Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100129282 Sequence: fasta or formatted (258aa) NCBI GI: 239753600
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {250aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            20.9         54           4
 C cysteine            0.4          1           1
 D aspartate           3.1          8           1
 E glutamate           4.3         11           1
 F phenylalanine       1.6          4           1
 G glycine             7.4         19           1
 H histidine           4.7         12           2
 I isoleucine          0.0          0           0
 K lysine              0.8          2           1
 L leucine            12.8         33           3
 M methionine          0.4          1           1
 N asparagine          0.0          0           0
 P proline             5.4         14           1
 Q glutamine           8.1         21           2
 R arginine           15.5         40           2
 S serine              1.9          5           2
 T threonine           1.9          5           1
 V valine              9.3         24           2
 W tryptophan          1.2          3           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129282          0.945   PREDICTED: hypothetical protein 
RILP                  0.021   Rab interacting lysosomal protein 
MYH14                 0.017   myosin, heavy chain 14 isoform 1 
MYH14                 0.017   myosin, heavy chain 14 isoform 2 
MYH14                 0.017   myosin, heavy chain 14 isoform 3 
SPTBN5                0.017   spectrin, beta, non-erythrocytic 5 
DNAJC7                0.015   DnaJ (Hsp40) homolog, subfamily C, member 7 isoform...
ARHGEF2               0.013   Rho/Rac guanine nucleotide exchange factor 2 isofor...
ARHGEF2               0.013   Rho/Rac guanine nucleotide exchange factor 2 isofor...
ARHGEF2               0.013   Rho/Rac guanine nucleotide exchange factor 2 isoofor...
JPH4                  0.013   junctophilin 4 
JPH4                  0.013   junctophilin 4 
PCNXL3                0.013   pecanex-like 3 
LOC100290403          0.010   PREDICTED: hypothetical protein XP_002346677 
LOC100288644          0.010   PREDICTED: hypothetical protein XP_002342521 
LAMB2                 0.010   laminin, beta 2 precursor 
DNAJC7                0.010   DnaJ (Hsp40) homolog, subfamily C, member 7 isoform...
LOC100293652          0.010   PREDICTED: hypothetical protein 
LOC100293795          0.010   PREDICTED: hypothetical protein 
LOC100291016          0.010   PREDICTED: hypothetical protein XP_002347804 
LOC100287397          0.010   PREDICTED: hypothetical protein 
LOC100287809          0.010   PREDICTED: hypothetical protein XP_002343597 
LOC100287397          0.010   PREDICTED: hypothetical protein XP_002343164 
PPFIA3                0.010   PTPRF interacting protein alpha 3 
LOC100131774          0.010   PREDICTED: hypothetical protein 
LOC100130667          0.008   PREDICTED: hypothetical protein 
LOC100130667          0.008   PREDICTED: hypothetical protein 
LOC100130667          0.008   PREDICTED: hypothetical protein 
CEP250                0.008   centrosomal protein 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press