Guide to the Human Genome
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Name: LOC100289391 Sequence: fasta or formatted (75aa) NCBI GI: 239741273
Description:

PREDICTED: hypothetical protein XP_002342153

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3          4           1
 C cysteine            4.0          3           1
 D aspartate           1.3          1           1
 E glutamate           2.7          2           2
 F phenylalanine       4.0          3           1
 G glycine            13.3         10           2
 H histidine           4.0          3           1
 I isoleucine          4.0          3           1
 K lysine              1.3          1           1
 L leucine            10.7          8           2
 M methionine          4.0          3           1
 N asparagine          2.7          2           1
 P proline             9.3          7           2
 Q glutamine           5.3          4           1
 R arginine            4.0          3           1
 S serine              8.0          6           2
 T threonine           8.0          6           1
 V valine              6.7          5           2
 W tryptophan          1.3          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342153 
LOC100129030          1.000   PREDICTED: hypothetical protein 
LOC100130131          0.985   PREDICTED: hypothetical protein 
LOC100130131          0.985   PREDICTED: hypothetical protein 
LOC100132329          0.985   PREDICTED: hypothetical protein 
LOC100131965          0.948   PREDICTED: hypothetical protein 
LOC100291678          0.919   PREDICTED: hypothetical protein XP_002346294 
LOC100130131          0.919   PREDICTED: hypothetical protein 
LOC100132428          0.756   PREDICTED: hypothetical protein 
LOC100289385          0.756   PREDICTED: hypothetical protein XP_002342953 
LOC100132883          0.719   PREDICTED: hypothetical protein 
LOC100132883          0.719   PREDICTED: hypothetical protein 
LOC100290132          0.659   PREDICTED: hypothetical protein XP_002347089 
TBX6                  0.022   T-box 6 
HADHA                 0.015   mitochondrial trifunctional protein, alpha subunit p...
ITGB2                 0.015   integrin, beta 2 precursor 
ITGB2                 0.015   integrin, beta 2 precursor 
RFX4                  0.007   regulatory factor X4 isoform a 
ARL4C                 0.007   ADP-ribosylation factor-like 4C 
LOC100293504          0.007   PREDICTED: hypothetical protein 
LOC100291044          0.007   PREDICTED: hypothetical protein XP_002347153 
LOC100289979          0.007   PREDICTED: hypothetical protein XP_002346878 
LOC100287172          0.007   PREDICTED: hypothetical protein XP_002343001 
LOC100289273          0.007   PREDICTED: hypothetical protein XP_002342720 
RFX4                  0.007   regulatory factor X4 isoform b 
RFX4                  0.007   regulatory factor X4 isoform c 
ZFP36L1               0.007   butyrate response factor 1 
EHHADH                0.007   enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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