Guide to the Human Genome
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Name: LOC646262 Sequence: fasta or formatted (517aa) NCBI GI: 239752721
Description:

PREDICTED: beta-lactamase-like protein ENSP00000383859-like

Not currently referenced in the text

Other entries for this name:
alt mRNA {517aa} PREDICTED: beta-lactamase-like protein ENSP00000383859-like
alt mRNA {517aa} PREDICTED: beta-lactamase-like protein ENSP00000383859-like
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         59           2
 C cysteine            0.8          4           1
 D aspartate           4.6         24           2
 E glutamate           4.4         23           2
 F phenylalanine       3.9         20           1
 G glycine             8.5         44           3
 H histidine           2.9         15           2
 I isoleucine          1.4          7           1
 K lysine              2.3         12           2
 L leucine            14.7         76           3
 M methionine          1.7          9           1
 N asparagine          2.3         12           2
 P proline             9.9         51           3
 Q glutamine           3.1         16           2
 R arginine            7.4         38           2
 S serine              4.8         25           2
 T threonine           4.6         24           1
 V valine              6.4         33           2
 W tryptophan          1.4          7           1
 Y tyrosine            3.5         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: beta-lactamase-like protein ENSP00000383... 
LOC646262             1.000   PREDICTED: beta-lactamase-like protein ENSP00000383...
LOC646262             1.000   PREDICTED: beta-lactamase-like protein ENSP00000383...
LACTB                 0.015   lactamase, beta isoform a 
LACTB                 0.015   lactamase, beta isoform b 
MAML1                 0.010   mastermind-like 1 
LOC100287293          0.009   PREDICTED: hypothetical protein XP_002343924 
LOC100127891          0.007   PREDICTED: similar to hCG2042508 
LOC100127891          0.007   PREDICTED: similar to hCG2042508 
LOC100127891          0.007   PREDICTED: similar to hCG2042508 
SH3D20                0.007   SH3 domain containing 20 
RCOR2                 0.007   REST corepressor 2 
ZNF579                0.007   zinc finger protein 579 
FLJ22184              0.006   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.006   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.006   PREDICTED: hypothetical protein LOC80164 
TBX1                  0.006   T-box 1 isoform B 
TBX1                  0.006   T-box 1 isoform C 
TBX1                  0.006   T-box 1 isoform A 
ASAP2                 0.006   ArfGAP with SH3 domain, ankyrin repeat and PH domain ...
NFKB1                 0.006   nuclear factor kappa-B, subunit 1 
MED15                 0.005   mediator complex subunit 15 isoform a 
MED15                 0.005   mediator complex subunit 15 isoform b 
CSTF2T                0.005   cleavage stimulation factor, 3' pre-RNA, subunit 2, ...
MYO16                 0.005   myosin heavy chain Myr 8 
EPHA1                 0.005   ephrin receptor EphA1 
IL2RB                 0.005   interleukin 2 receptor beta precursor 
BSN                   0.005   bassoon protein 
MLYCD                 0.005   malonyl-CoA decarboxylase precursor 
MIXL1                 0.005   Mix-like homeobox protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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