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Search of human proteins with 239752891
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752891 PREDICTED: hypothetical protein [Homo sapiens]
(75 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752891 PREDICTED: hypothetical protein [Homo sapiens] 160 3e-40
gi|169161055 PREDICTED: hypothetical protein [Homo sapiens] 160 3e-40
gi|169215257 PREDICTED: hypothetical protein [Homo sapiens] 158 8e-40
gi|239741273 PREDICTED: hypothetical protein XP_002342153 [Homo ... 158 8e-40
gi|169161052 PREDICTED: hypothetical protein [Homo sapiens] 155 5e-39
gi|169161059 PREDICTED: hypothetical protein [Homo sapiens] 151 1e-37
gi|239758099 PREDICTED: hypothetical protein XP_002346294 [Homo ... 146 3e-36
gi|169178848 PREDICTED: hypothetical protein [Homo sapiens] 146 3e-36
gi|169174738 PREDICTED: hypothetical protein [Homo sapiens] 126 3e-30
gi|239743760 PREDICTED: hypothetical protein XP_002342953 [Homo ... 126 3e-30
gi|239747784 PREDICTED: hypothetical protein [Homo sapiens] 122 6e-29
gi|169163288 PREDICTED: hypothetical protein [Homo sapiens] 122 6e-29
gi|239749576 PREDICTED: hypothetical protein XP_002347089 [Homo ... 114 2e-26
gi|18201900 T-box 6 [Homo sapiens] 28 1.6
gi|20127408 mitochondrial trifunctional protein, alpha subunit p... 27 2.7
gi|188595677 integrin, beta 2 precursor [Homo sapiens] 27 3.6
gi|89191865 integrin, beta 2 precursor [Homo sapiens] 27 3.6
gi|19743886 regulatory factor X4 isoform a [Homo sapiens] 26 6.1
gi|239748997 PREDICTED: hypothetical protein XP_002346878 [Homo ... 26 6.1
gi|239743019 PREDICTED: hypothetical protein XP_002342720 [Homo ... 26 6.1
gi|15011898 regulatory factor X4 isoform b [Homo sapiens] 26 6.1
gi|47132527 regulatory factor X4 isoform c [Homo sapiens] 26 6.1
gi|167614488 TBC1 domain family, member 10B [Homo sapiens] 26 6.1
gi|15812180 butyrate response factor 1 [Homo sapiens] 26 7.9
gi|68989263 enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A... 26 7.9
gi|16306500 F-box only protein 21 isoform 2 [Homo sapiens] 26 7.9
gi|16306502 F-box only protein 21 isoform 1 [Homo sapiens] 26 7.9
>gi|239752891 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 160 bits (404), Expect = 3e-40
Identities = 75/75 (100%), Positives = 75/75 (100%)
Query: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
Query: 61 PCRWRQGASTDNPPA 75
PCRWRQGASTDNPPA
Sbjct: 61 PCRWRQGASTDNPPA 75
>gi|169161055 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 160 bits (404), Expect = 3e-40
Identities = 75/75 (100%), Positives = 75/75 (100%)
Query: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
Query: 61 PCRWRQGASTDNPPA 75
PCRWRQGASTDNPPA
Sbjct: 61 PCRWRQGASTDNPPA 75
>gi|169215257 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 158 bits (400), Expect = 8e-40
Identities = 74/75 (98%), Positives = 74/75 (98%)
Query: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
Query: 61 PCRWRQGASTDNPPA 75
PCRWRQG STDNPPA
Sbjct: 61 PCRWRQGGSTDNPPA 75
>gi|239741273 PREDICTED: hypothetical protein XP_002342153 [Homo
sapiens]
Length = 75
Score = 158 bits (400), Expect = 8e-40
Identities = 74/75 (98%), Positives = 74/75 (98%)
Query: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
Query: 61 PCRWRQGASTDNPPA 75
PCRWRQG STDNPPA
Sbjct: 61 PCRWRQGGSTDNPPA 75
>gi|169161052 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 155 bits (393), Expect = 5e-39
Identities = 72/75 (96%), Positives = 74/75 (98%)
Query: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGM+TEEGHCIMLRGLAPSLGGTQVICKV+GLPSSIGFNTSSHLLFPATLQGAPTHF
Sbjct: 1 MVVLGMRTEEGHCIMLRGLAPSLGGTQVICKVLGLPSSIGFNTSSHLLFPATLQGAPTHF 60
Query: 61 PCRWRQGASTDNPPA 75
PCRWRQG STDNPPA
Sbjct: 61 PCRWRQGGSTDNPPA 75
>gi|169161059 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 151 bits (381), Expect = 1e-37
Identities = 72/75 (96%), Positives = 72/75 (96%)
Query: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGMQTEEGHCIMLRGLA SLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAHSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
Query: 61 PCRWRQGASTDNPPA 75
PCRWRQG STDN PA
Sbjct: 61 PCRWRQGGSTDNLPA 75
>gi|239758099 PREDICTED: hypothetical protein XP_002346294 [Homo
sapiens]
Length = 75
Score = 146 bits (369), Expect = 3e-36
Identities = 70/75 (93%), Positives = 70/75 (93%)
Query: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQ A TH
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQVALTHL 60
Query: 61 PCRWRQGASTDNPPA 75
PCRWRQG STD PPA
Sbjct: 61 PCRWRQGGSTDKPPA 75
>gi|169178848 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 146 bits (369), Expect = 3e-36
Identities = 70/75 (93%), Positives = 70/75 (93%)
Query: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQ A TH
Sbjct: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQVALTHL 60
Query: 61 PCRWRQGASTDNPPA 75
PCRWRQG STD PPA
Sbjct: 61 PCRWRQGGSTDKPPA 75
>gi|169174738 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 126 bits (317), Expect = 3e-30
Identities = 61/75 (81%), Positives = 62/75 (82%)
Query: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGMQ EEGH RGLAP LG TQV+CKVVGLPS GFNTSSHLLFPATLQGA TH
Sbjct: 1 MVVLGMQREEGHQAQQRGLAPPLGRTQVMCKVVGLPSGAGFNTSSHLLFPATLQGALTHL 60
Query: 61 PCRWRQGASTDNPPA 75
PCRWRQG STD PPA
Sbjct: 61 PCRWRQGDSTDKPPA 75
>gi|239743760 PREDICTED: hypothetical protein XP_002342953 [Homo
sapiens]
Length = 75
Score = 126 bits (317), Expect = 3e-30
Identities = 61/75 (81%), Positives = 62/75 (82%)
Query: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGMQ EEGH RGLAP LG TQV+CKVVGLPS GFNTSSHLLFPATLQGA TH
Sbjct: 1 MVVLGMQREEGHQAQQRGLAPPLGRTQVMCKVVGLPSGAGFNTSSHLLFPATLQGALTHL 60
Query: 61 PCRWRQGASTDNPPA 75
PCRWRQG STD PPA
Sbjct: 61 PCRWRQGDSTDKPPA 75
>gi|239747784 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 122 bits (306), Expect = 6e-29
Identities = 60/75 (80%), Positives = 62/75 (82%)
Query: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGMQTEEGH RGLAP LG TQV+CKVVG PSS GF+TSSHLLFPATLQGA TH
Sbjct: 1 MVVLGMQTEEGHQAQQRGLAPPLGETQVMCKVVGRPSSAGFDTSSHLLFPATLQGALTHL 60
Query: 61 PCRWRQGASTDNPPA 75
CRWRQG STD PPA
Sbjct: 61 LCRWRQGDSTDKPPA 75
>gi|169163288 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 122 bits (306), Expect = 6e-29
Identities = 60/75 (80%), Positives = 62/75 (82%)
Query: 1 MVVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHF 60
MVVLGMQTEEGH RGLAP LG TQV+CKVVG PSS GF+TSSHLLFPATLQGA TH
Sbjct: 1 MVVLGMQTEEGHQAQQRGLAPPLGETQVMCKVVGRPSSAGFDTSSHLLFPATLQGALTHL 60
Query: 61 PCRWRQGASTDNPPA 75
CRWRQG STD PPA
Sbjct: 61 LCRWRQGDSTDKPPA 75
>gi|239749576 PREDICTED: hypothetical protein XP_002347089 [Homo
sapiens]
Length = 375
Score = 114 bits (284), Expect = 2e-26
Identities = 57/74 (77%), Positives = 59/74 (79%)
Query: 2 VVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHFP 61
VVLGMQTEEG RGLAP LGGTQV+CKV GLPSS FNTSSH+LFP TLQGA TH P
Sbjct: 302 VVLGMQTEEGCRAEQRGLAPFLGGTQVLCKVGGLPSSAEFNTSSHVLFPGTLQGALTHLP 361
Query: 62 CRWRQGASTDNPPA 75
RWRQG STD PPA
Sbjct: 362 YRWRQGDSTDKPPA 375
>gi|18201900 T-box 6 [Homo sapiens]
Length = 436
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 40 GFNTSSHLLFPATLQGAPTHFPCR 63
G + ++LL PA GAP+H P R
Sbjct: 343 GPSAEAYLLHPAAFHGAPSHLPTR 366
>gi|20127408 mitochondrial trifunctional protein, alpha subunit
precursor [Homo sapiens]
Length = 763
Score = 27.3 bits (59), Expect = 2.7
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 15 MLRGLAPSLGGTQVICKVVGLPSSI 39
+L G P GGTQ + K+VG+P+++
Sbjct: 174 VLLGALPGAGGTQRLPKMVGVPAAL 198
>gi|188595677 integrin, beta 2 precursor [Homo sapiens]
Length = 769
Score = 26.9 bits (58), Expect = 3.6
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 7 QTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHFPCRWRQ 66
QTE G ++ L GG + +V P IG+ + LL AT G HF +
Sbjct: 218 QTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWRNVTRLLVFATDDG--FHFAGDGKL 275
Query: 67 GA 68
GA
Sbjct: 276 GA 277
>gi|89191865 integrin, beta 2 precursor [Homo sapiens]
Length = 769
Score = 26.9 bits (58), Expect = 3.6
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 7 QTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHFPCRWRQ 66
QTE G ++ L GG + +V P IG+ + LL AT G HF +
Sbjct: 218 QTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWRNVTRLLVFATDDG--FHFAGDGKL 275
Query: 67 GA 68
GA
Sbjct: 276 GA 277
>gi|19743886 regulatory factor X4 isoform a [Homo sapiens]
Length = 641
Score = 26.2 bits (56), Expect = 6.1
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 19 LAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAP 57
+ P LG + V+ +VG+ SI + S +L P LQ P
Sbjct: 145 MLPVLGSSTVV-NIVGVCDSILYKAISGVLMPTVLQALP 182
>gi|239748997 PREDICTED: hypothetical protein XP_002346878 [Homo
sapiens]
Length = 297
Score = 26.2 bits (56), Expect = 6.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 5 GMQTEEGHCIMLRGLAPSLGGTQV 28
G+Q EEG C RG A GG Q+
Sbjct: 215 GLQVEEGACRWRRGAADGGGGLQM 238
>gi|239743019 PREDICTED: hypothetical protein XP_002342720 [Homo
sapiens]
Length = 487
Score = 26.2 bits (56), Expect = 6.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 5 GMQTEEGHCIMLRGLAPSLGGTQV 28
G+Q EEG C RG A GG Q+
Sbjct: 405 GLQVEEGACRWRRGAADGGGGLQM 428
>gi|15011898 regulatory factor X4 isoform b [Homo sapiens]
Length = 563
Score = 26.2 bits (56), Expect = 6.1
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 19 LAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAP 57
+ P LG + V+ +VG+ SI + S +L P LQ P
Sbjct: 248 MLPVLGSSTVV-NIVGVCDSILYKAISGVLMPTVLQALP 285
>gi|47132527 regulatory factor X4 isoform c [Homo sapiens]
Length = 735
Score = 26.2 bits (56), Expect = 6.1
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 19 LAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAP 57
+ P LG + V+ +VG+ SI + S +L P LQ P
Sbjct: 239 MLPVLGSSTVV-NIVGVCDSILYKAISGVLMPTVLQALP 276
>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
Length = 808
Score = 26.2 bits (56), Expect = 6.1
Identities = 12/25 (48%), Positives = 12/25 (48%)
Query: 50 PATLQGAPTHFPCRWRQGASTDNPP 74
P T G PT P R GA T PP
Sbjct: 146 PGTPTGTPTRTPSRTAPGALTAKPP 170
>gi|15812180 butyrate response factor 1 [Homo sapiens]
Length = 338
Score = 25.8 bits (55), Expect = 7.9
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 15 MLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPAT 52
ML APS GG + K VG P+ GF + P++
Sbjct: 23 MLNYSAPSAGGCLLDRKAVGTPAGGGFPRRHSVTLPSS 60
>gi|68989263 enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A
dehydrogenase [Homo sapiens]
Length = 723
Score = 25.8 bits (55), Expect = 7.9
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 18 GLAPSLGGTQVICKVVGLPSSIGFNTS 44
GL P GTQ++ ++ G+P+++ TS
Sbjct: 128 GLLPGARGTQLLPRLTGVPAALDLITS 154
>gi|16306500 F-box only protein 21 isoform 2 [Homo sapiens]
Length = 621
Score = 25.8 bits (55), Expect = 7.9
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 27 QVICKVVGLPSSIGF---NTSSHLLFPATLQGAPTHFPCRWRQGA 68
QV+ + G+P S+ + L P P+HF RW QGA
Sbjct: 292 QVLIRRTGIPISMSLLYLTIARQLGVPLEPVNFPSHFLLRWCQGA 336
>gi|16306502 F-box only protein 21 isoform 1 [Homo sapiens]
Length = 628
Score = 25.8 bits (55), Expect = 7.9
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 27 QVICKVVGLPSSIGF---NTSSHLLFPATLQGAPTHFPCRWRQGA 68
QV+ + G+P S+ + L P P+HF RW QGA
Sbjct: 292 QVLIRRTGIPISMSLLYLTIARQLGVPLEPVNFPSHFLLRWCQGA 336
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,525,084
Number of Sequences: 37866
Number of extensions: 149561
Number of successful extensions: 272
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 248
Number of HSP's gapped (non-prelim): 29
length of query: 75
length of database: 18,247,518
effective HSP length: 47
effective length of query: 28
effective length of database: 16,467,816
effective search space: 461098848
effective search space used: 461098848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.