Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239753550
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753550 PREDICTED: hypothetical protein XP_002345694 [Homo
sapiens]
(199 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753550 PREDICTED: hypothetical protein XP_002345694 [Homo ... 439 e-124
gi|239748112 PREDICTED: hypothetical protein [Homo sapiens] 439 e-124
gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo ... 31 0.79
gi|116174742 family with sequence similarity 20, member C [Homo ... 31 0.79
gi|239757254 PREDICTED: hypothetical protein [Homo sapiens] 30 1.0
gi|12751477 forkhead box L2 [Homo sapiens] 30 1.8
gi|239755473 PREDICTED: hypothetical protein [Homo sapiens] 29 3.0
gi|239749968 PREDICTED: hypothetical protein XP_002347245 [Homo ... 29 3.0
gi|4758316 ets variant gene 5 (ets-related molecule) [Homo sapiens] 29 3.0
gi|223278356 glutamate receptor, ionotropic, N-methyl-D-aspartat... 28 3.9
gi|239756172 PREDICTED: hypothetical protein [Homo sapiens] 28 3.9
gi|239754162 PREDICTED: hypothetical protein [Homo sapiens] 28 3.9
gi|239750674 PREDICTED: hypothetical protein [Homo sapiens] 28 3.9
gi|239748672 PREDICTED: hypothetical protein XP_002346774 [Homo ... 28 3.9
gi|239744984 PREDICTED: hypothetical protein XP_002343349 [Homo ... 28 3.9
gi|239742697 PREDICTED: hypothetical protein XP_002342608 [Homo ... 28 3.9
gi|157738645 plexin A4 isoform 1 [Homo sapiens] 28 5.1
gi|222136583 inositol polyphosphate phosphatase-like 1 [Homo sap... 28 5.1
gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens] 28 5.1
gi|110346438 FERM and PDZ domain containing 2 isoform 1 [Homo sa... 28 5.1
gi|110346436 FERM and PDZ domain containing 2 isoform 3 [Homo sa... 28 5.1
gi|224028289 tetratricopeptide repeat domain 28 [Homo sapiens] 28 6.7
gi|145699139 cartilage intermediate layer protein 2 [Homo sapiens] 28 6.7
gi|6912734 transportin 3 [Homo sapiens] 27 8.8
gi|239047498 slingshot 1 isoform 3 [Homo sapiens] 27 8.8
gi|239047441 slingshot 1 isoform 2 [Homo sapiens] 27 8.8
>gi|239753550 PREDICTED: hypothetical protein XP_002345694 [Homo
sapiens]
Length = 199
Score = 439 bits (1130), Expect = e-124
Identities = 199/199 (100%), Positives = 199/199 (100%)
Query: 1 MDWSGYDLLLLIHVRKWCLAWDPVCQNHSRPGRHVQLGLGRTGLHDRAGEWWGHRQRNQH 60
MDWSGYDLLLLIHVRKWCLAWDPVCQNHSRPGRHVQLGLGRTGLHDRAGEWWGHRQRNQH
Sbjct: 1 MDWSGYDLLLLIHVRKWCLAWDPVCQNHSRPGRHVQLGLGRTGLHDRAGEWWGHRQRNQH 60
Query: 61 CLPFDSKQLQKIPVSISTYWLFEHFLNDFLIQPEGKETIHYHLEAQLAVPSGWHIAPESC 120
CLPFDSKQLQKIPVSISTYWLFEHFLNDFLIQPEGKETIHYHLEAQLAVPSGWHIAPESC
Sbjct: 61 CLPFDSKQLQKIPVSISTYWLFEHFLNDFLIQPEGKETIHYHLEAQLAVPSGWHIAPESC 120
Query: 121 SSSGWPQIPEKRLRQSHFPDPQASWLLEGHCSFLLPPAVPASTSSPHPCTHRHTRGEESG 180
SSSGWPQIPEKRLRQSHFPDPQASWLLEGHCSFLLPPAVPASTSSPHPCTHRHTRGEESG
Sbjct: 121 SSSGWPQIPEKRLRQSHFPDPQASWLLEGHCSFLLPPAVPASTSSPHPCTHRHTRGEESG 180
Query: 181 TLRRPIPAMPHVALAIPRK 199
TLRRPIPAMPHVALAIPRK
Sbjct: 181 TLRRPIPAMPHVALAIPRK 199
>gi|239748112 PREDICTED: hypothetical protein [Homo sapiens]
Length = 199
Score = 439 bits (1130), Expect = e-124
Identities = 199/199 (100%), Positives = 199/199 (100%)
Query: 1 MDWSGYDLLLLIHVRKWCLAWDPVCQNHSRPGRHVQLGLGRTGLHDRAGEWWGHRQRNQH 60
MDWSGYDLLLLIHVRKWCLAWDPVCQNHSRPGRHVQLGLGRTGLHDRAGEWWGHRQRNQH
Sbjct: 1 MDWSGYDLLLLIHVRKWCLAWDPVCQNHSRPGRHVQLGLGRTGLHDRAGEWWGHRQRNQH 60
Query: 61 CLPFDSKQLQKIPVSISTYWLFEHFLNDFLIQPEGKETIHYHLEAQLAVPSGWHIAPESC 120
CLPFDSKQLQKIPVSISTYWLFEHFLNDFLIQPEGKETIHYHLEAQLAVPSGWHIAPESC
Sbjct: 61 CLPFDSKQLQKIPVSISTYWLFEHFLNDFLIQPEGKETIHYHLEAQLAVPSGWHIAPESC 120
Query: 121 SSSGWPQIPEKRLRQSHFPDPQASWLLEGHCSFLLPPAVPASTSSPHPCTHRHTRGEESG 180
SSSGWPQIPEKRLRQSHFPDPQASWLLEGHCSFLLPPAVPASTSSPHPCTHRHTRGEESG
Sbjct: 121 SSSGWPQIPEKRLRQSHFPDPQASWLLEGHCSFLLPPAVPASTSSPHPCTHRHTRGEESG 180
Query: 181 TLRRPIPAMPHVALAIPRK 199
TLRRPIPAMPHVALAIPRK
Sbjct: 181 TLRRPIPAMPHVALAIPRK 199
>gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo
sapiens]
Length = 439
Score = 30.8 bits (68), Expect = 0.79
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 149 GHCSFLLPPAVPASTSSPHPCTHRHTRGEE 178
GHC+ PPAVP SP H H RG E
Sbjct: 399 GHCTLHSPPAVP-RLPSPVRSAHSHVRGAE 427
>gi|116174742 family with sequence similarity 20, member C [Homo
sapiens]
Length = 584
Score = 30.8 bits (68), Expect = 0.79
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 116 APESCSSSGWPQIPEKRLRQSHFPDPQASWLLEGHCSFLLPPAVPASTSSPHPCTHRHTR 175
A + +GWP R+ Q DP ++ L H LPPA + R R
Sbjct: 73 ASSAAGDAGWPNKHTLRILQDFSSDPSSN--LSSHSLEKLPPAAEPA--------ERALR 122
Query: 176 GEESGTLRRPIPA 188
G + G LR PA
Sbjct: 123 GRDPGALRPHDPA 135
>gi|239757254 PREDICTED: hypothetical protein [Homo sapiens]
Length = 247
Score = 30.4 bits (67), Expect = 1.0
Identities = 33/106 (31%), Positives = 41/106 (38%), Gaps = 16/106 (15%)
Query: 95 GKETIHYHLEAQLAVPSG---WHIAPESCSSSGWPQI----PEKRLRQSHFPDPQASWLL 147
G+E + E L VPS W + P S S +P P+ SHFP +S +
Sbjct: 11 GEEAMPMRREVYLEVPSSRFSWKVLPGPRSGSCFPPSLLWGPD-----SHFPPANSSSQV 65
Query: 148 EGHCSFLLPPAVPASTSSPHPCTHRHTRGEESGTLRRPIPAMPHVA 193
L P PAS S +HRH R PA P VA
Sbjct: 66 APLPFLLSPAQPPASLLSLPYGSHRHPPSPRP----RDPPASPSVA 107
>gi|12751477 forkhead box L2 [Homo sapiens]
Length = 376
Score = 29.6 bits (65), Expect = 1.8
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 156 PPAVPASTSSPHPCTHRHTRGEESGTLRRPIPAMPHVALAIP 197
PPA P PHP H H + P PA PH A P
Sbjct: 280 PPAAPPPPPHPHPHPHAHHLHAAAA----PPPAPPHHGAAAP 317
>gi|239755473 PREDICTED: hypothetical protein [Homo sapiens]
Length = 387
Score = 28.9 bits (63), Expect = 3.0
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 23 PVCQNHSRPGRHVQLGLGRTGLHDRAGEWWGHRQRNQHCLPFD 65
P+ Q+ G+ +Q G R G+H GHR R Q LP D
Sbjct: 344 PLPQSLQHGGQLLQQGHHRHGVHGTPRRRLGHRPRLQRTLPHD 386
>gi|239749968 PREDICTED: hypothetical protein XP_002347245 [Homo
sapiens]
Length = 387
Score = 28.9 bits (63), Expect = 3.0
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 23 PVCQNHSRPGRHVQLGLGRTGLHDRAGEWWGHRQRNQHCLPFD 65
P+ Q+ G+ +Q G R G+H GHR R Q LP D
Sbjct: 344 PLPQSLQHGGQLLQQGHHRHGVHGTPRRRLGHRPRLQRTLPHD 386
>gi|4758316 ets variant gene 5 (ets-related molecule) [Homo sapiens]
Length = 510
Score = 28.9 bits (63), Expect = 3.0
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 138 FPDPQASWLLEGHCSFLLPPAVPASTSSPHPCTHRHTR-GEESGTLRRPIPAMPHVALAI 196
FP PQA+ GH P A P P P H G + T P P PH L +
Sbjct: 150 FPPPQATLPTSGHA----PAAGPVQGVGPAPAPHSLPEPGPQQQTFAVPRP--PHQPLQM 203
Query: 197 PR 198
P+
Sbjct: 204 PK 205
>gi|223278356 glutamate receptor, ionotropic, N-methyl-D-aspartate
3A [Homo sapiens]
Length = 1115
Score = 28.5 bits (62), Expect = 3.9
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
Query: 145 WLLEGHCSFLLPP------AVPASTSSPHPC 169
WLL C L PP VP+S+S P PC
Sbjct: 8 WLLSRVCLLLPPPCALVLAGVPSSSSHPQPC 38
>gi|239756172 PREDICTED: hypothetical protein [Homo sapiens]
Length = 122
Score = 28.5 bits (62), Expect = 3.9
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 130 EKRLRQSHFPDPQASWLLEGHCSFLL--PPAVPASTSSPHPCTHRHTRGEESGTLR 183
E R+ S FP P ++ LL GHC P A PA + P R +E TLR
Sbjct: 10 ELRVPNSLFPSPPSNPLLGGHCGRPTKGPAASPAKSGRSRPTI---LRVQEMKTLR 62
>gi|239754162 PREDICTED: hypothetical protein [Homo sapiens]
Length = 149
Score = 28.5 bits (62), Expect = 3.9
Identities = 32/111 (28%), Positives = 41/111 (36%), Gaps = 41/111 (36%)
Query: 103 LEAQLAVPSGWHIAPESCSSSG----WPQIPEKRLRQSHFPDPQA-----------SW-- 145
LE Q VPS A + +++ WP +P ++ H DPQ SW
Sbjct: 31 LEIQRRVPSARTAAAAAAAAAADSRRWPGLP----KEPHGADPQTDPSRRRRLRGPSWGG 86
Query: 146 --------LLEG---------HCSFLLPPAVPASTSSPHPC---THRHTRG 176
LL+G HCS P VP + SP P T R RG
Sbjct: 87 SRSHRVQVLLKGGAAASAISQHCSHPEPETVPTHSRSPPPLISGTRRAARG 137
>gi|239750674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 122
Score = 28.5 bits (62), Expect = 3.9
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 130 EKRLRQSHFPDPQASWLLEGHCSFLL--PPAVPASTSSPHPCTHRHTRGEESGTLR 183
E R+ S FP P ++ LL GHC P A PA + P R +E TLR
Sbjct: 10 ELRVPNSLFPSPPSNPLLGGHCGRPTKGPAASPAKSGRSRPTI---LRVQEMKTLR 62
>gi|239748672 PREDICTED: hypothetical protein XP_002346774 [Homo
sapiens]
Length = 149
Score = 28.5 bits (62), Expect = 3.9
Identities = 32/111 (28%), Positives = 41/111 (36%), Gaps = 41/111 (36%)
Query: 103 LEAQLAVPSGWHIAPESCSSSG----WPQIPEKRLRQSHFPDPQA-----------SW-- 145
LE Q VPS A + +++ WP +P ++ H DPQ SW
Sbjct: 31 LEIQRRVPSARTAAAAAAAAAADSRRWPGLP----KEPHGADPQTDPSRRRRLRGPSWGG 86
Query: 146 --------LLEG---------HCSFLLPPAVPASTSSPHPC---THRHTRG 176
LL+G HCS P VP + SP P T R RG
Sbjct: 87 SRSHRVQVLLKGGAAASAISQHCSHPEPETVPTHSRSPPPLISGTRRAARG 137
>gi|239744984 PREDICTED: hypothetical protein XP_002343349 [Homo
sapiens]
Length = 122
Score = 28.5 bits (62), Expect = 3.9
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 130 EKRLRQSHFPDPQASWLLEGHCSFLL--PPAVPASTSSPHPCTHRHTRGEESGTLR 183
E R+ S FP P ++ LL GHC P A PA + P R +E TLR
Sbjct: 10 ELRVPNSLFPSPPSNPLLGGHCGRPTKGPAASPAKSGRSRPTI---LRVQEMKTLR 62
>gi|239742697 PREDICTED: hypothetical protein XP_002342608 [Homo
sapiens]
Length = 149
Score = 28.5 bits (62), Expect = 3.9
Identities = 32/111 (28%), Positives = 41/111 (36%), Gaps = 41/111 (36%)
Query: 103 LEAQLAVPSGWHIAPESCSSSG----WPQIPEKRLRQSHFPDPQA-----------SW-- 145
LE Q VPS A + +++ WP +P ++ H DPQ SW
Sbjct: 31 LEIQRRVPSARTAAAAAAAAAADSRRWPGLP----KEPHGADPQTDPSRRRRLRGPSWGG 86
Query: 146 --------LLEG---------HCSFLLPPAVPASTSSPHPC---THRHTRG 176
LL+G HCS P VP + SP P T R RG
Sbjct: 87 SRSHRVQVLLKGGAAASAISQHCSHPEPETVPTHSRSPPPLISGTRRAARG 137
>gi|157738645 plexin A4 isoform 1 [Homo sapiens]
Length = 1894
Score = 28.1 bits (61), Expect = 5.1
Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 64 FDSKQLQKIPVSISTYWLFEHFLNDFLIQPEGKETIHYHLEAQLAVPSGWHIAPESCSSS 123
++ ++ +PV ++ W F I + +H + + G + + +
Sbjct: 769 YEGMEINNLPVELTVVWN-----GHFNIDNPAQNKVHLYKCGAMRESCGLCLKADPDFAC 823
Query: 124 GWPQIPEKRLRQSHFPDPQASWL 146
GW Q P + + H P ++ WL
Sbjct: 824 GWCQGPGQCTLRQHCPAQESQWL 846
>gi|222136583 inositol polyphosphate phosphatase-like 1 [Homo sapiens]
Length = 1258
Score = 28.1 bits (61), Expect = 5.1
Identities = 35/135 (25%), Positives = 48/135 (35%), Gaps = 43/135 (31%)
Query: 104 EAQLAVPSGWHIAPESCSSSGWPQIPEKRLRQSHFPDPQ--------------ASWLLEG 149
E + P+G AP + P P RL+ P+P+ A ++LEG
Sbjct: 934 EPEKPPPTGRPPAPPRAAPREEPLTP--RLKPEGAPEPEGVAAPPPKNSFNNPAYYVLEG 991
Query: 150 HCSFLLPPAVPASTSSPHPCT----------------HRHTR--------GEESGTLRR- 184
LLPP P+ +P P HRH R E GTL
Sbjct: 992 VPHQLLPPEPPSPARAPVPSATKNKVAITVPAPQLGHHRHPRVGEGSSSDEESGGTLPPP 1051
Query: 185 --PIPAMPHVALAIP 197
P P +P A+ +P
Sbjct: 1052 DFPPPPLPDSAIFLP 1066
>gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]
Length = 2217
Score = 28.1 bits (61), Expect = 5.1
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 135 QSHFPDPQASWLLEGHCSFLLPPAVPASTSSPHPCTHRHTRGEESGTLRRPIPAMPHVAL 194
Q HFPDP S+ L PP+ P T P G++ L +P P +P V
Sbjct: 696 QQHFPDPAMSF-----APVLPPPSTPMPTGPGQPA----PPGQQPPPLAQPTP-LPQVLA 745
Query: 195 AIP 197
P
Sbjct: 746 PQP 748
>gi|110346438 FERM and PDZ domain containing 2 isoform 1 [Homo
sapiens]
Length = 1287
Score = 28.1 bits (61), Expect = 5.1
Identities = 15/64 (23%), Positives = 23/64 (35%)
Query: 127 QIPEKRLRQSHFPDPQASWLLEGHCSFLLPPAVPASTSSPHPCTHRHTRGEESGTLRRPI 186
++ E+ P+P S L HCS L+ A+P + R + G
Sbjct: 211 RVSERSTETQSSPEPHWSTLTHSHCSLLVNRALPGADPQDQQAGRRLSSGSVHSAADSSW 270
Query: 187 PAMP 190
P P
Sbjct: 271 PTTP 274
>gi|110346436 FERM and PDZ domain containing 2 isoform 3 [Homo
sapiens]
Length = 1309
Score = 28.1 bits (61), Expect = 5.1
Identities = 15/64 (23%), Positives = 23/64 (35%)
Query: 127 QIPEKRLRQSHFPDPQASWLLEGHCSFLLPPAVPASTSSPHPCTHRHTRGEESGTLRRPI 186
++ E+ P+P S L HCS L+ A+P + R + G
Sbjct: 233 RVSERSTETQSSPEPHWSTLTHSHCSLLVNRALPGADPQDQQAGRRLSSGSVHSAADSSW 292
Query: 187 PAMP 190
P P
Sbjct: 293 PTTP 296
>gi|224028289 tetratricopeptide repeat domain 28 [Homo sapiens]
Length = 2481
Score = 27.7 bits (60), Expect = 6.7
Identities = 13/32 (40%), Positives = 13/32 (40%)
Query: 156 PPAVPASTSSPHPCTHRHTRGEESGTLRRPIP 187
PP P T P P R R ES PIP
Sbjct: 5 PPPAPEPTQGPTPARSRRRREPESPPASAPIP 36
>gi|145699139 cartilage intermediate layer protein 2 [Homo sapiens]
Length = 1156
Score = 27.7 bits (60), Expect = 6.7
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 13/56 (23%)
Query: 92 QPEGKETIHYH------LEAQLAVPSGWHIAPESCSSSGWPQIPEKRLRQSHFPDP 141
QP G+ +YH LEA W SC P +RLR+ H P P
Sbjct: 128 QPRGRRCSNYHVRFRCPLEASWGAWGPWGPCSGSCG-------PGRRLRRRHCPSP 176
>gi|6912734 transportin 3 [Homo sapiens]
Length = 923
Score = 27.3 bits (59), Expect = 8.8
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 91 IQPEGKETIHYHLEAQLAVPSGWHIAPESCSSSGWPQIPEKRLRQSHFPDPQASWLLEGH 150
+ PE T+ LE + +P H A S ++ E R F DP +L++G
Sbjct: 451 VDPENNPTLVEVLEGVVRLPETVHTAVRYTSIELVGEMSEVVDRNPQFLDPVLGYLMKGL 510
Query: 151 CSFLLPPAVPASTSSPH 167
C P A+ + H
Sbjct: 511 CE---KPLASAAAKAIH 524
>gi|239047498 slingshot 1 isoform 3 [Homo sapiens]
Length = 703
Score = 27.3 bits (59), Expect = 8.8
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 81 LFEHFLNDFLIQPEGKETIHYHLEAQLAVPSGWHIAPESCSSSGWP 126
L ++ LN + K + +E A P+GWH P S S WP
Sbjct: 619 LDQNLLNSENLNNNSKRSCPNGMEVGRARPAGWH-TPSLPSHSNWP 663
>gi|239047441 slingshot 1 isoform 2 [Homo sapiens]
Length = 692
Score = 27.3 bits (59), Expect = 8.8
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 81 LFEHFLNDFLIQPEGKETIHYHLEAQLAVPSGWHIAPESCSSSGWP 126
L ++ LN + K + +E A P+GWH P S S WP
Sbjct: 608 LDQNLLNSENLNNNSKRSCPNGMEVGRARPAGWH-TPSLPSHSNWP 652
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.483
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,991,638
Number of Sequences: 37866
Number of extensions: 533886
Number of successful extensions: 1650
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1639
Number of HSP's gapped (non-prelim): 29
length of query: 199
length of database: 18,247,518
effective HSP length: 97
effective length of query: 102
effective length of database: 14,574,516
effective search space: 1486600632
effective search space used: 1486600632
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.