Guide to the Human Genome
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Search of human proteins with 239753018

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239753018 PREDICTED: hypothetical protein [Homo sapiens]
         (70 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753018 PREDICTED: hypothetical protein [Homo sapiens]           150   3e-37
gi|239747526 PREDICTED: hypothetical protein XP_002347652 [Homo ...   150   3e-37
gi|239741402 PREDICTED: hypothetical protein XP_002342162 [Homo ...   150   3e-37
gi|157419126 laminin, alpha 4 isoform 2 precursor [Homo sapiens]       30   0.53 
gi|157419124 laminin, alpha 4 isoform 1 precursor [Homo sapiens]       30   0.53 
gi|157419122 laminin, alpha 4 isoform 2 precursor [Homo sapiens]       30   0.53 
gi|226051634 zinc finger protein 414 isoform 1 [Homo sapiens]          29   0.70 
gi|226051591 zinc finger protein 414 isoform 2 [Homo sapiens]          29   0.70 
gi|4506949 ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 i...    28   1.2  
gi|27765093 ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 ...    28   1.2  
gi|27765091 ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 ...    28   1.2  
gi|239755410 PREDICTED: hypothetical protein [Homo sapiens]            28   1.6  
gi|169201378 PREDICTED: hypothetical protein [Homo sapiens]            28   1.6  
gi|169188835 PREDICTED: hypothetical protein [Homo sapiens]            28   1.6  
gi|119120861 formin-like 3 isoform 2 [Homo sapiens]                    28   1.6  
gi|119120874 formin-like 3 isoform 1 [Homo sapiens]                    28   1.6  
gi|45580719 osteoclast-associated receptor isoform 1 [Homo sapiens]    27   4.5  
gi|9998946 amiloride-sensitive cation channel 3 isoform b [Homo ...    27   4.5  
gi|40807447 papillary renal cell carcinoma translocation-associa...    27   4.5  
gi|40807450 papillary renal cell carcinoma translocation-associa...    27   4.5  
gi|157168329 formin 1 [Homo sapiens]                                   26   5.9  
gi|149158690 HLA-B associated transcript-2 [Homo sapiens]              26   5.9  
gi|168229174 RNA binding motif protein 27 [Homo sapiens]               26   5.9  
gi|91176325 bromodomain adjacent to zinc finger domain, 2A [Homo...    26   7.7  
gi|154240732 hypothetical protein LOC201243 [Homo sapiens]             26   7.7  
gi|122937335 F-box protein 46 [Homo sapiens]                           26   7.7  

>gi|239753018 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 70

 Score =  150 bits (378), Expect = 3e-37
 Identities = 70/70 (100%), Positives = 70/70 (100%)

Query: 1  MPDRGALRRQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLIPIATVSSCLRHQLPSVVVV 60
          MPDRGALRRQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLIPIATVSSCLRHQLPSVVVV
Sbjct: 1  MPDRGALRRQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLIPIATVSSCLRHQLPSVVVV 60

Query: 61 KHSQPNHGIP 70
          KHSQPNHGIP
Sbjct: 61 KHSQPNHGIP 70


>gi|239747526 PREDICTED: hypothetical protein XP_002347652 [Homo
          sapiens]
          Length = 70

 Score =  150 bits (378), Expect = 3e-37
 Identities = 70/70 (100%), Positives = 70/70 (100%)

Query: 1  MPDRGALRRQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLIPIATVSSCLRHQLPSVVVV 60
          MPDRGALRRQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLIPIATVSSCLRHQLPSVVVV
Sbjct: 1  MPDRGALRRQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLIPIATVSSCLRHQLPSVVVV 60

Query: 61 KHSQPNHGIP 70
          KHSQPNHGIP
Sbjct: 61 KHSQPNHGIP 70


>gi|239741402 PREDICTED: hypothetical protein XP_002342162 [Homo
          sapiens]
          Length = 70

 Score =  150 bits (378), Expect = 3e-37
 Identities = 70/70 (100%), Positives = 70/70 (100%)

Query: 1  MPDRGALRRQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLIPIATVSSCLRHQLPSVVVV 60
          MPDRGALRRQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLIPIATVSSCLRHQLPSVVVV
Sbjct: 1  MPDRGALRRQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLIPIATVSSCLRHQLPSVVVV 60

Query: 61 KHSQPNHGIP 70
          KHSQPNHGIP
Sbjct: 61 KHSQPNHGIP 70


>gi|157419126 laminin, alpha 4 isoform 2 precursor [Homo sapiens]
          Length = 1816

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 7/43 (16%)

Query: 17   HRLAPENPDDLDPAPP-------PSMLVPRLIPIATVSSCLRH 52
            H + P NP  +D   P        S+L PRL P    + C+RH
Sbjct: 1746 HVVGPLNPKPIDHREPVFVGGVPESLLTPRLAPSKPFTGCIRH 1788


>gi|157419124 laminin, alpha 4 isoform 1 precursor [Homo sapiens]
          Length = 1823

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 7/43 (16%)

Query: 17   HRLAPENPDDLDPAPP-------PSMLVPRLIPIATVSSCLRH 52
            H + P NP  +D   P        S+L PRL P    + C+RH
Sbjct: 1753 HVVGPLNPKPIDHREPVFVGGVPESLLTPRLAPSKPFTGCIRH 1795


>gi|157419122 laminin, alpha 4 isoform 2 precursor [Homo sapiens]
          Length = 1816

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 7/43 (16%)

Query: 17   HRLAPENPDDLDPAPP-------PSMLVPRLIPIATVSSCLRH 52
            H + P NP  +D   P        S+L PRL P    + C+RH
Sbjct: 1746 HVVGPLNPKPIDHREPVFVGGVPESLLTPRLAPSKPFTGCIRH 1788


>gi|226051634 zinc finger protein 414 isoform 1 [Homo sapiens]
          Length = 390

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 7/44 (15%)

Query: 2   PDRGALRRQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLIPIAT 45
           P   AL R+ P       APE P ++DPA  P +  P L P  T
Sbjct: 208 PPPPALDREPP-------APERPPEVDPASAPGLPFPLLEPFTT 244


>gi|226051591 zinc finger protein 414 isoform 2 [Homo sapiens]
          Length = 312

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 7/44 (15%)

Query: 2   PDRGALRRQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLIPIAT 45
           P   AL R+ P       APE P ++DPA  P +  P L P  T
Sbjct: 208 PPPPALDREPP-------APERPPEVDPASAPGLPFPLLEPFTT 244


>gi|4506949 ST6 beta-galactosamide alpha-2,6-sialyltranferase 1
           isoform a [Homo sapiens]
          Length = 406

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 7   LRRQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLI 41
           L+ Q+P  LW  L   +P+++ P PP S ++  +I
Sbjct: 296 LKPQMPWELWDILQEISPEEIQPNPPSSGMLGIII 330


>gi|27765093 ST6 beta-galactosamide alpha-2,6-sialyltranferase 1
          isoform b [Homo sapiens]
          Length = 175

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 7  LRRQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLI 41
          L+ Q+P  LW  L   +P+++ P PP S ++  +I
Sbjct: 65 LKPQMPWELWDILQEISPEEIQPNPPSSGMLGIII 99


>gi|27765091 ST6 beta-galactosamide alpha-2,6-sialyltranferase 1
           isoform a [Homo sapiens]
          Length = 406

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 7   LRRQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLI 41
           L+ Q+P  LW  L   +P+++ P PP S ++  +I
Sbjct: 296 LKPQMPWELWDILQEISPEEIQPNPPSSGMLGIII 330


>gi|239755410 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 183

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query: 9   RQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLIPIATVSS 48
           R LP  +W RL P     L   PPP+   P    +  +SS
Sbjct: 111 RLLPPPVWRRLTPHLRQPLPTPPPPAPPRPDFAKVRVLSS 150


>gi|169201378 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 183

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query: 9   RQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLIPIATVSS 48
           R LP  +W RL P     L   PPP+   P    +  +SS
Sbjct: 111 RLLPPPVWRRLTPHLRQPLPTPPPPAPPRPDFAKVRVLSS 150


>gi|169188835 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 183

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query: 9   RQLPMVLWHRLAPENPDDLDPAPPPSMLVPRLIPIATVSS 48
           R LP  +W RL P     L   PPP+   P    +  +SS
Sbjct: 111 RLLPPPVWRRLTPHLRQPLPTPPPPAPPRPDFAKVRVLSS 150


>gi|119120861 formin-like 3 isoform 2 [Homo sapiens]
          Length = 976

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 15/36 (41%), Positives = 19/36 (52%)

Query: 3   DRGALRRQLPMVLWHRLAPENPDDLDPAPPPSMLVP 38
           D  AL R  P  L   + P + D L PAPPP  ++P
Sbjct: 431 DSEALARVGPAELSEGMPPSDLDLLAPAPPPEEVLP 466


>gi|119120874 formin-like 3 isoform 1 [Homo sapiens]
          Length = 1027

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 15/36 (41%), Positives = 19/36 (52%)

Query: 3   DRGALRRQLPMVLWHRLAPENPDDLDPAPPPSMLVP 38
           D  AL R  P  L   + P + D L PAPPP  ++P
Sbjct: 482 DSEALARVGPAELSEGMPPSDLDLLAPAPPPEEVLP 517


>gi|45580719 osteoclast-associated receptor isoform 1 [Homo sapiens]
          Length = 286

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 10/16 (62%), Positives = 11/16 (68%)

Query: 19  LAPENPDDLDPAPPPS 34
           L P+  D  DPAPPPS
Sbjct: 267 LLPQTQDSWDPAPPPS 282


>gi|9998946 amiloride-sensitive cation channel 3 isoform b [Homo
           sapiens]
          Length = 549

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 9/64 (14%)

Query: 5   GALRRQLPMVLWHRLAPEN---PDDLDPAPPPSMLVPRLIPIATVSSCLRHQLPSVVVVK 61
           G+ R Q+P +    L P      +DL P P PS   PRL P  T  + L H     V V 
Sbjct: 492 GSHRTQVPHL---SLGPSTLLCSEDLPPLPVPS---PRLSPPPTAPATLSHSSRPAVCVL 545

Query: 62  HSQP 65
            + P
Sbjct: 546 GAPP 549


>gi|40807447 papillary renal cell carcinoma
          translocation-associated gene product isoform 1 [Homo
          sapiens]
          Length = 491

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 15/37 (40%), Positives = 17/37 (45%)

Query: 2  PDRGALRRQLPMVLWHRLAPENPDDLDPAPPPSMLVP 38
          P  G L   LP      L P  P  L PA PP +L+P
Sbjct: 33 PALGGLFASLPAPKGPALLPPPPQMLAPAFPPPLLLP 69


>gi|40807450 papillary renal cell carcinoma
          translocation-associated gene product isoform 2 [Homo
          sapiens]
          Length = 459

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 15/37 (40%), Positives = 17/37 (45%)

Query: 2  PDRGALRRQLPMVLWHRLAPENPDDLDPAPPPSMLVP 38
          P  G L   LP      L P  P  L PA PP +L+P
Sbjct: 33 PALGGLFASLPAPKGPALLPPPPQMLAPAFPPPLLLP 69


>gi|157168329 formin 1 [Homo sapiens]
          Length = 1196

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 11/19 (57%), Positives = 11/19 (57%)

Query: 20  APENPDDLDPAPPPSMLVP 38
           AP NP    PAPPP  L P
Sbjct: 712 APPNPGGPPPAPPPPGLAP 730


>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
          Length = 2157

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 4/29 (13%)

Query: 10   QLPMVLWHRLAPENPDDLDPAPPPSMLVP 38
            QLP+V +  L P  P    PAPPP  L+P
Sbjct: 1987 QLPVVNFGSLPPAPP----PAPPPLSLLP 2011


>gi|168229174 RNA binding motif protein 27 [Homo sapiens]
          Length = 1060

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)

Query: 21  PENPDDLDPAPPPSMLVP 38
           P  P  L P PPP ML+P
Sbjct: 317 PPPPPGLPPPPPPGMLMP 334


>gi|91176325 bromodomain adjacent to zinc finger domain, 2A [Homo
            sapiens]
          Length = 1905

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 12   PMVLWHRLAPENPDDLDPAPPPSM 35
            P  LW  ++ + P +  P PPP++
Sbjct: 1319 PQALWFNISAQMPCNAAPTPPPAV 1342


>gi|154240732 hypothetical protein LOC201243 [Homo sapiens]
          Length = 501

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 9/11 (81%), Positives = 10/11 (90%)

Query: 28  DPAPPPSMLVP 38
           DPAPPP+M VP
Sbjct: 437 DPAPPPTMFVP 447


>gi|122937335 F-box protein 46 [Homo sapiens]
          Length = 603

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query: 20  APENPDDLDPAPPP 33
           AP  P+D  PAPPP
Sbjct: 340 APARPEDTPPAPPP 353


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.139    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,684,283
Number of Sequences: 37866
Number of extensions: 163252
Number of successful extensions: 789
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 764
Number of HSP's gapped (non-prelim): 28
length of query: 70
length of database: 18,247,518
effective HSP length: 43
effective length of query: 27
effective length of database: 16,619,280
effective search space: 448720560
effective search space used: 448720560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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