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Search of human proteins with 239752675
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752675 PREDICTED: hypothetical protein XP_002345422 [Homo
sapiens]
(247 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752675 PREDICTED: hypothetical protein XP_002345422 [Homo ... 508 e-144
gi|239747214 PREDICTED: hypothetical protein XP_002346940 [Homo ... 505 e-143
gi|239741020 PREDICTED: hypothetical protein XP_002342065 [Homo ... 505 e-143
gi|169161029 PREDICTED: hypothetical protein [Homo sapiens] 37 0.021
gi|89257348 homeo box HB9 [Homo sapiens] 35 0.060
gi|239755899 PREDICTED: hypothetical protein [Homo sapiens] 35 0.079
gi|239750388 PREDICTED: hypothetical protein XP_002347412 [Homo ... 35 0.079
gi|239745938 PREDICTED: hypothetical protein [Homo sapiens] 35 0.079
gi|95091988 Rho GTPase activating protein 6 isoform 3 [Homo sapi... 35 0.079
gi|95091875 Rho GTPase activating protein 6 isoform 1 [Homo sapi... 35 0.079
gi|239753721 PREDICTED: hypothetical protein [Homo sapiens] 34 0.10
gi|239748254 PREDICTED: hypothetical protein XP_002346600 [Homo ... 34 0.10
gi|239747812 PREDICTED: ankyrin repeat domain 36 [Homo sapiens] 34 0.10
gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo ... 34 0.10
gi|239742155 PREDICTED: hypothetical protein XP_002342442 [Homo ... 34 0.10
gi|239508745 PREDICTED: hypothetical protein [Homo sapiens] 34 0.10
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 34 0.10
gi|239755255 PREDICTED: hypothetical protein [Homo sapiens] 33 0.23
gi|239754489 PREDICTED: hypothetical protein [Homo sapiens] 33 0.23
gi|239749748 PREDICTED: hypothetical protein XP_002347156 [Homo ... 33 0.23
gi|169179759 PREDICTED: hypothetical protein [Homo sapiens] 33 0.23
gi|239744003 PREDICTED: hypothetical protein XP_002343004 [Homo ... 33 0.23
gi|169180158 PREDICTED: hypothetical protein [Homo sapiens] 33 0.23
gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens] 33 0.23
gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens] 33 0.23
gi|239753867 PREDICTED: hypothetical protein [Homo sapiens] 33 0.30
gi|239748428 PREDICTED: hypothetical protein XP_002346657 [Homo ... 33 0.30
gi|169208084 PREDICTED: hypothetical protein [Homo sapiens] 33 0.30
gi|239742361 PREDICTED: hypothetical protein XP_002342502 [Homo ... 33 0.30
gi|24430192 keratin 16 [Homo sapiens] 33 0.30
>gi|239752675 PREDICTED: hypothetical protein XP_002345422 [Homo
sapiens]
Length = 247
Score = 508 bits (1309), Expect = e-144
Identities = 247/247 (100%), Positives = 247/247 (100%)
Query: 1 MPPGSLSTSMSSREKLGAGRSLGSRRAASLLSTAAPKLWWRAGVFALLATARLLGISCWV 60
MPPGSLSTSMSSREKLGAGRSLGSRRAASLLSTAAPKLWWRAGVFALLATARLLGISCWV
Sbjct: 1 MPPGSLSTSMSSREKLGAGRSLGSRRAASLLSTAAPKLWWRAGVFALLATARLLGISCWV 60
Query: 61 PSLRAAGLSVLRTMGHGSSCPGGRGCGGAGTWGWKAASSLTRGEPRTIGSPEAGFPPASS 120
PSLRAAGLSVLRTMGHGSSCPGGRGCGGAGTWGWKAASSLTRGEPRTIGSPEAGFPPASS
Sbjct: 61 PSLRAAGLSVLRTMGHGSSCPGGRGCGGAGTWGWKAASSLTRGEPRTIGSPEAGFPPASS 120
Query: 121 RSSEWKRCPRSFSSKELSECRWAMLGGCGAHMRRGAEGRRGGALAVQLPAPGPVLSCNRF 180
RSSEWKRCPRSFSSKELSECRWAMLGGCGAHMRRGAEGRRGGALAVQLPAPGPVLSCNRF
Sbjct: 121 RSSEWKRCPRSFSSKELSECRWAMLGGCGAHMRRGAEGRRGGALAVQLPAPGPVLSCNRF 180
Query: 181 APAAARSGPGRLLRFLRGLAGGRRLRPRRWALGGRGCSGVGSALAEHQCASQKAHLYLRE 240
APAAARSGPGRLLRFLRGLAGGRRLRPRRWALGGRGCSGVGSALAEHQCASQKAHLYLRE
Sbjct: 181 APAAARSGPGRLLRFLRGLAGGRRLRPRRWALGGRGCSGVGSALAEHQCASQKAHLYLRE 240
Query: 241 QSSFPAA 247
QSSFPAA
Sbjct: 241 QSSFPAA 247
>gi|239747214 PREDICTED: hypothetical protein XP_002346940 [Homo
sapiens]
Length = 247
Score = 505 bits (1301), Expect = e-143
Identities = 245/247 (99%), Positives = 247/247 (100%)
Query: 1 MPPGSLSTSMSSREKLGAGRSLGSRRAASLLSTAAPKLWWRAGVFALLATARLLGISCWV 60
MPPGSLSTSMSSREKLGAGRSLGSRRAASLLSTAAPKLWWRAGVFALLATARLLGISCWV
Sbjct: 1 MPPGSLSTSMSSREKLGAGRSLGSRRAASLLSTAAPKLWWRAGVFALLATARLLGISCWV 60
Query: 61 PSLRAAGLSVLRTMGHGSSCPGGRGCGGAGTWGWKAASSLTRGEPRTIGSPEAGFPPASS 120
PSLRAAGLSVLRTMGHGSSCPGGRGCGGAGTWGWKAASSLTRGEPRTIGSPEAGFPPASS
Sbjct: 61 PSLRAAGLSVLRTMGHGSSCPGGRGCGGAGTWGWKAASSLTRGEPRTIGSPEAGFPPASS 120
Query: 121 RSSEWKRCPRSFSSKELSECRWAMLGGCGAHMRRGAEGRRGGALAVQLPAPGPVLSCNRF 180
RSSEWKRCPRSFSSKELSECRWAMLGGCGAH+RRGAEGRRGGALAVQLPAPGPVLSC+RF
Sbjct: 121 RSSEWKRCPRSFSSKELSECRWAMLGGCGAHLRRGAEGRRGGALAVQLPAPGPVLSCSRF 180
Query: 181 APAAARSGPGRLLRFLRGLAGGRRLRPRRWALGGRGCSGVGSALAEHQCASQKAHLYLRE 240
APAAARSGPGRLLRFLRGLAGGRRLRPRRWALGGRGCSGVGSALAEHQCASQKAHLYLRE
Sbjct: 181 APAAARSGPGRLLRFLRGLAGGRRLRPRRWALGGRGCSGVGSALAEHQCASQKAHLYLRE 240
Query: 241 QSSFPAA 247
QSSFPAA
Sbjct: 241 QSSFPAA 247
>gi|239741020 PREDICTED: hypothetical protein XP_002342065 [Homo
sapiens]
Length = 247
Score = 505 bits (1301), Expect = e-143
Identities = 245/247 (99%), Positives = 247/247 (100%)
Query: 1 MPPGSLSTSMSSREKLGAGRSLGSRRAASLLSTAAPKLWWRAGVFALLATARLLGISCWV 60
MPPGSLSTSMSSREKLGAGRSLGSRRAASLLSTAAPKLWWRAGVFALLATARLLGISCWV
Sbjct: 1 MPPGSLSTSMSSREKLGAGRSLGSRRAASLLSTAAPKLWWRAGVFALLATARLLGISCWV 60
Query: 61 PSLRAAGLSVLRTMGHGSSCPGGRGCGGAGTWGWKAASSLTRGEPRTIGSPEAGFPPASS 120
PSLRAAGLSVLRTMGHGSSCPGGRGCGGAGTWGWKAASSLTRGEPRTIGSPEAGFPPASS
Sbjct: 61 PSLRAAGLSVLRTMGHGSSCPGGRGCGGAGTWGWKAASSLTRGEPRTIGSPEAGFPPASS 120
Query: 121 RSSEWKRCPRSFSSKELSECRWAMLGGCGAHMRRGAEGRRGGALAVQLPAPGPVLSCNRF 180
RSSEWKRCPRSFSSKELSECRWAMLGGCGAH+RRGAEGRRGGALAVQLPAPGPVLSC+RF
Sbjct: 121 RSSEWKRCPRSFSSKELSECRWAMLGGCGAHLRRGAEGRRGGALAVQLPAPGPVLSCSRF 180
Query: 181 APAAARSGPGRLLRFLRGLAGGRRLRPRRWALGGRGCSGVGSALAEHQCASQKAHLYLRE 240
APAAARSGPGRLLRFLRGLAGGRRLRPRRWALGGRGCSGVGSALAEHQCASQKAHLYLRE
Sbjct: 181 APAAARSGPGRLLRFLRGLAGGRRLRPRRWALGGRGCSGVGSALAEHQCASQKAHLYLRE 240
Query: 241 QSSFPAA 247
QSSFPAA
Sbjct: 241 QSSFPAA 247
>gi|169161029 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 36.6 bits (83), Expect = 0.021
Identities = 53/183 (28%), Positives = 68/183 (37%), Gaps = 47/183 (25%)
Query: 63 LRAAGLSVLRTMGHGSSCPGGRGCGGAGTWGWKAASSLTRGEPRTIGSPEAGFPPASSRS 122
+R+ G+ +LR +CP RGC G+ G A G PR P A P A+ R
Sbjct: 40 VRSCGI-LLRACRRSLACPAVRGCKREGSPGVSAQGGPLEGTPR----PAA--PGAAPR- 91
Query: 123 SEWKRCPRSFSSKELSECRWAMLGGCGAHMRRGAEGRR--------GGALAVQLPAPG-- 172
PR ++ R A +GG G RG + R GG L P+PG
Sbjct: 92 ------PR----RQRLRRRRAKVGGWGCARARGLDRRAPGEGGRSPGGGLE---PSPGAR 138
Query: 173 ------PVLSCNRFAPAAARSGPGRLLRFL----------RGLAGGRRLRPRRWALGGRG 216
P + +R +R P LR L G GGR L RR G G
Sbjct: 139 GAVGAAPAAARHRKPRGRSRRAPQMPLRVLPPILPGLSRAGGATGGRGLPGRRGLPGRSG 198
Query: 217 CSG 219
G
Sbjct: 199 LQG 201
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 35.0 bits (79), Expect = 0.060
Identities = 51/188 (27%), Positives = 71/188 (37%), Gaps = 17/188 (9%)
Query: 62 SLRAAGLSVLRTMGHGSSCPGGRGCGGAGTWGWKAASSLTRGEPRTIGSPEAGFPPASSR 121
S ++A L+++ ++ +S GG G GG + G + S EP P A PA
Sbjct: 22 SAQSAPLALVTSLAAAASGTGGGGGGGGASGGTSGSCSPASSEP-----PAA---PADRL 73
Query: 122 SSEWKRCPRSFSSKELSECRWAMLGGCGAHMRRGAEGRRGGALAVQLPAPGPVLSCNRFA 181
+E PR L A+L G G G GG P + A
Sbjct: 74 RAESPSPPR------LLAAHCALLPKPGFLGAGGGGGGTGGGHGGPHHHAHPGAAAAAAA 127
Query: 182 PAAARSGPGRLLRFLRGLAGGRRLRPRRWALGGRGCSGVGSALAEHQCASQK---AHLYL 238
AAA + G L G A G P + AL G G +A A A Q ++ Y
Sbjct: 128 AAAAAAAGGLALGLHPGGAQGGAGLPAQAALYGHPVYGYSAAAAAAALAGQHPALSYSYP 187
Query: 239 REQSSFPA 246
+ Q + PA
Sbjct: 188 QVQGAHPA 195
>gi|239755899 PREDICTED: hypothetical protein [Homo sapiens]
Length = 459
Score = 34.7 bits (78), Expect = 0.079
Identities = 47/155 (30%), Positives = 60/155 (38%), Gaps = 32/155 (20%)
Query: 81 PGGRGCG--GAGTWGWKAASS--LTRGEPR----TIGSPEAGFPPASSRSSEWKRCPRS- 131
PG RG G T GW+ S L+ G R T SP + P + W PR+
Sbjct: 110 PGRRGGTELGEDTRGWRGRSRELLSTGSCRRREQTRPSPLSISKPRRADLGCWGSAPRAL 169
Query: 132 ---FSSKELSECRWAMLGGCG-AHMRRGAEGRRGGA--LAVQLPAPGPVLSCNRF--APA 183
F +L C C A +R A+G A +A PA GP L+ R P+
Sbjct: 170 PCPFGRGQLPAC-------CSPATVRPAAQGCAQPAPRVAAGTPAVGPTLALRRLDKLPS 222
Query: 184 AARSGPGRLLRFLRGLAGGRRLRPRRWALGGRGCS 218
+ P +L G L WAL GR CS
Sbjct: 223 SRAPAPSKLT--------GGSLAGLLWALAGRACS 249
>gi|239750388 PREDICTED: hypothetical protein XP_002347412 [Homo
sapiens]
Length = 459
Score = 34.7 bits (78), Expect = 0.079
Identities = 47/155 (30%), Positives = 60/155 (38%), Gaps = 32/155 (20%)
Query: 81 PGGRGCG--GAGTWGWKAASS--LTRGEPR----TIGSPEAGFPPASSRSSEWKRCPRS- 131
PG RG G T GW+ S L+ G R T SP + P + W PR+
Sbjct: 110 PGRRGGTELGEDTRGWRGRSRELLSTGSCRRREQTRPSPLSISKPRRADLGCWGSAPRAL 169
Query: 132 ---FSSKELSECRWAMLGGCG-AHMRRGAEGRRGGA--LAVQLPAPGPVLSCNRF--APA 183
F +L C C A +R A+G A +A PA GP L+ R P+
Sbjct: 170 PCPFGRGQLPAC-------CSPATVRPAAQGCAQPAPRVAAGTPAVGPTLALRRLDKLPS 222
Query: 184 AARSGPGRLLRFLRGLAGGRRLRPRRWALGGRGCS 218
+ P +L G L WAL GR CS
Sbjct: 223 SRAPAPSKLT--------GGSLAGLLWALAGRACS 249
>gi|239745938 PREDICTED: hypothetical protein [Homo sapiens]
Length = 336
Score = 34.7 bits (78), Expect = 0.079
Identities = 52/182 (28%), Positives = 66/182 (36%), Gaps = 26/182 (14%)
Query: 47 LLATARLLGISCWVPSLRAAGLSVLRTMGHGSSCPGGRGCGGAGTWGWKAASSL-----T 101
LL RLLG+ A + ++ HG GG G A A+S L
Sbjct: 110 LLVVLRLLGLLDVAVLFLLAPVVIVHHFVHGPPGRGGPGQVAAAAAAAPASSPLPPGRWC 169
Query: 102 RGEPRTIGSPEAGFPPASSRSSEWK----------RCPRSFSSKELSECRWAMLGGCGAH 151
G+ R + P PP +S ++ W+ CP +ELS LGG G
Sbjct: 170 LGDQRRL-PPATAAPPWASSATAWRLPQPRRRRRPTCPCCSRCRELSPPMGPDLGGGGGG 228
Query: 152 MRRGAEGRRGGALAVQLPAPG--------PVLSCNRFA-PAAARSGPGRLLRFLRGLAGG 202
GA G GA A G P++S R R GR LRG AGG
Sbjct: 229 AGAGA-GAGAGAQRSAAEAAGCLGCLPRLPLMSEPRTGEKGKRRRRDGRGWGGLRGRAGG 287
Query: 203 RR 204
R
Sbjct: 288 PR 289
>gi|95091988 Rho GTPase activating protein 6 isoform 3 [Homo
sapiens]
Length = 765
Score = 34.7 bits (78), Expect = 0.079
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 117 PASSRSSEWKRCPRSFSSKELSECRW---AMLGGCGAHMRRGAEGRRGGALAVQLPAPG- 172
PASS ++ K FS ++L + R A++GGCG+ GAEG GA A +L +P
Sbjct: 16 PASSSAASAK----GFSKRKLRQTRSLDPALIGGCGSD-EAGAEGSARGATAGRLYSPSL 70
Query: 173 PVLSCNRFAPAAARSGPGRLLR 194
P S +++R P R R
Sbjct: 71 PAESLGPRLASSSRGPPPRATR 92
>gi|95091875 Rho GTPase activating protein 6 isoform 1 [Homo
sapiens]
Length = 974
Score = 34.7 bits (78), Expect = 0.079
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 117 PASSRSSEWKRCPRSFSSKELSECRW---AMLGGCGAHMRRGAEGRRGGALAVQLPAPG- 172
PASS ++ K FS ++L + R A++GGCG+ GAEG GA A +L +P
Sbjct: 16 PASSSAASAK----GFSKRKLRQTRSLDPALIGGCGSD-EAGAEGSARGATAGRLYSPSL 70
Query: 173 PVLSCNRFAPAAARSGPGRLLR 194
P S +++R P R R
Sbjct: 71 PAESLGPRLASSSRGPPPRATR 92
>gi|239753721 PREDICTED: hypothetical protein [Homo sapiens]
Length = 342
Score = 34.3 bits (77), Expect = 0.10
Identities = 67/214 (31%), Positives = 76/214 (35%), Gaps = 40/214 (18%)
Query: 36 PKLWWRAGVFALLATARLLGISCWVPSLRAAGLSVLRTMGHGSSCPGGRGCGGA------ 89
P W G T R S P RA G S LR H PG R GG+
Sbjct: 77 PAASWAPGPLREQGTRRGCRRSLEQPRERARGQSSLRAAAHHRHNPGRRRGGGSPAAREG 136
Query: 90 GTWGWKAASSLTRGEPRTIG-------SPEAGFPPASS--RSSEWKR-CPRSF---SSKE 136
GW A L PR G +P+AG P A++ R+ E KR PR S
Sbjct: 137 DAAGWLLAPGL---GPRLRGGRGGWSPAPKAGSPMAAAPGRTCEGKRTAPRRMLLPDSPY 193
Query: 137 LSECRWAMLGGCGAHMRRGAEGRRGGALAVQLP---APGPVLSCNRFAPAAARSGPGRLL 193
+ A C A RR A V P P L R A AA G L
Sbjct: 194 AGRPQRARTSLCAA-----PASRRPPAPTVAAPRGLETRPALP--RRAGAAVHGSEGLAL 246
Query: 194 RFLRGLA----GGRRLR--PRRWALGGRGCSGVG 221
R R A G RR R P W L R +G+G
Sbjct: 247 RAKRRDANAGSGARRCRELPESWIL--RAAAGLG 278
>gi|239748254 PREDICTED: hypothetical protein XP_002346600 [Homo
sapiens]
Length = 342
Score = 34.3 bits (77), Expect = 0.10
Identities = 67/214 (31%), Positives = 76/214 (35%), Gaps = 40/214 (18%)
Query: 36 PKLWWRAGVFALLATARLLGISCWVPSLRAAGLSVLRTMGHGSSCPGGRGCGGA------ 89
P W G T R S P RA G S LR H PG R GG+
Sbjct: 77 PAASWAPGPLREQGTRRGCRRSLEQPRERARGQSSLRAAAHHRHNPGRRRGGGSPAAREG 136
Query: 90 GTWGWKAASSLTRGEPRTIG-------SPEAGFPPASS--RSSEWKR-CPRSF---SSKE 136
GW A L PR G +P+AG P A++ R+ E KR PR S
Sbjct: 137 DAAGWLLAPGL---GPRLRGGRGGWSPAPKAGSPMAAAPGRTCEGKRTAPRRMLLPDSPY 193
Query: 137 LSECRWAMLGGCGAHMRRGAEGRRGGALAVQLP---APGPVLSCNRFAPAAARSGPGRLL 193
+ A C A RR A V P P L R A AA G L
Sbjct: 194 AGRPQRARTSLCAA-----PASRRPPAPTVAAPRGLETRPALP--RRAGAAVHGSEGLAL 246
Query: 194 RFLRGLA----GGRRLR--PRRWALGGRGCSGVG 221
R R A G RR R P W L R +G+G
Sbjct: 247 RAKRRDANAGSGARRCRELPESWIL--RAAAGLG 278
>gi|239747812 PREDICTED: ankyrin repeat domain 36 [Homo sapiens]
Length = 753
Score = 34.3 bits (77), Expect = 0.10
Identities = 57/212 (26%), Positives = 76/212 (35%), Gaps = 59/212 (27%)
Query: 58 CWVPSLRAAGLSV-LRTMGHGSSCPGGRGCGG---------AGTWGWKAASSLTRGEPRT 107
C VPS+R+ L + + G G G G A S+ +RG PR
Sbjct: 49 CRVPSVRSCALGAGQEQLARAAQPVGPLGAAGRSSGKPRQPTGAAAAAATSTWSRG-PRG 107
Query: 108 IGSPEAGFPPASSRSSEWKRCPRSFSSKELSECRWAMLGGCGAH-MRRGAEGRR-----G 161
+G P+ ASSR+ L+ A+ G H + G + R G
Sbjct: 108 LGIPDQAC--ASSRADP---------GASLAAASQAVCGRSAGHGLPPGVQEARTLRPDG 156
Query: 162 GALAVQ--------LPAPGPVLSC-----------------NRFAPAAARSGPGRLLRFL 196
GAL Q P P P L C +R AP +A G + ++
Sbjct: 157 GALRAQEAIPREPRQPPPEPELQCRLQVVRWLQLWQPRIPSSRLAPISADPGGDAVAKWG 216
Query: 197 RGLAGGRRLR----PRRWALGG--RGCSGVGS 222
G +GG R R P WA G RG VGS
Sbjct: 217 CGPSGGTRRRSTTQPHPWAAEGPARGTPSVGS 248
>gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo
sapiens]
Length = 538
Score = 34.3 bits (77), Expect = 0.10
Identities = 50/181 (27%), Positives = 64/181 (35%), Gaps = 30/181 (16%)
Query: 49 ATARLLGISCWVPSLRAAGLSVLRTMGHGSSCPGGRGCGGAGTWGWKAASSLTRGEPRTI 108
A R S V + R AG++ G G S PG G GW A ++ R +
Sbjct: 99 APRRQRASSAQVRAARPAGMAA----GTGRSGPGSARLGLGS--GWDPARAVAPRAARAL 152
Query: 109 GSPEAGFPPASSRSSEWKRCPRSFSSKELSECRWAMLGGCGAHMR----------RGAEG 158
G+ G ++ S C ++ +A GG + R RG
Sbjct: 153 GAALFGRAVHTAALSG-PHCRLRCGARAF----YAAAGGASSRRRQRGRNPALIVRGPGP 207
Query: 159 RRGGALAVQLP------APGPVLSCNRFAPAAARSGPG---RLLRFLRGLAGGRRLRPRR 209
RRGG L P +P P R P GP R LR LRG G R R R
Sbjct: 208 RRGGGLTSAPPGLPPLASPPPFWELPRPPPPPPPPGPALLPRRLRELRGKEVGLRPRTRG 267
Query: 210 W 210
W
Sbjct: 268 W 268
>gi|239742155 PREDICTED: hypothetical protein XP_002342442 [Homo
sapiens]
Length = 342
Score = 34.3 bits (77), Expect = 0.10
Identities = 67/214 (31%), Positives = 76/214 (35%), Gaps = 40/214 (18%)
Query: 36 PKLWWRAGVFALLATARLLGISCWVPSLRAAGLSVLRTMGHGSSCPGGRGCGGA------ 89
P W G T R S P RA G S LR H PG R GG+
Sbjct: 77 PAASWAPGPLREQGTRRGCRRSLEQPRERARGQSSLRAAAHHRHNPGRRRGGGSPAAREG 136
Query: 90 GTWGWKAASSLTRGEPRTIG-------SPEAGFPPASS--RSSEWKR-CPRSF---SSKE 136
GW A L PR G +P+AG P A++ R+ E KR PR S
Sbjct: 137 DAAGWLLAPGL---GPRLRGGRGGWSPAPKAGSPMAAAPGRTCEGKRTAPRRMLLPDSPY 193
Query: 137 LSECRWAMLGGCGAHMRRGAEGRRGGALAVQLP---APGPVLSCNRFAPAAARSGPGRLL 193
+ A C A RR A V P P L R A AA G L
Sbjct: 194 AGRPQRARTSLCAA-----PASRRPPAPTVAAPRGLETRPALP--RRAGAAVHGSEGLAL 246
Query: 194 RFLRGLA----GGRRLR--PRRWALGGRGCSGVG 221
R R A G RR R P W L R +G+G
Sbjct: 247 RAKRRDANAGSGARRCRELPESWIL--RAAAGLG 278
>gi|239508745 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 34.3 bits (77), Expect = 0.10
Identities = 48/152 (31%), Positives = 56/152 (36%), Gaps = 9/152 (5%)
Query: 81 PGGRGCGGAGTWGWKAASSLTRG----EPRTIGSPEAGFPPASSRSSEWKRCPRSFSSKE 136
PGG+ A + TRG R P PP S + SS+
Sbjct: 38 PGGKALSTRALQPGGALEAGTRGGREGHRRLRQPPTPSAPPGSPLHEGFLLIALFPSSQN 97
Query: 137 LSECRWAMLGGCGAHMRRGAEGRRGGALAVQLPAPGPVLSCNRFAPA--AARSGPGRLLR 194
L G +R GA G RG V P P L +FA A AAR+G R R
Sbjct: 98 RHRSAGRGLAGRLQQVRPGAAGPRGRLPWVTGPRPAGSLPAAQFAAASGAARAG-RRRER 156
Query: 195 FLRGLAGGRRLRPRR-WALGGRGCSGVGSALA 225
G + G P GGRGCS GSA A
Sbjct: 157 ACAGRSAGDAAGPEAPQPTGGRGCSR-GSATA 187
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 34.3 bits (77), Expect = 0.10
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 146 GGCGAHMRRGAEGRRGGALAVQLPAPGPVLSCNR--FAPAAARSGP 189
GG G RRG G RGG + P PG L+ NR P +SGP
Sbjct: 11 GGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGP 56
>gi|239755255 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 33.1 bits (74), Expect = 0.23
Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 64 RAAGLSVLRTMGHGSSCPGGRGCGGAGTWGWKAASSLTRGEPRTIGSPEAGFPPASSRSS 123
RAA + GHG PGG GCGG G + L GE G+ G S ++
Sbjct: 198 RAAEHPAVGGRGHG---PGGHGCGGWRWPGRRRWRGLAPGEEANEGAVGVG---GGSAAA 251
Query: 124 EWKRCPRSFSSKELSECRWAM 144
R PRS S + L A+
Sbjct: 252 SLARGPRSESGRGLDPAEGAV 272
>gi|239754489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 228
Score = 33.1 bits (74), Expect = 0.23
Identities = 47/154 (30%), Positives = 61/154 (39%), Gaps = 40/154 (25%)
Query: 74 MGHGSSCPGGRGCGGAGTWGWKAASSLTRGEPRTIGSPEAGFPPASSRSSEWKRCPRSFS 133
M + +S P R G G +AA++ TR AG PA++ S + P
Sbjct: 27 MRNSNSRPSSRASAGPGLCRTEAAAAATR----------AGAAPATAESPDTPEEPPEEP 76
Query: 134 SKELSECRWAMLGGCGAHMRRGAEGRRG----GALAVQLPAPGPVLSCNRFAPAAARSGP 189
+ ++ GGCGA + A GRR GA A L G V R+ P
Sbjct: 77 APAIAPGGGG--GGCGA--QHWAAGRRAQREQGAGAAVLADFGHV-----------RAAP 121
Query: 190 GRLLRFLRGLAGGRRLRPRRWALGGRGCSGVGSA 223
L R RRL+ RR GGRG G G A
Sbjct: 122 SGLRR--------RRLQRRR---GGRGGRGAGRA 144
>gi|239749748 PREDICTED: hypothetical protein XP_002347156 [Homo
sapiens]
Length = 446
Score = 33.1 bits (74), Expect = 0.23
Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 64 RAAGLSVLRTMGHGSSCPGGRGCGGAGTWGWKAASSLTRGEPRTIGSPEAGFPPASSRSS 123
RAA + GHG PGG GCGG G + L GE G+ G S ++
Sbjct: 347 RAAEHPAVGGRGHG---PGGHGCGGWRWPGRRRWRGLAPGEEANEGAVGVG---GGSAAA 400
Query: 124 EWKRCPRSFSSKELSECRWAM 144
R PRS S + L A+
Sbjct: 401 SLARGPRSESGRGLDPAEGAV 421
>gi|169179759 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 33.1 bits (74), Expect = 0.23
Identities = 28/88 (31%), Positives = 33/88 (37%), Gaps = 15/88 (17%)
Query: 41 RAGVFALLATARLLGISCW---VPSLRAAGLSVLRTMGHGSSCPGGRG------CGGAGT 91
R GV A G+S W P + + G+ R GS C G R CGGAG
Sbjct: 9 RCGVRVCGAQGPRCGVSVWGCRAPDVGSVGVG-RRVPDAGSECVGHRAPDAGSVCGGAGP 67
Query: 92 -----WGWKAASSLTRGEPRTIGSPEAG 114
WGW A S + G P G
Sbjct: 68 PMRGQWGWGAGSPMRGQSVWGAGPPMRG 95
>gi|239744003 PREDICTED: hypothetical protein XP_002343004 [Homo
sapiens]
Length = 446
Score = 33.1 bits (74), Expect = 0.23
Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 64 RAAGLSVLRTMGHGSSCPGGRGCGGAGTWGWKAASSLTRGEPRTIGSPEAGFPPASSRSS 123
RAA + GHG PGG GCGG G + L GE G+ G S ++
Sbjct: 347 RAAEHPAVGGRGHG---PGGHGCGGWRWPGRRRWRGLAPGEEANEGAVGVG---GGSAAA 400
Query: 124 EWKRCPRSFSSKELSECRWAM 144
R PRS S + L A+
Sbjct: 401 SLARGPRSESGRGLDPAEGAV 421
>gi|169180158 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 33.1 bits (74), Expect = 0.23
Identities = 28/88 (31%), Positives = 33/88 (37%), Gaps = 15/88 (17%)
Query: 41 RAGVFALLATARLLGISCW---VPSLRAAGLSVLRTMGHGSSCPGGRG------CGGAGT 91
R GV A G+S W P + + G+ R GS C G R CGGAG
Sbjct: 9 RCGVRVCGAQGPRCGVSVWGCRAPDVGSVGVG-RRVPDAGSECVGHRAPDAGSVCGGAGP 67
Query: 92 -----WGWKAASSLTRGEPRTIGSPEAG 114
WGW A S + G P G
Sbjct: 68 PMRGQWGWGAGSPMRGQSVWGAGPPMRG 95
>gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]
Length = 694
Score = 33.1 bits (74), Expect = 0.23
Identities = 33/98 (33%), Positives = 39/98 (39%), Gaps = 12/98 (12%)
Query: 105 PRTIGSPEAG-FPPASSRSSEWKRCPRSFSSKELSECRWAMLGGCGAHMRRGAEGRRGGA 163
P +P G + P R+SE R SS SE W GG G R A RR +
Sbjct: 218 PDPASAPGRGNYGPPVRRASE----ARMSSSSRDSES-WDHSGGAGDSSRSPAGLRRANS 272
Query: 164 LAVQLPAPGPVLS------CNRFAPAAARSGPGRLLRF 195
+ PAPG V S P +R GPG RF
Sbjct: 273 VQASRPAPGSVQSPAPPQPGQPGTPGGSRPGPGPAGRF 310
>gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]
Length = 690
Score = 33.1 bits (74), Expect = 0.23
Identities = 33/98 (33%), Positives = 39/98 (39%), Gaps = 12/98 (12%)
Query: 105 PRTIGSPEAG-FPPASSRSSEWKRCPRSFSSKELSECRWAMLGGCGAHMRRGAEGRRGGA 163
P +P G + P R+SE R SS SE W GG G R A RR +
Sbjct: 214 PDPASAPGRGNYGPPVRRASE----ARMSSSSRDSES-WDHSGGAGDSSRSPAGLRRANS 268
Query: 164 LAVQLPAPGPVLS------CNRFAPAAARSGPGRLLRF 195
+ PAPG V S P +R GPG RF
Sbjct: 269 VQASRPAPGSVQSPAPPQPGQPGTPGGSRPGPGPAGRF 306
>gi|239753867 PREDICTED: hypothetical protein [Homo sapiens]
Length = 215
Score = 32.7 bits (73), Expect = 0.30
Identities = 40/129 (31%), Positives = 46/129 (35%), Gaps = 28/129 (21%)
Query: 82 GGRGCGGAGTWGWKAASSLTRGEPRTIGSPEAGFPPASSRSSEWKRCPRSFSSKELSECR 141
G RGCGG G W TR P SPE G P R +E R
Sbjct: 7 GWRGCGGLGGRTW-----ATRPLPGP-HSPEFGLPGWRVRRGR----------REAQGAR 50
Query: 142 WAMLGGCGAHMRRGAEGRRGGALAVQLPAPGPVLSCNRFAPAAARSGPGRLLRFLRGLAG 201
W GG A + RR A P GPV +C A AA G+ + +AG
Sbjct: 51 WP--GGGAALLAGRLRPRRRWA-----PGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAG 103
Query: 202 GRRLRPRRW 210
P RW
Sbjct: 104 -----PLRW 107
>gi|239748428 PREDICTED: hypothetical protein XP_002346657 [Homo
sapiens]
Length = 215
Score = 32.7 bits (73), Expect = 0.30
Identities = 40/129 (31%), Positives = 46/129 (35%), Gaps = 28/129 (21%)
Query: 82 GGRGCGGAGTWGWKAASSLTRGEPRTIGSPEAGFPPASSRSSEWKRCPRSFSSKELSECR 141
G RGCGG G W TR P SPE G P R +E R
Sbjct: 7 GWRGCGGLGGRTW-----ATRPLPGP-HSPEFGLPGWRVRRGR----------REAQGAR 50
Query: 142 WAMLGGCGAHMRRGAEGRRGGALAVQLPAPGPVLSCNRFAPAAARSGPGRLLRFLRGLAG 201
W GG A + RR A P GPV +C A AA G+ + +AG
Sbjct: 51 WP--GGGAALLAGRLRPRRRWA-----PGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAG 103
Query: 202 GRRLRPRRW 210
P RW
Sbjct: 104 -----PLRW 107
>gi|169208084 PREDICTED: hypothetical protein [Homo sapiens]
Length = 266
Score = 32.7 bits (73), Expect = 0.30
Identities = 47/160 (29%), Positives = 61/160 (38%), Gaps = 26/160 (16%)
Query: 75 GHGSSCPGGRGCGGAGTWGWKAASSLTRGEPRTIGSPEAGFPPASSRSSEWKRCPRSFSS 134
G + PGG GG G G SL+ + S P SS +S R F
Sbjct: 67 GPCGAAPGGCASGGCGVMGVSLTVSLSF---LSWSSSRCRVPARSSAASACSCRLRIFLR 123
Query: 135 KELSECRWAMLGGCGAHMRRGAEGRRGGALAVQLPAPG-----PVLSCNRFAPAAARSGP 189
SE A+ +GRR G L + PA P LS + P+A P
Sbjct: 124 TASSELLPAI----------APDGRRAGGLQWERPAAALRTRLPRLS---WLPSAGPPRP 170
Query: 190 GRLLRFLRGLAGG--RRLRP---RRWALGGRGCSGVGSAL 224
G +R+ R L G R+ +P RR GGR G A+
Sbjct: 171 GLSVRWRRPLRPGAVRKSQPPGLRRQTAGGRARLGGARAV 210
>gi|239742361 PREDICTED: hypothetical protein XP_002342502 [Homo
sapiens]
Length = 215
Score = 32.7 bits (73), Expect = 0.30
Identities = 40/129 (31%), Positives = 46/129 (35%), Gaps = 28/129 (21%)
Query: 82 GGRGCGGAGTWGWKAASSLTRGEPRTIGSPEAGFPPASSRSSEWKRCPRSFSSKELSECR 141
G RGCGG G W TR P SPE G P R +E R
Sbjct: 7 GWRGCGGLGGRTW-----ATRPLPGP-HSPEFGLPGWRVRRGR----------REAQGAR 50
Query: 142 WAMLGGCGAHMRRGAEGRRGGALAVQLPAPGPVLSCNRFAPAAARSGPGRLLRFLRGLAG 201
W GG A + RR A P GPV +C A AA G+ + +AG
Sbjct: 51 WP--GGGAALLAGRLRPRRRWA-----PGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAG 103
Query: 202 GRRLRPRRW 210
P RW
Sbjct: 104 -----PLRW 107
>gi|24430192 keratin 16 [Homo sapiens]
Length = 473
Score = 32.7 bits (73), Expect = 0.30
Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 26/97 (26%)
Query: 7 STSMSSREKLGAGRSLGSRRAASLLSTAAPKLWWRAGVFALLATARLLGISCWVPSLRAA 66
S+SM +G G GS R +S+L+ G SC PS
Sbjct: 11 SSSMKGSCGIGGGIGGGSSRISSVLA----------------------GGSCRAPSTYGG 48
Query: 67 GLSVLRTMGHGSSCPGGRGCGGAGTWGWKAASSLTRG 103
GLSV G +C G G GG G+ ++SS G
Sbjct: 49 GLSVSSRFSSGGACGLGGGYGG----GFSSSSSFGSG 81
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.133 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,547,294
Number of Sequences: 37866
Number of extensions: 616484
Number of successful extensions: 2825
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 160
Number of HSP's that attempted gapping in prelim test: 2737
Number of HSP's gapped (non-prelim): 263
length of query: 247
length of database: 18,247,518
effective HSP length: 100
effective length of query: 147
effective length of database: 14,460,918
effective search space: 2125754946
effective search space used: 2125754946
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.