Guide to the Human Genome
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Search of human proteins with 239752914

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239752914 PREDICTED: similar to hCG1793647 [Homo sapiens]
         (57 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239752914 PREDICTED: similar to hCG1793647 [Homo sapiens]          124   2e-29
gi|239747461 PREDICTED: hypothetical protein XP_002347531 [Homo ...   124   2e-29
gi|148229144 small proline-rich protein 3 [Homo sapiens]               62   8e-11
gi|4885607 small proline-rich protein 3 [Homo sapiens]                 62   8e-11
gi|45827734 small proline-rich protein 1A [Homo sapiens]               55   9e-09
gi|83582815 small proline-rich protein 1B [Homo sapiens]               53   6e-08
gi|221316699 maltase-glucoamylase [Homo sapiens]                       32   0.11 
gi|189181724 proteoglycan 4 isoform D [Homo sapiens]                   28   1.2  
gi|189181722 proteoglycan 4 isoform C [Homo sapiens]                   28   1.2  
gi|189181720 proteoglycan 4 isoform B [Homo sapiens]                   28   1.2  
gi|67190163 proteoglycan 4 isoform A [Homo sapiens]                    28   1.2  
gi|239745855 PREDICTED: hypothetical protein XP_002343606 [Homo ...    28   1.6  
gi|239755810 PREDICTED: hypothetical protein [Homo sapiens]            27   2.7  
gi|239750310 PREDICTED: hypothetical protein [Homo sapiens]            27   2.7  
gi|239744621 PREDICTED: hypothetical protein [Homo sapiens]            27   2.7  
gi|10198656 anti-Mullerian hormone receptor, type II [Homo sapiens]    27   2.7  
gi|132626688 mediator of DNA-damage checkpoint 1 [Homo sapiens]        26   6.1  
gi|109633022 mucosal vascular addressin cell adhesion molecule 1...    26   6.1  
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]       26   7.9  
gi|75677612 leucine rich repeat containing 37, member A3 [Homo s...    26   7.9  

>gi|239752914 PREDICTED: similar to hCG1793647 [Homo sapiens]
          Length = 57

 Score =  124 bits (310), Expect = 2e-29
 Identities = 57/57 (100%), Positives = 57/57 (100%)

Query: 1  MLPKTWNLEPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQKSK 57
          MLPKTWNLEPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQKSK
Sbjct: 1  MLPKTWNLEPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQKSK 57


>gi|239747461 PREDICTED: hypothetical protein XP_002347531 [Homo
          sapiens]
          Length = 57

 Score =  124 bits (310), Expect = 2e-29
 Identities = 57/57 (100%), Positives = 57/57 (100%)

Query: 1  MLPKTWNLEPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQKSK 57
          MLPKTWNLEPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQKSK
Sbjct: 1  MLPKTWNLEPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQKSK 57


>gi|148229144 small proline-rich protein 3 [Homo sapiens]
          Length = 169

 Score = 62.4 bits (150), Expect = 8e-11
 Identities = 38/89 (42%), Positives = 41/89 (46%), Gaps = 40/89 (44%)

Query: 9   EPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPH------------------------- 43
           EPG TK+PE GCTK+PEPGCTKV E   TKVPEP                          
Sbjct: 79  EPGCTKVPEPGCTKVPEPGCTKVPEPGYTKVPEPGSIKVPDQGFIKFPEPGAIKVPEQGY 138

Query: 44  ---------------PSTVTSGPAQQKSK 57
                          PSTVT GPAQQK+K
Sbjct: 139 TKVPVPGYTKLPEPCPSTVTPGPAQQKTK 167



 Score = 62.0 bits (149), Expect = 1e-10
 Identities = 27/34 (79%), Positives = 29/34 (85%)

Query: 9  EPGNTKIPELGCTKIPEPGCTKVLESISTKVPEP 42
          +PGNTKIPE GCTK+PEPGCTKV E   TKVPEP
Sbjct: 47 QPGNTKIPEPGCTKVPEPGCTKVPEPGCTKVPEP 80



 Score = 59.3 bits (142), Expect = 6e-10
 Identities = 26/34 (76%), Positives = 28/34 (82%)

Query: 9  EPGNTKIPELGCTKIPEPGCTKVLESISTKVPEP 42
          EPG TK+PE GCTK+PEPGCTKV E   TKVPEP
Sbjct: 55 EPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEP 88



 Score = 59.3 bits (142), Expect = 6e-10
 Identities = 26/34 (76%), Positives = 28/34 (82%)

Query: 9  EPGNTKIPELGCTKIPEPGCTKVLESISTKVPEP 42
          EPG TK+PE GCTK+PEPGCTKV E   TKVPEP
Sbjct: 63 EPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEP 96



 Score = 50.4 bits (119), Expect = 3e-07
 Identities = 23/34 (67%), Positives = 27/34 (79%)

Query: 9  EPGNTKIPELGCTKIPEPGCTKVLESISTKVPEP 42
          EP ++K+P+ G TKIPEPGCTKV E   TKVPEP
Sbjct: 39 EPCHSKVPQPGNTKIPEPGCTKVPEPGCTKVPEP 72


>gi|4885607 small proline-rich protein 3 [Homo sapiens]
          Length = 169

 Score = 62.4 bits (150), Expect = 8e-11
 Identities = 38/89 (42%), Positives = 41/89 (46%), Gaps = 40/89 (44%)

Query: 9   EPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPH------------------------- 43
           EPG TK+PE GCTK+PEPGCTKV E   TKVPEP                          
Sbjct: 79  EPGCTKVPEPGCTKVPEPGCTKVPEPGYTKVPEPGSIKVPDQGFIKFPEPGAIKVPEQGY 138

Query: 44  ---------------PSTVTSGPAQQKSK 57
                          PSTVT GPAQQK+K
Sbjct: 139 TKVPVPGYTKLPEPCPSTVTPGPAQQKTK 167



 Score = 62.0 bits (149), Expect = 1e-10
 Identities = 27/34 (79%), Positives = 29/34 (85%)

Query: 9  EPGNTKIPELGCTKIPEPGCTKVLESISTKVPEP 42
          +PGNTKIPE GCTK+PEPGCTKV E   TKVPEP
Sbjct: 47 QPGNTKIPEPGCTKVPEPGCTKVPEPGCTKVPEP 80



 Score = 59.3 bits (142), Expect = 6e-10
 Identities = 26/34 (76%), Positives = 28/34 (82%)

Query: 9  EPGNTKIPELGCTKIPEPGCTKVLESISTKVPEP 42
          EPG TK+PE GCTK+PEPGCTKV E   TKVPEP
Sbjct: 55 EPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEP 88



 Score = 59.3 bits (142), Expect = 6e-10
 Identities = 26/34 (76%), Positives = 28/34 (82%)

Query: 9  EPGNTKIPELGCTKIPEPGCTKVLESISTKVPEP 42
          EPG TK+PE GCTK+PEPGCTKV E   TKVPEP
Sbjct: 63 EPGCTKVPEPGCTKVPEPGCTKVPEPGCTKVPEP 96



 Score = 50.4 bits (119), Expect = 3e-07
 Identities = 23/34 (67%), Positives = 27/34 (79%)

Query: 9  EPGNTKIPELGCTKIPEPGCTKVLESISTKVPEP 42
          EP ++K+P+ G TKIPEPGCTKV E   TKVPEP
Sbjct: 39 EPCHSKVPQPGNTKIPEPGCTKVPEPGCTKVPEP 72


>gi|45827734 small proline-rich protein 1A [Homo sapiens]
          Length = 89

 Score = 55.5 bits (132), Expect = 9e-09
 Identities = 31/56 (55%), Positives = 36/56 (64%), Gaps = 2/56 (3%)

Query: 2  LPKTWNLEPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQKSK 57
          +PKT   EP + K+PE    K+PEP   KV E    KVPEP PSTVT  PAQQK+K
Sbjct: 34 IPKT--KEPCHPKVPEPCHPKVPEPCQPKVPEPCQPKVPEPCPSTVTPAPAQQKTK 87


>gi|83582815 small proline-rich protein 1B [Homo sapiens]
          Length = 89

 Score = 52.8 bits (125), Expect = 6e-08
 Identities = 30/56 (53%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 2  LPKTWNLEPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQKSK 57
          +PKT   EP + K+PE    K+PEP   KV E    KVPEP PS VT  PAQQK+K
Sbjct: 34 IPKT--KEPCHPKVPEPCHPKVPEPCQPKVPEPCHPKVPEPCPSIVTPAPAQQKTK 87


>gi|221316699 maltase-glucoamylase [Homo sapiens]
          Length = 1857

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 15/45 (33%), Positives = 23/45 (51%)

Query: 9  EPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQ 53
          +PG T  P+ G T  P+PG T    + +T  P+P  +  T   A+
Sbjct: 45 DPGTTGTPDPGTTGTPDPGTTGTTHARTTGPPDPGTTGTTPVSAE 89


>gi|189181724 proteoglycan 4 isoform D [Homo sapiens]
          Length = 1270

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 13  TKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQK 55
           TK P L   K P P   K  E  ST   EP P+T+ S P   K
Sbjct: 205 TKGPALTTPKEPTPTTPK--EPASTTPKEPTPTTIKSAPTTPK 245



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 3   PKTWNLEPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQK 55
           P T    P   K P    TK P P   K  E   T   EP P+T  S P   K
Sbjct: 249 PTTTKSAPTTPKEPAPTTTKEPAPTTPK--EPAPTTTKEPAPTTTKSAPTTPK 299



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 10  PGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQK 55
           P  TK P     K P P  TK   S  T   EP P+T  S P   K
Sbjct: 374 PTTTKEPSPTTPKEPAPTTTK---SAPTTTKEPAPTTTKSAPTTPK 416


>gi|189181722 proteoglycan 4 isoform C [Homo sapiens]
          Length = 1311

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 13  TKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQK 55
           TK P L   K P P   K  E  ST   EP P+T+ S P   K
Sbjct: 246 TKGPALTTPKEPTPTTPK--EPASTTPKEPTPTTIKSAPTTPK 286



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 3   PKTWNLEPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQK 55
           P T    P   K P    TK P P   K  E   T   EP P+T  S P   K
Sbjct: 290 PTTTKSAPTTPKEPAPTTTKEPAPTTPK--EPAPTTTKEPAPTTTKSAPTTPK 340



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 10  PGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQK 55
           P  TK P     K P P  TK   S  T   EP P+T  S P   K
Sbjct: 415 PTTTKEPSPTTPKEPAPTTTK---SAPTTTKEPAPTTTKSAPTTPK 457


>gi|189181720 proteoglycan 4 isoform B [Homo sapiens]
          Length = 1363

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 13  TKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQK 55
           TK P L   K P P   K  E  ST   EP P+T+ S P   K
Sbjct: 298 TKGPALTTPKEPTPTTPK--EPASTTPKEPTPTTIKSAPTTPK 338



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 3   PKTWNLEPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQK 55
           P T    P   K P    TK P P   K  E   T   EP P+T  S P   K
Sbjct: 342 PTTTKSAPTTPKEPAPTTTKEPAPTTPK--EPAPTTTKEPAPTTTKSAPTTPK 392



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 10  PGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQK 55
           P  TK P     K P P  TK   S  T   EP P+T  S P   K
Sbjct: 467 PTTTKEPSPTTPKEPAPTTTK---SAPTTTKEPAPTTTKSAPTTPK 509


>gi|67190163 proteoglycan 4 isoform A [Homo sapiens]
          Length = 1404

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 13  TKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQK 55
           TK P L   K P P   K  E  ST   EP P+T+ S P   K
Sbjct: 339 TKGPALTTPKEPTPTTPK--EPASTTPKEPTPTTIKSAPTTPK 379



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 3   PKTWNLEPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQK 55
           P T    P   K P    TK P P   K  E   T   EP P+T  S P   K
Sbjct: 383 PTTTKSAPTTPKEPAPTTTKEPAPTTPK--EPAPTTTKEPAPTTTKSAPTTPK 433



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 10  PGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQK 55
           P  TK P     K P P  TK   S  T   EP P+T  S P   K
Sbjct: 508 PTTTKEPSPTTPKEPAPTTTK---SAPTTTKEPAPTTTKSAPTTPK 550


>gi|239745855 PREDICTED: hypothetical protein XP_002343606 [Homo
           sapiens]
          Length = 870

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)

Query: 9   EPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTS 49
           E  +T+ P+LG   IPEP       +   K   PHP  V S
Sbjct: 742 EETSTQPPDLGLAIIPEPTTETGHSTALEKTTAPHPDRVQS 782


>gi|239755810 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 499

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 8/56 (14%)

Query: 3   PKTWNLEPGNTKIPELGCTKIPEP--------GCTKVLESISTKVPEPHPSTVTSG 50
           P+T    P  ++ P  GC+   +P        GC      +S  +P P P  VT G
Sbjct: 354 PQTLAPHPQASRRPRAGCSLSLQPPHQRGLRDGCPSAAGRLSPALPAPSPREVTLG 409


>gi|239750310 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 499

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 8/56 (14%)

Query: 3   PKTWNLEPGNTKIPELGCTKIPEP--------GCTKVLESISTKVPEPHPSTVTSG 50
           P+T    P  ++ P  GC+   +P        GC      +S  +P P P  VT G
Sbjct: 354 PQTLAPHPQASRRPRAGCSLSLQPPHQRGLRDGCPSAAGRLSPALPAPSPREVTLG 409


>gi|239744621 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 536

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 8/56 (14%)

Query: 3   PKTWNLEPGNTKIPELGCTKIPEP--------GCTKVLESISTKVPEPHPSTVTSG 50
           P+T    P  ++ P  GC+   +P        GC      +S  +P P P  VT G
Sbjct: 391 PQTLAPHPQASRRPRAGCSLSLQPPHQRGLRDGCPSAAGRLSPALPAPSPREVTLG 446


>gi|10198656 anti-Mullerian hormone receptor, type II [Homo sapiens]
          Length = 573

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 6   WNLEPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPS 45
           WNL     ++   GC    EPGC  +    S   P  HPS
Sbjct: 65  WNLTQDRAQVEMQGCRDSDEPGCESLHCDPS---PRAHPS 101


>gi|132626688 mediator of DNA-damage checkpoint 1 [Homo sapiens]
          Length = 2089

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 36   STKVPEPHPSTVTSGPAQQK 55
            ++  PEPHPST T+ P   K
Sbjct: 1121 TSAAPEPHPSTSTAQPVTPK 1140



 Score = 26.2 bits (56), Expect = 6.1
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 30   KVLESISTKVPEPHPSTVTSGPAQQK 55
            K  E +    PEPHP+T T  P   K
Sbjct: 1607 KTPEPVVPTAPEPHPTTSTDQPVTPK 1632


>gi|109633022 mucosal vascular addressin cell adhesion molecule 1
           isoform a precursor [Homo sapiens]
          Length = 382

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 9   EPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTVTSGPAQQK 55
           EP +T  PE   T  PE   T   E   T  PEP P   +  PA Q+
Sbjct: 231 EPPDTTSPESPDTTSPESPDTTSQEPPDTTSPEP-PDKTSPEPAPQQ 276


>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
          Length = 2240

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 23   IPEPGCTKVLESISTKVPEPHPSTVTSGPA 52
            +PEP   KVL S+    P P  +  T+  A
Sbjct: 1267 LPEPPVLKVLSSLKPAAPSPATAATTAAAA 1296


>gi|75677612 leucine rich repeat containing 37, member A3 [Homo
           sapiens]
          Length = 1634

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 9   EPGNTKIPELGCTKIPEPGCTKVLESISTKVPEPHPSTV 47
           E  +T++P+LG   IPEP       +   K   P P  V
Sbjct: 742 EETSTQLPDLGLAIIPEPTTETGHSTALEKTTAPRPDRV 780


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.306    0.128    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,173,874
Number of Sequences: 37866
Number of extensions: 140483
Number of successful extensions: 337
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 250
Number of HSP's gapped (non-prelim): 65
length of query: 57
length of database: 18,247,518
effective HSP length: 30
effective length of query: 27
effective length of database: 17,111,538
effective search space: 462011526
effective search space used: 462011526
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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