receptor class F, member 1 isoform 1
           precursor [Homo sapiens]
          Length = 830

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 26/93 (27%), Positives = 31/93 (33%), Gaps = 12/93 (12%)

Query: 104 WPSVLSFALVAPPESRAVAKPGACLLLGHPGWMQEVAS--CQVGQTATALCEDEHGTA-W 160
           W +   F     P  R     G C     PGW        CQ   TA A CE   G    
Sbjct: 125 WGARCEFPCACGPHGRCDPATGVCHC--EPGWWSSTCRRPCQCN-TAAARCEQATGACVC 181

Query: 161 RRGQRKRKPTMLSVCGCACVCTGTPLPSLSSKC 193
           + G   R+      C   C C G+P    S +C
Sbjct: 182 KPGWWGRR------CSFRCNCHGSPCEQDSGRC 208


>gi|145309306 scavenger receptor class F, member 1 isoform 5
           precursor [Homo sapiens]
          Length = 744

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 26/93 (27%), Positives = 31/93 (33%), Gaps = 12/93 (12%)

Query: 104 WPSVLSFALVAPPESRAVAKPGACLLLGHPGWMQEVAS--CQVGQTATALCEDEHGTA-W 160
           W +   F     P  R     G C     PGW        CQ   TA A CE   G    
Sbjct: 125 WGARCEFPCACGPHGRCDPATGVCHC--EPGWWSSTCRRPCQCN-TAAARCEQATGACVC 181

Query: 161 RRGQRKRKPTMLSVCGCACVCTGTPLPSLSSKC 193
           + G   R+      C   C C G+P    S +C
Sbjct: 182 KPGWWGRR------CSFRCNCHGSPCEQDSGRC 208


>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
            [Homo sapiens]
          Length = 6907

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 61   TDQREGQAEDSPQQ--TLTKHLDIVEDDRCPGLPNPIVGHAAVKLWPSVLSFALVAPPES 118
            +D  + +AE SPQ   +L KH   +E+DR       IV  A  K+  S  S A +  P+S
Sbjct: 4126 SDNGDEKAEPSPQSWSSLWKHDKDMEEDRASSSSGTIVQEAYGKISTSDNSMAQILTPDS 4185

Query: 119  RAVAKPGACLL 129
                +   C L
Sbjct: 4186 LNTEQGPECSL 4196


>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
            [Homo sapiens]
          Length = 6885

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 61   TDQREGQAEDSPQQ--TLTKHLDIVEDDRCPGLPNPIVGHAAVKLWPSVLSFALVAPPES 118
            +D  + +AE SPQ   +L KH   +E+DR       IV  A  K+  S  S A +  P+S
Sbjct: 4126 SDNGDEKAEPSPQSWSSLWKHDKDMEEDRASSSSGTIVQEAYGKISTSDNSMAQILTPDS 4185

Query: 119  RAVAKPGACLL 129
                +   C L
Sbjct: 4186 LNTEQGPECSL 4196


>gi|197333706 leucine rich repeat containing 8 family, member D
           [Homo sapiens]
          Length = 858

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 13/45 (28%), Positives = 19/45 (42%)

Query: 58  TGCTDQREGQAEDSPQQTLTKHLDIVEDDRCPGLPNPIVGHAAVK 102
           T C D  E +   +  QTL KH+    D+  P    P++     K
Sbjct: 216 TACEDSEENKQRITGAQTLPKHVSTSSDEGSPSASTPMINKTGFK 260


>gi|34222199 leucine rich repeat containing 8 family, member D [Homo
           sapiens]
          Length = 858

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 13/45 (28%), Positives = 19/45 (42%)

Query: 58  TGCTDQREGQAEDSPQQTLTKHLDIVEDDRCPGLPNPIVGHAAVK 102
           T C D  E +   +  QTL KH+    D+  P    P++     K
Sbjct: 216 TACEDSEENKQRITGAQTLPKHVSTSSDEGSPSASTPMINKTGFK 260


>gi|148528975 LON peptidase N-terminal domain and ring finger 2
           [Homo sapiens]
          Length = 754

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 7/53 (13%)

Query: 8   LGHALVDAFVLRPHAEHAQGPAGEPEALAGDEGHSIPQPQHGGRGVPTHLTGC 60
           L   LV A  LR     A+ P GEPE  A  EG   P+P+      P  L GC
Sbjct: 98  LAGGLVRAVGLRDRPLSAENPGGEPE--APGEGGPAPEPR-----APRDLLGC 143


>gi|239752220 PREDICTED: hypothetical protein XP_002348149 [Homo
           sapiens]
          Length = 305

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 27  GPAGEPEALAGDEGHSIPQPQHGGRGVPTHLTGCTDQREGQAEDSPQQTLTKHLDIVEDD 86
           G  GE E L   +G    +  H G+G+P   T      EG+    P   +    D  E D
Sbjct: 39  GGHGEAEVL--QQGGEEEEELHAGQGLPEACTAACG--EGRGVSEPGSWVIPLQDSTEGD 94

Query: 87  RCPGLP 92
           R PG P
Sbjct: 95  REPGSP 100


>gi|239746741 PREDICTED: hypothetical protein XP_002343822 [Homo
           sapiens]
          Length = 306

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 27  GPAGEPEALAGDEGHSIPQPQHGGRGVPTHLTGCTDQREGQAEDSPQQTLTKHLDIVEDD 86
           G  GE E L   +G    +  H G+G+P   T      EG+    P   +    D  E D
Sbjct: 39  GGHGEAEVL--QQGGEEEEELHAGQGLPEACTAACG--EGRGVSEPGSWVIPLQDSTEGD 94

Query: 87  RCPGLP 92
           R PG P
Sbjct: 95  REPGSP 100


>gi|31742490 gamma-aminobutyric acid A receptor, gamma 1 precursor
           [Homo sapiens]
          Length = 465

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 192 KCRPCLRPRRHPGHTLVPSHSVVVKGSDDEG 222
           K +  + P  HPG TL+P +++ V   DD G
Sbjct: 373 KNKASMTPGLHPGSTLIPMNNISVPQEDDYG 403


>gi|28557802 sterile alpha motif domain containing 14 [Homo sapiens]
          Length = 445

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 23  EHAQGPAGEPEALAGDEGHSIPQPQHGGRGVPTHLTGCTD----QREGQAEDSPQQTLTK 78
           E + GP G+     G   H +  P H G G P   + C D    +R    ++ P   LT+
Sbjct: 62  EGSDGPGGKVTDGCGSPLHRLRSPLHSGPGSPAGGSFCLDPPGLRRSLDEDEPPPSPLTR 121

Query: 79  H 79
           +
Sbjct: 122 Y 122


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.134    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,975,399
Number of Sequences: 37866
Number of extensions: 1200781
Number of successful extensions: 3128
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3120
Number of HSP's gapped (non-prelim): 24
length of query: 483
length of database: 18,247,518
effective HSP length: 106
effective length of query: 377
effective length of database: 14,233,722
effective search space: 5366113194
effective search space used: 5366113194
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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