Guide to the Human Genome
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Name: LOC100132883 Sequence: fasta or formatted (75aa) NCBI GI: 169163288
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {75aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0          6           1
 C cysteine            2.7          2           1
 D aspartate           4.0          3           1
 E glutamate           4.0          3           2
 F phenylalanine       2.7          2           1
 G glycine            10.7          8           1
 H histidine           4.0          3           1
 I isoleucine          0.0          0           0
 K lysine              2.7          2           1
 L leucine            12.0          9           2
 M methionine          4.0          3           1
 N asparagine          0.0          0           0
 P proline             8.0          6           2
 Q glutamine           9.3          7           2
 R arginine            5.3          4           1
 S serine              6.7          5           2
 T threonine           8.0          6           1
 V valine              6.7          5           2
 W tryptophan          1.3          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100132883          1.000   PREDICTED: hypothetical protein 
LOC100132428          0.902   PREDICTED: hypothetical protein 
LOC100289385          0.902   PREDICTED: hypothetical protein XP_002342953 
LOC100291678          0.758   PREDICTED: hypothetical protein XP_002346294 
LOC100130131          0.758   PREDICTED: hypothetical protein 
LOC100129030          0.735   PREDICTED: hypothetical protein 
LOC100289391          0.735   PREDICTED: hypothetical protein XP_002342153 
LOC100130131          0.735   PREDICTED: hypothetical protein 
LOC100130131          0.735   PREDICTED: hypothetical protein 
LOC100290132          0.720   PREDICTED: hypothetical protein XP_002347089 
LOC100132329          0.720   PREDICTED: hypothetical protein 
LOC100131965          0.682   PREDICTED: hypothetical protein 
BICC1                 0.045   bicaudal C homolog 1 
PGBD3                 0.008   hypothetical protein LOC267004 
CACNA1F               0.008   calcium channel, voltage-dependent, L type, alpha 1F...
GSTCD                 0.008   glutathione S-transferase, C-terminal domain contai...
GSTCD                 0.008   glutathione S-transferase, C-terminal domain contai...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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