Guide to the Human Genome
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Name: LOC100290676 Sequence: fasta or formatted (127aa) NCBI GI: 239752630
Description:

PREDICTED: hypothetical protein XP_002347769

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.5         21           3
 C cysteine            2.4          3           1
 D aspartate           3.9          5           1
 E glutamate           3.9          5           1
 F phenylalanine       0.8          1           1
 G glycine            12.6         16           2
 H histidine           4.7          6           1
 I isoleucine          1.6          2           1
 K lysine              1.6          2           1
 L leucine             9.4         12           3
 M methionine          1.6          2           1
 N asparagine          0.8          1           1
 P proline             6.3          8           1
 Q glutamine           1.6          2           1
 R arginine            5.5          7           1
 S serine             10.2         13           1
 T threonine           5.5          7           1
 V valine              6.3          8           1
 W tryptophan          3.9          5           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347769 
ESPN                  0.556   espin 
ESPNL                 0.295   espin-like 
TNKS2                 0.116   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
ANKRD29               0.112   ankyrin repeat domain 29 
TNKS                  0.108   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
FEM1A                 0.104   fem-1 homolog a 
RIPK4                 0.104   ankyrin repeat domain 3 
GABPB1                0.104   GA binding protein transcription factor, beta subunit...
GABPB1                0.104   GA binding protein transcription factor, beta subunit...
GABPB1                0.104   GA binding protein transcription factor, beta subuni...
GABPB1                0.104   GA binding protein transcription factor, beta subunit...
GABPB1                0.104   GA binding protein transcription factor, beta subunit...
ANKRD50               0.100   ankyrin repeat domain 50 
LOC441869             0.095   hypothetical protein LOC441869 
ANKRD44               0.095   ankyrin repeat domain 44 
FEM1C                 0.091   feminization 1 homolog a 
ANK3                  0.091   ankyrin 3 isoform 1 
TRPA1                 0.087   ankyrin-like protein 1 
ANKRD23               0.087   diabetes related ankyrin repeat protein 
BCOR                  0.087   BCL-6 interacting corepressor isoform a 
ANKRD27               0.087   ankyrin repeat domain 27 (VPS9 domain) 
BCOR                  0.087   BCL-6 interacting corepressor isoform c 
BCOR                  0.087   BCL-6 interacting corepressor isoform b 
BCOR                  0.087   BCL-6 interacting corepressor isoform a 
RAI14                 0.083   retinoic acid induced 14 isoform d 
RAI14                 0.083   retinoic acid induced 14 isoform c 
RAI14                 0.083   retinoic acid induced 14 isoform b 
RAI14                 0.083   retinoic acid induced 14 isoform a 
RAI14                 0.083   retinoic acid induced 14 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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