Guide to the Human Genome
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Name: LOC100288391 Sequence: fasta or formatted (483aa) NCBI GI: 239742098
Description:

PREDICTED: hypothetical protein XP_002342434

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         44           2
 C cysteine            3.5         17           1
 D aspartate           4.1         20           2
 E glutamate           5.0         24           2
 F phenylalanine       1.2          6           1
 G glycine             9.3         45           2
 H histidine           5.4         26           3
 I isoleucine          3.9         19           2
 K lysine              4.6         22           1
 L leucine            10.8         52           3
 M methionine          1.9          9           1
 N asparagine          1.0          5           1
 P proline             8.1         39           2
 Q glutamine           4.3         21           2
 R arginine            5.8         28           3
 S serine              7.9         38           3
 T threonine           5.2         25           2
 V valine              6.0         29           3
 W tryptophan          1.7          8           1
 Y tyrosine            1.2          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342434 
LOC100292391          1.000   PREDICTED: hypothetical protein 
LOC100290001          1.000   PREDICTED: hypothetical protein XP_002346593 
C10orf95              0.007   hypothetical protein LOC79946 
LOC100129098          0.006   PREDICTED: hypothetical protein 
LOC100129098          0.006   PREDICTED: hypothetical protein 
AXIN2                 0.006   axin 2 
TAF1C                 0.006   TBP-associated factor 1C isoform 2 
SCARF1                0.005   scavenger receptor class F, member 1 isoform 3 precu...
SCARF1                0.005   scavenger receptor class F, member 1 isoform 1 precu...
SCARF1                0.005   scavenger receptor class F, member 1 isoform 5 prec...
SYNE2                 0.005   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.005   spectrin repeat containing, nuclear envelope 2 isof...
LRRC8D                0.005   leucine rich repeat containing 8 family, member D [...
LRRC8D                0.005   leucine rich repeat containing 8 family, member D [H...
LONRF2                0.005   LON peptidase N-terminal domain and ring finger 2 [...
LOC100290286          0.004   PREDICTED: hypothetical protein XP_002348149 
LOC100289204          0.004   PREDICTED: hypothetical protein XP_002343822 
GABRG1                0.004   gamma-aminobutyric acid A receptor, gamma 1 precurso...
SAMD14                0.004   sterile alpha motif domain containing 14 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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