Search of human proteins with 239752620

Search of human proteins with 239752620

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239752620 PREDICTED: similar to heterogeneous nuclear
ribonucleoprotein C-like [Homo sapiens]
         (293 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239758162 PREDICTED: heterogeneous nuclear ribonucleoprotein ...   582   e-166
gi|239752620 PREDICTED: similar to heterogeneous nuclear ribonuc...   582   e-166
gi|226052117 heterogeneous nuclear ribonucleoprotein C-like [Hom...   582   e-166
gi|61966711 heterogeneous nuclear ribonucleoprotein C-like 1 [Ho...   537   e-153
gi|211971067 heterogeneous nuclear ribonucleoprotein C-like [Hom...   529   e-150
gi|117190254 heterogeneous nuclear ribonucleoprotein C isoform b...   510   e-145
gi|117190174 heterogeneous nuclear ribonucleoprotein C isoform b...   510   e-145
gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a...   501   e-142
gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a...   501   e-142
gi|154240738 RALY RNA binding protein-like isoform 2 [Homo sapiens]   237   1e-62
gi|154240740 RALY RNA binding protein-like isoform 2 [Homo sapiens]   237   1e-62
gi|154240712 RALY RNA binding protein-like isoform 2 [Homo sapiens]   237   1e-62
gi|154240692 RALY RNA binding protein-like isoform 1 [Homo sapiens]   237   1e-62
gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated ...   201   8e-52
gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated...   185   5e-47
gi|5454064 RNA binding motif protein 14 [Homo sapiens]                 53   3e-07
gi|239752336 PREDICTED: similar to RNA binding motif protein, X-...    50   2e-06
gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo ...    50   2e-06
gi|86991440 splicing factor, arginine/serine-rich 5 [Homo sapiens]     50   2e-06
gi|86991438 splicing factor, arginine/serine-rich 5 [Homo sapiens]     50   2e-06
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]     50   3e-06
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot...    49   7e-06
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]         48   9e-06
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa...    48   1e-05
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap...    48   1e-05
gi|4557509 cylicin 2 [Homo sapiens]                                    47   2e-05
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3...    45   6e-05
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1...    45   6e-05
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4...    45   6e-05
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [...    45   6e-05

>gi|239758162 PREDICTED: heterogeneous nuclear ribonucleoprotein
           C-like [Homo sapiens]
          Length = 293

 Score =  582 bits (1500), Expect = e-166
 Identities = 293/293 (100%), Positives = 293/293 (100%)

Query: 1   MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
           MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
Sbjct: 1   MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60

Query: 61  KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYY 120
           KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYY
Sbjct: 61  KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYY 120

Query: 121 GGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
           GGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL
Sbjct: 121 GGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180

Query: 181 QAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMES 240
           QAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMES
Sbjct: 181 QAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMES 240

Query: 241 EGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS 293
           EGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS
Sbjct: 241 EGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS 293


>gi|239752620 PREDICTED: similar to heterogeneous nuclear
           ribonucleoprotein C-like [Homo sapiens]
          Length = 293

 Score =  582 bits (1500), Expect = e-166
 Identities = 293/293 (100%), Positives = 293/293 (100%)

Query: 1   MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
           MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
Sbjct: 1   MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60

Query: 61  KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYY 120
           KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYY
Sbjct: 61  KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYY 120

Query: 121 GGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
           GGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL
Sbjct: 121 GGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180

Query: 181 QAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMES 240
           QAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMES
Sbjct: 181 QAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMES 240

Query: 241 EGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS 293
           EGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS
Sbjct: 241 EGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS 293


>gi|226052117 heterogeneous nuclear ribonucleoprotein C-like [Homo
           sapiens]
          Length = 293

 Score =  582 bits (1500), Expect = e-166
 Identities = 293/293 (100%), Positives = 293/293 (100%)

Query: 1   MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
           MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
Sbjct: 1   MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60

Query: 61  KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYY 120
           KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYY
Sbjct: 61  KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYY 120

Query: 121 GGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
           GGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL
Sbjct: 121 GGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180

Query: 181 QAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMES 240
           QAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMES
Sbjct: 181 QAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMES 240

Query: 241 EGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS 293
           EGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS
Sbjct: 241 EGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS 293


>gi|61966711 heterogeneous nuclear ribonucleoprotein C-like 1 [Homo
           sapiens]
          Length = 293

 Score =  537 bits (1383), Expect = e-153
 Identities = 274/293 (93%), Positives = 279/293 (95%)

Query: 1   MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
           MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
Sbjct: 1   MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60

Query: 61  KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYY 120
           KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDY  QRDYY
Sbjct: 61  KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY 120

Query: 121 GGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
            GMYSFPARVPPPPPIALAVVPSKRQR+SGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL
Sbjct: 121 DGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180

Query: 181 QAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMES 240
           QAIKQELTQIKQKVDSLLENLEKIEKE  KQ VEVKNAKSEEEQ+SSS KKD+THVKMES
Sbjct: 181 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES 240

Query: 241 EGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS 293
           EGGA+DS EEGD L DD NEDQGD+QLELIKDDEK AEEGEDDRD  NGQDDS
Sbjct: 241 EGGAEDSAEEGDPLDDDVNEDQGDDQLELIKDDEKEAEEGEDDRDSTNGQDDS 293


>gi|211971067 heterogeneous nuclear ribonucleoprotein C-like [Homo
           sapiens]
          Length = 293

 Score =  529 bits (1363), Expect = e-150
 Identities = 270/293 (92%), Positives = 277/293 (94%)

Query: 1   MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
           MASNVTNKMDPHS+NSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE
Sbjct: 1   MASNVTNKMDPHSVNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60

Query: 61  KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYY 120
           KNARAAVAGEDGRMIASQV  INLAAEPKVNRGNAGVKRSAAEMYGSSFDLDY  QRDYY
Sbjct: 61  KNARAAVAGEDGRMIASQVAVINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYGFQRDYY 120

Query: 121 GGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
            GMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL
Sbjct: 121 DGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180

Query: 181 QAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMES 240
           QAIKQELTQIKQKVDSLLENLEKIEKE  KQ VEVKNAKSEEEQ+SSS KKD+THVKMES
Sbjct: 181 QAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEEQSSSSMKKDETHVKMES 240

Query: 241 EGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS 293
           EGGA+DS EEGD L DDDNEDQGDNQL LIK++EK AEEGED+RD  NGQDDS
Sbjct: 241 EGGAEDSAEEGDPLDDDDNEDQGDNQLHLIKNNEKDAEEGEDNRDSTNGQDDS 293


>gi|117190254 heterogeneous nuclear ribonucleoprotein C isoform b
           [Homo sapiens]
          Length = 293

 Score =  510 bits (1314), Expect = e-145
 Identities = 259/293 (88%), Positives = 273/293 (93%)

Query: 1   MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
           MASNVTNK DP SMNSRVFIGNLNTLVVKKSDVEAIFSKYGKI GCSVHKGFAFVQY  E
Sbjct: 1   MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60

Query: 61  KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYY 120
           +NARAAVAGEDGRMIA QV+DINLAAEPKVNRG AGVKRSAAEMYGSSFDLDY+ QRDYY
Sbjct: 61  RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYY 120

Query: 121 GGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
             MYS+PARVPPPPPIA AVVPSKRQR+SGNTSRRGKSGFNSKSG+RGSSKSGKLKGDDL
Sbjct: 121 DRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDL 180

Query: 181 QAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMES 240
           QAIK+ELTQIKQKVDSLLENLEKIEKE  KQ VE+KN KSEEEQ+SSS KKD+T+VKMES
Sbjct: 181 QAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMES 240

Query: 241 EGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS 293
           EGGADDS EEGDLL DDDNED+GD+QLELIKDDEK AEEGEDDRD ANG+DDS
Sbjct: 241 EGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSANGEDDS 293


>gi|117190174 heterogeneous nuclear ribonucleoprotein C isoform b
           [Homo sapiens]
          Length = 293

 Score =  510 bits (1314), Expect = e-145
 Identities = 259/293 (88%), Positives = 273/293 (93%)

Query: 1   MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
           MASNVTNK DP SMNSRVFIGNLNTLVVKKSDVEAIFSKYGKI GCSVHKGFAFVQY  E
Sbjct: 1   MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60

Query: 61  KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYY 120
           +NARAAVAGEDGRMIA QV+DINLAAEPKVNRG AGVKRSAAEMYGSSFDLDY+ QRDYY
Sbjct: 61  RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSSFDLDYDFQRDYY 120

Query: 121 GGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDL 180
             MYS+PARVPPPPPIA AVVPSKRQR+SGNTSRRGKSGFNSKSG+RGSSKSGKLKGDDL
Sbjct: 121 DRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSKSGKLKGDDL 180

Query: 181 QAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMES 240
           QAIK+ELTQIKQKVDSLLENLEKIEKE  KQ VE+KN KSEEEQ+SSS KKD+T+VKMES
Sbjct: 181 QAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSSSVKKDETNVKMES 240

Query: 241 EGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS 293
           EGGADDS EEGDLL DDDNED+GD+QLELIKDDEK AEEGEDDRD ANG+DDS
Sbjct: 241 EGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSANGEDDS 293


>gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a
           [Homo sapiens]
          Length = 306

 Score =  501 bits (1290), Expect = e-142
 Identities = 259/306 (84%), Positives = 273/306 (89%), Gaps = 13/306 (4%)

Query: 1   MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
           MASNVTNK DP SMNSRVFIGNLNTLVVKKSDVEAIFSKYGKI GCSVHKGFAFVQY  E
Sbjct: 1   MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60

Query: 61  KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGS------------- 107
           +NARAAVAGEDGRMIA QV+DINLAAEPKVNRG AGVKRSAAEMYGS             
Sbjct: 61  RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS 120

Query: 108 SFDLDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKR 167
           SFDLDY+ QRDYY  MYS+PARVPPPPPIA AVVPSKRQR+SGNTSRRGKSGFNSKSG+R
Sbjct: 121 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR 180

Query: 168 GSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSS 227
           GSSKSGKLKGDDLQAIK+ELTQIKQKVDSLLENLEKIEKE  KQ VE+KN KSEEEQ+SS
Sbjct: 181 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS 240

Query: 228 SSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRA 287
           S KKD+T+VKMESEGGADDS EEGDLL DDDNED+GD+QLELIKDDEK AEEGEDDRD A
Sbjct: 241 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA 300

Query: 288 NGQDDS 293
           NG+DDS
Sbjct: 301 NGEDDS 306


>gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a
           [Homo sapiens]
          Length = 306

 Score =  501 bits (1290), Expect = e-142
 Identities = 259/306 (84%), Positives = 273/306 (89%), Gaps = 13/306 (4%)

Query: 1   MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKE 60
           MASNVTNK DP SMNSRVFIGNLNTLVVKKSDVEAIFSKYGKI GCSVHKGFAFVQY  E
Sbjct: 1   MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE 60

Query: 61  KNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGS------------- 107
           +NARAAVAGEDGRMIA QV+DINLAAEPKVNRG AGVKRSAAEMYGS             
Sbjct: 61  RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS 120

Query: 108 SFDLDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKR 167
           SFDLDY+ QRDYY  MYS+PARVPPPPPIA AVVPSKRQR+SGNTSRRGKSGFNSKSG+R
Sbjct: 121 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR 180

Query: 168 GSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSS 227
           GSSKSGKLKGDDLQAIK+ELTQIKQKVDSLLENLEKIEKE  KQ VE+KN KSEEEQ+SS
Sbjct: 181 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS 240

Query: 228 SSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRA 287
           S KKD+T+VKMESEGGADDS EEGDLL DDDNED+GD+QLELIKDDEK AEEGEDDRD A
Sbjct: 241 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA 300

Query: 288 NGQDDS 293
           NG+DDS
Sbjct: 301 NGEDDS 306


>gi|154240738 RALY RNA binding protein-like isoform 2 [Homo sapiens]
          Length = 291

 Score =  237 bits (604), Expect = 1e-62
 Identities = 141/286 (49%), Positives = 179/286 (62%), Gaps = 24/286 (8%)

Query: 3   SNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62
           SNVTNK DP S+NSRVFIGNLNT +VKK D+EAIFSKYGKI GCSVHKG+AFVQY  E++
Sbjct: 8   SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67

Query: 63  ARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY------------GSSFD 110
           ARAAVAGE+ R+IA Q +DIN+A EPK  R   G KR  + +Y            G  FD
Sbjct: 68  ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 127

Query: 111 LDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGS- 169
            DY  + D+Y  ++ +  RVPPPP    AV+P KR R++  T+RRGK  F+ K G R + 
Sbjct: 128 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 183

Query: 170 --SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEE---- 223
             S   KLK D+LQ IK+ELTQIK K+DSLL  LEKIEK+  K   E +  + EE     
Sbjct: 184 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQLEESLVLI 242

Query: 224 QTSSSSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLEL 269
           Q    S+      +  +EGG D   EE     ++D ++ G ++L L
Sbjct: 243 QEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFL 288


>gi|154240740 RALY RNA binding protein-like isoform 2 [Homo sapiens]
          Length = 291

 Score =  237 bits (604), Expect = 1e-62
 Identities = 141/286 (49%), Positives = 179/286 (62%), Gaps = 24/286 (8%)

Query: 3   SNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62
           SNVTNK DP S+NSRVFIGNLNT +VKK D+EAIFSKYGKI GCSVHKG+AFVQY  E++
Sbjct: 8   SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67

Query: 63  ARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY------------GSSFD 110
           ARAAVAGE+ R+IA Q +DIN+A EPK  R   G KR  + +Y            G  FD
Sbjct: 68  ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 127

Query: 111 LDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGS- 169
            DY  + D+Y  ++ +  RVPPPP    AV+P KR R++  T+RRGK  F+ K G R + 
Sbjct: 128 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 183

Query: 170 --SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEE---- 223
             S   KLK D+LQ IK+ELTQIK K+DSLL  LEKIEK+  K   E +  + EE     
Sbjct: 184 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQLEESLVLI 242

Query: 224 QTSSSSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLEL 269
           Q    S+      +  +EGG D   EE     ++D ++ G ++L L
Sbjct: 243 QEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFL 288


>gi|154240712 RALY RNA binding protein-like isoform 2 [Homo sapiens]
          Length = 291

 Score =  237 bits (604), Expect = 1e-62
 Identities = 141/286 (49%), Positives = 179/286 (62%), Gaps = 24/286 (8%)

Query: 3   SNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62
           SNVTNK DP S+NSRVFIGNLNT +VKK D+EAIFSKYGKI GCSVHKG+AFVQY  E++
Sbjct: 8   SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 67

Query: 63  ARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY------------GSSFD 110
           ARAAVAGE+ R+IA Q +DIN+A EPK  R   G KR  + +Y            G  FD
Sbjct: 68  ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 127

Query: 111 LDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGS- 169
            DY  + D+Y  ++ +  RVPPPP    AV+P KR R++  T+RRGK  F+ K G R + 
Sbjct: 128 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 183

Query: 170 --SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEE---- 223
             S   KLK D+LQ IK+ELTQIK K+DSLL  LEKIEK+  K   E +  + EE     
Sbjct: 184 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQLEESLVLI 242

Query: 224 QTSSSSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLEL 269
           Q    S+      +  +EGG D   EE     ++D ++ G ++L L
Sbjct: 243 QEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFL 288


>gi|154240692 RALY RNA binding protein-like isoform 1 [Homo sapiens]
          Length = 304

 Score =  237 bits (604), Expect = 1e-62
 Identities = 141/286 (49%), Positives = 179/286 (62%), Gaps = 24/286 (8%)

Query: 3   SNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62
           SNVTNK DP S+NSRVFIGNLNT +VKK D+EAIFSKYGKI GCSVHKG+AFVQY  E++
Sbjct: 21  SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 80

Query: 63  ARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY------------GSSFD 110
           ARAAVAGE+ R+IA Q +DIN+A EPK  R   G KR  + +Y            G  FD
Sbjct: 81  ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 140

Query: 111 LDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGS- 169
            DY  + D+Y  ++ +  RVPPPP    AV+P KR R++  T+RRGK  F+ K G R + 
Sbjct: 141 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 196

Query: 170 --SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEE---- 223
             S   KLK D+LQ IK+ELTQIK K+DSLL  LEKIEK+  K   E +  + EE     
Sbjct: 197 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQLEESLVLI 255

Query: 224 QTSSSSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLEL 269
           Q    S+      +  +EGG D   EE     ++D ++ G ++L L
Sbjct: 256 QEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFL 301


>gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated
           with lethal yellow) long isoform [Homo sapiens]
          Length = 306

 Score =  201 bits (510), Expect = 8e-52
 Identities = 114/212 (53%), Positives = 145/212 (68%), Gaps = 10/212 (4%)

Query: 2   ASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEK 61
           ASNVTNK DP S+NSRVFIGNLNT +VKKSDVE IFSKYG++AGCSVHKG+AFVQY  E+
Sbjct: 7   ASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNER 66

Query: 62  NARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY-GSSFDLDYNLQRDYY 120
           +ARAAV GE+GR++A Q +DIN+A EPK +R   G+KR+A+ +Y G  FD DY  + D+Y
Sbjct: 67  HARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIYSGYIFDYDY-YRDDFY 124

Query: 121 GGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSG-----FNSKSGKRGSSKSGKL 175
             ++ +  R+ P P      VP KR R++    RR K+      F   +    SS   KL
Sbjct: 125 DRLFDYRGRLSPVP--VPRAVPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKIKL 182

Query: 176 KGDDLQAIKQELTQIKQKVDSLLENLEKIEKE 207
           K  +LQAIK ELTQIK  +D+LL  LE+I  E
Sbjct: 183 KSSELQAIKTELTQIKSNIDALLSRLEQIAAE 214


>gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated
           with lethal yellow) short isoform [Homo sapiens]
          Length = 290

 Score =  185 bits (469), Expect = 5e-47
 Identities = 113/211 (53%), Positives = 138/211 (65%), Gaps = 24/211 (11%)

Query: 2   ASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEK 61
           ASNVTNK DP S+NSRVFIGNLNT +VKKSDVE IFSKYG++AGCSVHKG+AFVQY  E+
Sbjct: 7   ASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNER 66

Query: 62  NARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYYG 121
           +ARAAV GE+GR++A Q +DIN+A EPK +R   G+KR+A+ +Y   FD         Y 
Sbjct: 67  HARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY-RLFD---------YR 115

Query: 122 GMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSG-----FNSKSGKRGSSKSGKLK 176
           G  S     P P P A   VP KR R++    RR K+      F   +    SS   KLK
Sbjct: 116 GRLS-----PVPVPRA---VPVKRPRVTVPLVRRVKTNVPVKLFARSTAVTTSSAKIKLK 167

Query: 177 GDDLQAIKQELTQIKQKVDSLLENLEKIEKE 207
             +LQAIK ELTQIK  +D+LL  LE+I  E
Sbjct: 168 SSELQAIKTELTQIKSNIDALLSRLEQIAAE 198


>gi|5454064 RNA binding motif protein 14 [Homo sapiens]
          Length = 669

 Score = 53.1 bits (126), Expect = 3e-07
 Identities = 35/137 (25%), Positives = 68/137 (49%), Gaps = 14/137 (10%)

Query: 11  PHSMNS-RVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAG 69
           P  +N+ ++F+GN++     + ++ ++F + G++  C V K +AFV  +KE +A+AA+A 
Sbjct: 73  PRPLNTWKIFVGNVSAACTSQ-ELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQ 131

Query: 70  EDGRMIASQVVDINLAAEPK-------VNRGNAGVKRSAAEMY-----GSSFDLDYNLQR 117
            +G+ +  + +++ L+ + +       V  G+   K  A +       G S   DY    
Sbjct: 132 LNGKEVKGKRINVELSTKGQKKGPGLAVQSGDKTKKPGAGDTAFPGTGGFSATFDYQQAF 191

Query: 118 DYYGGMYSFPARVPPPP 134
               G +   AR P PP
Sbjct: 192 GNSTGGFDGQARQPTPP 208



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 17/56 (30%), Positives = 30/56 (53%)

Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDG 72
          ++F+GN++       ++ A+F+ YG +  C+V K FAFV   +   A  A+    G
Sbjct: 2  KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHG 57


>gi|239752336 PREDICTED: similar to RNA binding motif protein,
          X-linked [Homo sapiens]
          Length = 138

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 9/88 (10%)

Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIA------GCSVHK--GFAFVQYDKEKNARAAVA 68
          + FIG LNT   KK+ +EA+F KYG+I        C  +K  GFAF+ +++  +A+ A  
Sbjct: 9  KFFIGGLNTETNKKA-LEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAAR 67

Query: 69 GEDGRMIASQVVDINLAAEPKVNRGNAG 96
            +G+ +  + + +  A +P    G  G
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFESGRRG 95


>gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo
          sapiens]
          Length = 138

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 9/88 (10%)

Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIA------GCSVHK--GFAFVQYDKEKNARAAVA 68
          + FIG LNT   KK+ +EA+F KYG+I        C  +K  GFAF+ +++  +A+ A  
Sbjct: 9  KFFIGGLNTETNKKA-LEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAAR 67

Query: 69 GEDGRMIASQVVDINLAAEPKVNRGNAG 96
            +G+ +  + + +  A +P    G  G
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFESGRRG 95


>gi|86991440 splicing factor, arginine/serine-rich 5 [Homo
          sapiens]
          Length = 272

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIA 76
          RVFIG LN    ++ DVE  F  YG+I    + +GF FV+++  ++A  AV   DG+ + 
Sbjct: 5  RVFIGRLNP-AAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELC 63

Query: 77 SQVVDINLA-AEPKVNRG 93
          S+ V I  A A  +  RG
Sbjct: 64 SERVTIEHARARSRGGRG 81


>gi|86991438 splicing factor, arginine/serine-rich 5 [Homo
          sapiens]
          Length = 272

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIA 76
          RVFIG LN    ++ DVE  F  YG+I    + +GF FV+++  ++A  AV   DG+ + 
Sbjct: 5  RVFIGRLNP-AAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELC 63

Query: 77 SQVVDINLA-AEPKVNRG 93
          S+ V I  A A  +  RG
Sbjct: 64 SERVTIEHARARSRGGRG 81


>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
          Length = 494

 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 7/105 (6%)

Query: 17  RVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIA 76
           RV+IG L+    ++ DVE  F  YGKI    +  G+ FV++D  ++A  AV   +G+ + 
Sbjct: 3   RVYIGRLS-YQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLC 61

Query: 77  SQVVDINLAAEPK------VNRGNAGVKRSAAEMYGSSFDLDYNL 115
            + V +  A  P+        R   G +RS  + YG     +Y L
Sbjct: 62  GERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRL 106


>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
           G-T [Homo sapiens]
          Length = 392

 Score = 48.5 bits (114), Expect = 7e-06
 Identities = 47/184 (25%), Positives = 71/184 (38%), Gaps = 40/184 (21%)

Query: 17  RVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHK--------GFAFVQYDKEKNARAAVA 68
           ++FIG LN    +K+ +EA F KYG+I    + K        GFAFV ++   +A+AA  
Sbjct: 9   KLFIGGLNLETDEKA-LEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAAR 67

Query: 69  GEDGRMIASQVVDINLAAEP---------------------KVNRGNAGVKRSAAEMYGS 107
             +G+ +  + + +  A +P                     +  RG  G  R +    G 
Sbjct: 68  DMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGRPRFLRGTRGGGGGPRRSPSRGGP 127

Query: 108 SFDLDYNLQRDYYGGMYSFPARVPPPP----PIALAVVPSKRQRISGNTSR------RGK 157
             D  Y    D        P +  PPP    P      PS   R SG   R      RG+
Sbjct: 128 DDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARSSGGGMRGRALAVRGR 187

Query: 158 SGFN 161
            G++
Sbjct: 188 DGYS 191


>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
          Length = 391

 Score = 48.1 bits (113), Expect = 9e-06
 Identities = 44/178 (24%), Positives = 71/178 (39%), Gaps = 35/178 (19%)

Query: 17  RVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHK--------GFAFVQYDKEKNARAAVA 68
           ++FIG LNT   +K+ +EA+F KYG+I    + K        GFAFV ++   +A+ A  
Sbjct: 9   KLFIGGLNTETNEKA-LEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67

Query: 69  GEDGRMIASQVVDINLAAEP----------------------KVNRGNAGVKRSAAEMYG 106
             +G+ +  + + +  A +P                      +  RG +G  R      G
Sbjct: 68  DMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTRGPPSRGG 127

Query: 107 SSFDLDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKS 164
              D  Y++  +        P +  PPP       P KR   SG    R  SG   ++
Sbjct: 128 HMDDGGYSMNFNMSSSRGPLPVKRGPPP--RSGGPPPKRSAPSGPV--RSSSGMGGRA 181


>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
          sapiens]
          Length = 390

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 9/88 (10%)

Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHK--------GFAFVQYDKEKNARAAVA 68
          ++FIG LNT   +K+ +E +F KYG+I    + K        GFAFV ++   +A+ A  
Sbjct: 9  KLFIGGLNTETNEKA-LETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67

Query: 69 GEDGRMIASQVVDINLAAEPKVNRGNAG 96
            +G+ +  + + +  A +P   RG  G
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFERGRHG 95


>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
          sapiens]
          Length = 390

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 9/88 (10%)

Query: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHK--------GFAFVQYDKEKNARAAVA 68
          ++FIG LNT   +K+ +E +F KYG+I    + K        GFAFV ++   +A+ A  
Sbjct: 9  KLFIGGLNTETNEKA-LETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67

Query: 69 GEDGRMIASQVVDINLAAEPKVNRGNAG 96
            +G+ +  + + +  A +P   RG  G
Sbjct: 68 DMNGKSLDGKAIKVEQATKPSFERGRHG 95


>gi|4557509 cylicin 2 [Homo sapiens]
          Length = 348

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 25/179 (13%)

Query: 128 ARVPPPPPIALAVVPSKRQRIS--GNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQ 185
           AR  P  P     V SK   I   G      K   +S+S  +   K  K KG D++  K+
Sbjct: 94  ARRQPLKPTRTVEVDSKAAEIGKKGEDKTTQKDTTDSESELKQGKKDSK-KGKDIEKGKE 152

Query: 186 ELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMESEGGAD 245
           E      K+D+     +K  K+  K   + K++ +E E     +KKD    K +S  G D
Sbjct: 153 E------KLDA-----KKDSKKGKKDAEKGKDSATESEDEKGGAKKDNKKDKKDSNKGKD 201

Query: 246 DSVE-EGDLLCDDDNEDQGDN----------QLELIKDDEKGAEEGEDDRDRANGQDDS 293
            + E EG+    + +  +G            +L+ +K DEK  E+G+ D ++ +   D+
Sbjct: 202 SATESEGEKGGTEKDSKKGKKDSKKGKDSAIELQAVKADEKKDEDGKKDANKGDESKDA 260



 Score = 39.7 bits (91), Expect = 0.003
 Identities = 34/145 (23%), Positives = 65/145 (44%), Gaps = 10/145 (6%)

Query: 153 SRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQG 212
           S++GK     K  K  + K  K    D +  K   T+ + +     ++ +K +K+  K  
Sbjct: 141 SKKGKDIEKGKEEKLDAKKDSKKGKKDAEKGKDSATESEDEKGGAKKDNKKDKKDSNKGK 200

Query: 213 VEVKNAKSEEEQTSSSSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGD---NQLEL 269
                ++ E+  T   SKK     K +S+ G D ++E   +  D+  ++ G    N+ + 
Sbjct: 201 DSATESEGEKGGTEKDSKKG----KKDSKKGKDSAIELQAVKADEKKDEDGKKDANKGDE 256

Query: 270 IKDDEKGAEE---GEDDRDRANGQD 291
            KD +K A+E   G+ D+ + +  D
Sbjct: 257 SKDAKKDAKEIKKGKKDKKKPSSTD 281


>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
           [Homo sapiens]
          Length = 535

 Score = 45.4 bits (106), Expect = 6e-05
 Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 13/116 (11%)

Query: 18  VFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIAS 77
           +F+ NL T V ++  +E  FS++GK+      K +AFV ++    A  A+   +G+ I  
Sbjct: 245 LFVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 303

Query: 78  QVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYYGGMYSFPARVPPP 133
           + ++I LA  P   R      R A+               DYY   Y  P R+PPP
Sbjct: 304 EEIEIVLAKPPDKKRKERQAARQASRS---------TAYEDYY---YHPPPRMPPP 347


>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
           [Homo sapiens]
          Length = 636

 Score = 45.4 bits (106), Expect = 6e-05
 Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 13/116 (11%)

Query: 18  VFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIAS 77
           +F+ NL T V ++  +E  FS++GK+      K +AFV ++    A  A+   +G+ I  
Sbjct: 346 LFVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 404

Query: 78  QVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYYGGMYSFPARVPPP 133
           + ++I LA  P   R      R A+               DYY   Y  P R+PPP
Sbjct: 405 EEIEIVLAKPPDKKRKERQAARQASRS---------TAYEDYY---YHPPPRMPPP 448


>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
           [Homo sapiens]
          Length = 532

 Score = 45.4 bits (106), Expect = 6e-05
 Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 13/116 (11%)

Query: 18  VFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIAS 77
           +F+ NL T V ++  +E  FS++GK+      K +AFV ++    A  A+   +G+ I  
Sbjct: 242 LFVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 300

Query: 78  QVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYYGGMYSFPARVPPP 133
           + ++I LA  P   R      R A+               DYY   Y  P R+PPP
Sbjct: 301 EEIEIVLAKPPDKKRKERQAARQASRS---------TAYEDYY---YHPPPRMPPP 344


>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
           [Homo sapiens]
          Length = 633

 Score = 45.4 bits (106), Expect = 6e-05
 Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 13/116 (11%)

Query: 18  VFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIAS 77
           +F+ NL T V ++  +E  FS++GK+      K +AFV ++    A  A+   +G+ I  
Sbjct: 343 LFVRNLATTVTEEI-LEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 401

Query: 78  QVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYYGGMYSFPARVPPP 133
           + ++I LA  P   R      R A+               DYY   Y  P R+PPP
Sbjct: 402 EEIEIVLAKPPDKKRKERQAARQASRS---------TAYEDYY---YHPPPRMPPP 445


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.307    0.128    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,307,837
Number of Sequences: 37866
Number of extensions: 538115
Number of successful extensions: 6287
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 542
Number of HSP's that attempted gapping in prelim test: 4422
Number of HSP's gapped (non-prelim): 1930
length of query: 293
length of database: 18,247,518
effective HSP length: 101
effective length of query: 192
effective length of database: 14,423,052
effective search space: 2769225984
effective search space used: 2769225984
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.