BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239751982 PREDICTED: hypothetical protein XP_002348093 [Homo sapiens] (104 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239757476 PREDICTED: hypothetical protein [Homo sapiens] 214 9e-57 gi|239751982 PREDICTED: hypothetical protein XP_002348093 [Homo ... 214 9e-57 gi|239746469 PREDICTED: hypothetical protein XP_002343770 [Homo ... 214 9e-57 gi|239753314 PREDICTED: similar to RIKEN cDNA C230030N03 [Homo s... 30 0.31 gi|55770852 glutamate receptor, ionotropic, delta 1 precursor [H... 28 1.2 gi|41352718 deltex homolog 1 [Homo sapiens] 28 1.2 gi|239757751 PREDICTED: hypothetical protein [Homo sapiens] 28 1.5 gi|239756041 PREDICTED: hypothetical protein XP_002344790 [Homo ... 28 2.0 gi|239752261 PREDICTED: hypothetical protein XP_002348184 [Homo ... 28 2.0 gi|239746774 PREDICTED: hypothetical protein XP_002343845 [Homo ... 28 2.0 gi|239752764 PREDICTED: hypothetical protein [Homo sapiens] 27 3.4 gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo ... 27 3.4 gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo ... 27 3.4 gi|145309320 forkhead box Q1 [Homo sapiens] 26 5.9 gi|115430235 ubiquitin-like with PHD and ring finger domains 1 i... 26 5.9 gi|115430233 ubiquitin-like with PHD and ring finger domains 1 i... 26 5.9 gi|20162568 melanoma antigen family C, 3 isoform 1 [Homo sapiens] 26 5.9 gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo sa... 26 5.9 gi|41152072 zinc finger, DHHC domain containing 5 [Homo sapiens] 26 5.9 gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 26 7.7 gi|61744471 low density lipoprotein receptor-related protein 8 i... 26 7.7 gi|61744467 low density lipoprotein receptor-related protein 8 i... 26 7.7 gi|66082554 low density lipoprotein receptor-related protein 8 i... 26 7.7 gi|65301119 low density lipoprotein receptor-related protein 8 i... 26 7.7 gi|34098976 marapsin 2 [Homo sapiens] 26 7.7 >gi|239757476 PREDICTED: hypothetical protein [Homo sapiens] Length = 104 Score = 214 bits (546), Expect = 9e-57 Identities = 104/104 (100%), Positives = 104/104 (100%) Query: 1 MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVE 60 MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVE Sbjct: 1 MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVE 60 Query: 61 ARSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAPA 104 ARSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAPA Sbjct: 61 ARSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAPA 104 >gi|239751982 PREDICTED: hypothetical protein XP_002348093 [Homo sapiens] Length = 104 Score = 214 bits (546), Expect = 9e-57 Identities = 104/104 (100%), Positives = 104/104 (100%) Query: 1 MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVE 60 MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVE Sbjct: 1 MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVE 60 Query: 61 ARSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAPA 104 ARSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAPA Sbjct: 61 ARSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAPA 104 >gi|239746469 PREDICTED: hypothetical protein XP_002343770 [Homo sapiens] Length = 104 Score = 214 bits (546), Expect = 9e-57 Identities = 104/104 (100%), Positives = 104/104 (100%) Query: 1 MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVE 60 MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVE Sbjct: 1 MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVE 60 Query: 61 ARSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAPA 104 ARSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAPA Sbjct: 61 ARSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAPA 104 >gi|239753314 PREDICTED: similar to RIKEN cDNA C230030N03 [Homo sapiens] Length = 1183 Score = 30.4 bits (67), Expect = 0.31 Identities = 12/33 (36%), Positives = 17/33 (51%) Query: 66 GKWNRAAAALGPSSPGQRLWVQPRGERPCTPTL 98 G + + LGP+ + LW QP + PC P L Sbjct: 266 GTRTKKESTLGPAGDTELLWSQPHSDVPCQPPL 298 >gi|55770852 glutamate receptor, ionotropic, delta 1 precursor [Homo sapiens] Length = 1009 Score = 28.5 bits (62), Expect = 1.2 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 18 AVLPAFSAQLGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVEARSRYGKW 68 AV +AQ P+A+ A L A +++ G +++Q G+S N + R G W Sbjct: 588 AVRAQSAAQPRPSAS-ATLHSAIWIVYGAFVQQGGESSVNSMAMRIVMGSW 637 >gi|41352718 deltex homolog 1 [Homo sapiens] Length = 620 Score = 28.5 bits (62), Expect = 1.2 Identities = 29/99 (29%), Positives = 36/99 (36%), Gaps = 30/99 (30%) Query: 4 LCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVEARS 63 + + ++R PAP LP GP A+AV P ATF W Sbjct: 218 ILASQRRKAPPAP--PLPPPPPPGGPPGALAVRPSATFTGAALW---------------- 259 Query: 64 RYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGA 102 AA A GP+ P P G P +P GGA Sbjct: 260 -------AAPAAGPAEP-----APPPGAPPRSPGAPGGA 286 >gi|239757751 PREDICTED: hypothetical protein [Homo sapiens] Length = 327 Score = 28.1 bits (61), Expect = 1.5 Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 26/78 (33%) Query: 51 NGQSEKNEVEARSRYGK-------------WNRAAA-----------ALGPSSPGQRLWV 86 N + K E+ AR R+ W RA A ALGP + G +L V Sbjct: 66 NTRCLKFEISARGRWAVFHHQPSTPKGRCVWRRAGAGIVRSGPGLHGALGPDTGGAKLRV 125 Query: 87 QPRGERPCTPTL--FGGA 102 +PR P P+L GGA Sbjct: 126 RPRRTPPRDPSLPVLGGA 143 >gi|239756041 PREDICTED: hypothetical protein XP_002344790 [Homo sapiens] Length = 172 Score = 27.7 bits (60), Expect = 2.0 Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 11/77 (14%) Query: 14 PAPLAVLPAFSAQ-LGPAAAVAVLPLATFMILGDWLKQNGQSEKNEVEARSRYGKWNRAA 72 P+PL+VLP AQ + P VAV+ LG ++ G + EA R G+W R Sbjct: 19 PSPLSVLPGVVAQPVRPLGVVAVM----VRELGPLRREGGPAVH---EALHRGGRW-RLL 70 Query: 73 AALGPSSPGQRLWVQPR 89 A GP Q+L+ Q R Sbjct: 71 CARGPVL--QQLYPQHR 85 >gi|239752261 PREDICTED: hypothetical protein XP_002348184 [Homo sapiens] Length = 264 Score = 27.7 bits (60), Expect = 2.0 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 13/48 (27%) Query: 68 WNRAAA-----------ALGPSSPGQRLWVQPRGERPCTPTL--FGGA 102 W RA A ALGP + G +L V+PR P P+L GGA Sbjct: 33 WRRAGAGIVRSGPGLHGALGPDTGGAKLRVRPRRTPPRDPSLPVLGGA 80 >gi|239746774 PREDICTED: hypothetical protein XP_002343845 [Homo sapiens] Length = 264 Score = 27.7 bits (60), Expect = 2.0 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 13/48 (27%) Query: 68 WNRAAA-----------ALGPSSPGQRLWVQPRGERPCTPTL--FGGA 102 W RA A ALGP + G +L V+PR P P+L GGA Sbjct: 33 WRRAGAGIVRSGPGLHGALGPDTGGAKLRVRPRRTPPRDPSLPVLGGA 80 >gi|239752764 PREDICTED: hypothetical protein [Homo sapiens] Length = 370 Score = 26.9 bits (58), Expect = 3.4 Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 2/42 (4%) Query: 62 RSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAP 103 R R G AA G P +R QP G R P GGAP Sbjct: 80 RGRGGLPGAAALGAGAQQPRRRRLAQPPGSR--APLQVGGAP 119 >gi|239747300 PREDICTED: hypothetical protein XP_002346414 [Homo sapiens] Length = 470 Score = 26.9 bits (58), Expect = 3.4 Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 2/42 (4%) Query: 62 RSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAP 103 R R G AA G P +R QP G R P GGAP Sbjct: 80 RGRGGLPGAAALGAGAQQPRRRRLAQPPGSR--APLQVGGAP 119 >gi|239741124 PREDICTED: hypothetical protein XP_002342114 [Homo sapiens] Length = 470 Score = 26.9 bits (58), Expect = 3.4 Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 2/42 (4%) Query: 62 RSRYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGGAP 103 R R G AA G P +R QP G R P GGAP Sbjct: 80 RGRGGLPGAAALGAGAQQPRRRRLAQPPGSR--APLQVGGAP 119 >gi|145309320 forkhead box Q1 [Homo sapiens] Length = 403 Score = 26.2 bits (56), Expect = 5.9 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 8/44 (18%) Query: 6 SDRQRTTSP--------APLAVLPAFSAQLGPAAAVAVLPLATF 41 S R R T+P AP LPAF A L A A+LPL + Sbjct: 283 SRRLRDTAPGTTLQWGAAPCPPLPAFPALLPAAPCRALLPLCAY 326 >gi|115430235 ubiquitin-like with PHD and ring finger domains 1 isoform 1 [Homo sapiens] Length = 793 Score = 26.2 bits (56), Expect = 5.9 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 6/39 (15%) Query: 49 KQNGQSEKNEVEA------RSRYGKWNRAAAALGPSSPG 81 K+N + E+ E + R+ GKW R +A GPS G Sbjct: 622 KENSKREEEEQQEGGFASPRTGKGKWKRKSAGGGPSRAG 660 >gi|115430233 ubiquitin-like with PHD and ring finger domains 1 isoform 2 [Homo sapiens] Length = 806 Score = 26.2 bits (56), Expect = 5.9 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 6/39 (15%) Query: 49 KQNGQSEKNEVEA------RSRYGKWNRAAAALGPSSPG 81 K+N + E+ E + R+ GKW R +A GPS G Sbjct: 635 KENSKREEEEQQEGGFASPRTGKGKWKRKSAGGGPSRAG 673 >gi|20162568 melanoma antigen family C, 3 isoform 1 [Homo sapiens] Length = 643 Score = 26.2 bits (56), Expect = 5.9 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%) Query: 54 SEKNEVEARSRYGKWNRAAA---ALGPSSPGQRLWVQPRGERPCTPTLF 99 +EK + S W R +L SPG+RLW + G P + LF Sbjct: 132 NEKRTLWKDSDLPTWRRGTGYTLSLPAVSPGKRLWGEKAGSLPESEPLF 180 >gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo sapiens] Length = 2113 Score = 26.2 bits (56), Expect = 5.9 Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 32/106 (30%) Query: 28 GPAAAVAVLPLATFMILGDWL---KQNGQSEKNEVEARS--------------------- 63 GP A + +P + ++ WL K NG K + S Sbjct: 1252 GPPAGIKAVPSSASSVVVSWLPPTKPNGVIRKYTIFCSSPGSGQPAPSEYETSPEQLFYR 1311 Query: 64 --------RYGKWNRAAAALGPSSPGQRLWVQPRGERPCTPTLFGG 101 +Y W A + G + +++ ++P G+ P FGG Sbjct: 1312 IAHLNRGQQYLLWVAAVTSAGRGNSSEKVTIEPAGKAPAKIISFGG 1357 >gi|41152072 zinc finger, DHHC domain containing 5 [Homo sapiens] Length = 715 Score = 26.2 bits (56), Expect = 5.9 Identities = 11/26 (42%), Positives = 17/26 (65%) Query: 56 KNEVEARSRYGKWNRAAAALGPSSPG 81 K+EV+ ++ Y K N +LG +SPG Sbjct: 661 KDEVQLKTTYSKSNGQPKSLGSASPG 686 >gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD subunit [Homo sapiens] Length = 551 Score = 25.8 bits (55), Expect = 7.7 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 5/33 (15%) Query: 76 GPSSPGQRL-----WVQPRGERPCTPTLFGGAP 103 GP PGQ L RG+RP P LF G P Sbjct: 251 GPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQP 283 >gi|61744471 low density lipoprotein receptor-related protein 8 isoform 1 precursor [Homo sapiens] Length = 963 Score = 25.8 bits (55), Expect = 7.7 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 10/47 (21%) Query: 1 MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDW 47 +AT+ R+RT FS L A+AV PL FM DW Sbjct: 523 VATVDGGRRRTL----------FSRNLSEPRAIAVDPLRGFMYWSDW 559 >gi|61744467 low density lipoprotein receptor-related protein 8 isoform 3 precursor [Homo sapiens] Length = 700 Score = 25.8 bits (55), Expect = 7.7 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 10/47 (21%) Query: 1 MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDW 47 +AT+ R+RT FS L A+AV PL FM DW Sbjct: 394 VATVDGGRRRTL----------FSRNLSEPRAIAVDPLRGFMYWSDW 430 >gi|66082554 low density lipoprotein receptor-related protein 8 isoform 2 precursor [Homo sapiens] Length = 793 Score = 25.8 bits (55), Expect = 7.7 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 10/47 (21%) Query: 1 MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDW 47 +AT+ R+RT FS L A+AV PL FM DW Sbjct: 353 VATVDGGRRRTL----------FSRNLSEPRAIAVDPLRGFMYWSDW 389 >gi|65301119 low density lipoprotein receptor-related protein 8 isoform 4 precursor [Homo sapiens] Length = 904 Score = 25.8 bits (55), Expect = 7.7 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 10/47 (21%) Query: 1 MATLCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMILGDW 47 +AT+ R+RT FS L A+AV PL FM DW Sbjct: 523 VATVDGGRRRTL----------FSRNLSEPRAIAVDPLRGFMYWSDW 559 >gi|34098976 marapsin 2 [Homo sapiens] Length = 326 Score = 25.8 bits (55), Expect = 7.7 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%) Query: 4 LCSDRQRTTSPAPLAVLPAFSAQLGPAAAVAVLPLATFMIL 44 +C + + T +PA A PA S LGP +V + LA + +L Sbjct: 288 ICDNIEITPTPAQPA--PALSPALGPTLSVLMAMLAGWSVL 326 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.317 0.130 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,790,862 Number of Sequences: 37866 Number of extensions: 202323 Number of successful extensions: 679 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 13 Number of HSP's that attempted gapping in prelim test: 667 Number of HSP's gapped (non-prelim): 25 length of query: 104 length of database: 18,247,518 effective HSP length: 75 effective length of query: 29 effective length of database: 15,407,568 effective search space: 446819472 effective search space used: 446819472 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.