Guide to the Human Genome
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Name: LOC100290662 Sequence: fasta or formatted (70aa) NCBI GI: 239747526
Description:

PREDICTED: hypothetical protein XP_002347652

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7          4           1
 C cysteine            1.4          1           1
 D aspartate           5.7          4           2
 E glutamate           1.4          1           1
 F phenylalanine       0.0          0           0
 G glycine             2.9          2           1
 H histidine           5.7          4           1
 I isoleucine          4.3          3           1
 K lysine              1.4          1           1
 L leucine            12.9          9           1
 M methionine          4.3          3           1
 N asparagine          2.9          2           1
 P proline            18.6         13           3
 Q glutamine           4.3          3           1
 R arginine            8.6          6           2
 S serine              7.1          5           2
 T threonine           1.4          1           1
 V valine             10.0          7           4
 W tryptophan          1.4          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347652 
LOC100293757          1.000   PREDICTED: hypothetical protein 
LOC100287850          1.000   PREDICTED: hypothetical protein XP_002342162 
LAMA4                 0.040   laminin, alpha 4 isoform 2 precursor 
LAMA4                 0.040   laminin, alpha 4 isoform 1 precursor 
LAMA4                 0.040   laminin, alpha 4 isoform 2 precursor 
ZNF414                0.032   zinc finger protein 414 isoform 1 
ZNF414                0.032   zinc finger protein 414 isoform 2 
ST6GAL1               0.024   ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 i...
ST6GAL1               0.024   ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 ...
ST6GAL1               0.024   ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 ...
LOC100128304          0.024   PREDICTED: hypothetical protein 
LOC100128304          0.024   PREDICTED: hypothetical protein 
LOC100128304          0.024   PREDICTED: hypothetical protein 
FMNL3                 0.024   formin-like 3 isoform 2 
FMNL3                 0.024   formin-like 3 isoform 1 
OSCAR                 0.016   osteoclast-associated receptor isoform 1 
ACCN3                 0.016   amiloride-sensitive cation channel 3 isoform b 
PRCC                  0.016   papillary renal cell carcinoma translocation-associa...
PRCC                  0.016   papillary renal cell carcinoma translocation-associa...
FMN1                  0.008   formin 1 
BAT2                  0.008   HLA-B associated transcript-2 
RBM27                 0.008   RNA binding motif protein 27 
BAZ2A                 0.008   bromodomain adjacent to zinc finger domain, 2A [Homo...
C17orf74              0.008   hypothetical protein LOC201243 
FBXO46                0.008   F-box protein 46 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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