Guide to the Human Genome
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Search of human proteins with 239751946

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239751946 PREDICTED: hypothetical protein XP_002348046 [Homo
sapiens]
         (132 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239751946 PREDICTED: hypothetical protein XP_002348046 [Homo ...   266   5e-72
gi|239746429 PREDICTED: hypothetical protein XP_002344210 [Homo ...   266   5e-72
gi|239757430 PREDICTED: similar to lactation elevated 1 (predict...   265   6e-72
gi|239748549 PREDICTED: hypothetical protein LOC100129791 [Homo ...   136   5e-33
gi|239742533 PREDICTED: hypothetical protein LOC100129791 [Homo ...   136   5e-33
gi|239754018 PREDICTED: hypothetical protein LOC100129791 [Homo ...   134   2e-32
gi|239753730 PREDICTED: hypothetical protein [Homo sapiens]            45   2e-05
gi|239748243 PREDICTED: hypothetical protein XP_002346620 [Homo ...    45   2e-05
gi|239742144 PREDICTED: hypothetical protein XP_002342414 [Homo ...    45   2e-05
gi|14917119 keratin 34 [Homo sapiens]                                  42   1e-04
gi|10337581 type I hair keratin 3B [Homo sapiens]                      42   1e-04
gi|14917115 keratin 31 [Homo sapiens]                                  42   1e-04
gi|14917117 keratin 33A [Homo sapiens]                                 41   2e-04
gi|143770880 laminin, beta 4 [Homo sapiens]                            39   0.001
gi|4504063 golgin 97 [Homo sapiens]                                    37   0.003
gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo sap...    37   0.005
gi|31083099 golgi autoantigen, golgin subfamily a, 8A [Homo sapi...    37   0.005
gi|157694505 LINE-1 type transposase domain containing 1 [Homo s...    37   0.005
gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens]                   35   0.013
gi|55770888 early endosome antigen 1, 162kD [Homo sapiens]             35   0.017
gi|198442844 dynein, axonemal, heavy chain 10 [Homo sapiens]           35   0.022
gi|58535451 CDK5 regulatory subunit associated protein 2 isoform...    35   0.022
gi|148277620 type I hair keratin KA35 [Homo sapiens]                   34   0.029
gi|216548091 leucine zipper protein 1 [Homo sapiens]                   34   0.029
gi|216548085 leucine zipper protein 1 [Homo sapiens]                   34   0.029
gi|34577114 cytomatrix protein p110 [Homo sapiens]                     34   0.038
gi|116488398 keratin 32 [Homo sapiens]                                 33   0.050
gi|239745299 PREDICTED: hypothetical protein [Homo sapiens]            33   0.050
gi|49258196 syntaxin 19 [Homo sapiens]                                 33   0.050
gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo s...    33   0.065

>gi|239751946 PREDICTED: hypothetical protein XP_002348046 [Homo
           sapiens]
          Length = 132

 Score =  266 bits (679), Expect = 5e-72
 Identities = 132/132 (100%), Positives = 132/132 (100%)

Query: 1   MRKNQCKKAENSKNQNASSPPKDHNSSPAREQDWTGNEFDELTEVGFRRWVITNSSKLKE 60
           MRKNQCKKAENSKNQNASSPPKDHNSSPAREQDWTGNEFDELTEVGFRRWVITNSSKLKE
Sbjct: 1   MRKNQCKKAENSKNQNASSPPKDHNSSPAREQDWTGNEFDELTEVGFRRWVITNSSKLKE 60

Query: 61  HVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEER 120
           HVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEER
Sbjct: 61  HVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEER 120

Query: 121 ISEIEDQLNEIK 132
           ISEIEDQLNEIK
Sbjct: 121 ISEIEDQLNEIK 132


>gi|239746429 PREDICTED: hypothetical protein XP_002344210 [Homo
           sapiens]
          Length = 132

 Score =  266 bits (679), Expect = 5e-72
 Identities = 132/132 (100%), Positives = 132/132 (100%)

Query: 1   MRKNQCKKAENSKNQNASSPPKDHNSSPAREQDWTGNEFDELTEVGFRRWVITNSSKLKE 60
           MRKNQCKKAENSKNQNASSPPKDHNSSPAREQDWTGNEFDELTEVGFRRWVITNSSKLKE
Sbjct: 1   MRKNQCKKAENSKNQNASSPPKDHNSSPAREQDWTGNEFDELTEVGFRRWVITNSSKLKE 60

Query: 61  HVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEER 120
           HVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEER
Sbjct: 61  HVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEER 120

Query: 121 ISEIEDQLNEIK 132
           ISEIEDQLNEIK
Sbjct: 121 ISEIEDQLNEIK 132


>gi|239757430 PREDICTED: similar to lactation elevated 1 (predicted)
           [Homo sapiens]
          Length = 132

 Score =  265 bits (678), Expect = 6e-72
 Identities = 131/132 (99%), Positives = 132/132 (100%)

Query: 1   MRKNQCKKAENSKNQNASSPPKDHNSSPAREQDWTGNEFDELTEVGFRRWVITNSSKLKE 60
           MRKNQCKKAENSKNQNASSPPKDHNSSPAREQDWTGNEFDELTE+GFRRWVITNSSKLKE
Sbjct: 1   MRKNQCKKAENSKNQNASSPPKDHNSSPAREQDWTGNEFDELTEIGFRRWVITNSSKLKE 60

Query: 61  HVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEER 120
           HVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEER
Sbjct: 61  HVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEER 120

Query: 121 ISEIEDQLNEIK 132
           ISEIEDQLNEIK
Sbjct: 121 ISEIEDQLNEIK 132


>gi|239748549 PREDICTED: hypothetical protein LOC100129791 [Homo
           sapiens]
          Length = 338

 Score =  136 bits (342), Expect = 5e-33
 Identities = 70/132 (53%), Positives = 94/132 (71%), Gaps = 3/132 (2%)

Query: 1   MRKNQCKKAENSKNQNASSPPKDHNSSPAREQDWTGNEFDELTEVGFRRWVITNSSKLKE 60
           M K Q +K  NSK Q+AS PPK+ +SSPA EQ W  N+FDEL E GFRR   +N S+L+E
Sbjct: 1   MGKKQSRKTGNSKKQSASPPPKECSSSPATEQSWMENDFDELREAGFRR---SNYSELRE 57

Query: 61  HVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEER 120
            + T+ K+V+N EK L++ +T I + EK + +LMELK  ARELRE   S+ SR DQ EER
Sbjct: 58  DIQTKGKKVENFEKNLEECITRITNTEKCLKELMELKTKARELREECRSLRSRCDQLEER 117

Query: 121 ISEIEDQLNEIK 132
           +S +ED++NE+K
Sbjct: 118 VSAMEDEMNEMK 129


>gi|239742533 PREDICTED: hypothetical protein LOC100129791 [Homo
           sapiens]
          Length = 338

 Score =  136 bits (342), Expect = 5e-33
 Identities = 70/132 (53%), Positives = 94/132 (71%), Gaps = 3/132 (2%)

Query: 1   MRKNQCKKAENSKNQNASSPPKDHNSSPAREQDWTGNEFDELTEVGFRRWVITNSSKLKE 60
           M K Q +K  NSK Q+AS PPK+ +SSPA EQ W  N+FDEL E GFRR   +N S+L+E
Sbjct: 1   MGKKQSRKTGNSKKQSASPPPKECSSSPATEQSWMENDFDELREAGFRR---SNYSELRE 57

Query: 61  HVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEER 120
            + T+ K+V+N EK L++ +T I + EK + +LMELK  ARELRE   S+ SR DQ EER
Sbjct: 58  DIQTKGKKVENFEKNLEECITRITNTEKCLKELMELKTKARELREECRSLRSRCDQLEER 117

Query: 121 ISEIEDQLNEIK 132
           +S +ED++NE+K
Sbjct: 118 VSAMEDEMNEMK 129


>gi|239754018 PREDICTED: hypothetical protein LOC100129791 [Homo
           sapiens]
          Length = 338

 Score =  134 bits (338), Expect = 2e-32
 Identities = 70/132 (53%), Positives = 93/132 (70%), Gaps = 3/132 (2%)

Query: 1   MRKNQCKKAENSKNQNASSPPKDHNSSPAREQDWTGNEFDELTEVGFRRWVITNSSKLKE 60
           M K Q +K  NSK Q+AS PPK+ +SSPA EQ W  N+FDEL E GFRR   +N S+L+E
Sbjct: 1   MGKKQSRKTGNSKKQSASPPPKECSSSPATEQSWMENDFDELREAGFRR---SNYSELRE 57

Query: 61  HVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEER 120
            + T+ KEV+N EK L++ +T I + EK + +LMELK  AREL E   S+ SR DQ EER
Sbjct: 58  DIQTKGKEVENFEKNLEECITRITNTEKCLKELMELKTKARELCEECRSLRSRCDQLEER 117

Query: 121 ISEIEDQLNEIK 132
           +S +ED++NE+K
Sbjct: 118 VSAMEDEMNEMK 129


>gi|239753730 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 113

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 5/77 (6%)

Query: 57  KLKEHVLTQCKEVK-NLEKRL----DKLLTGINSLEKNINDLMELKNTARELREAYTSIN 111
           + K  VL +  E++ N EK L    DK++  I  ++ N  +++ELKN     + A  S+N
Sbjct: 27  EFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEIIKMNQAEILELKNATDIRKNASGSLN 86

Query: 112 SRIDQAEERISEIEDQL 128
            R++ +EERISE+ D L
Sbjct: 87  KRLNLSEERISELGDSL 103


>gi|239748243 PREDICTED: hypothetical protein XP_002346620 [Homo
           sapiens]
          Length = 113

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 5/77 (6%)

Query: 57  KLKEHVLTQCKEVK-NLEKRL----DKLLTGINSLEKNINDLMELKNTARELREAYTSIN 111
           + K  VL +  E++ N EK L    DK++  I  ++ N  +++ELKN     + A  S+N
Sbjct: 27  EFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEIIKMNQAEILELKNATDIRKNASGSLN 86

Query: 112 SRIDQAEERISEIEDQL 128
            R++ +EERISE+ D L
Sbjct: 87  KRLNLSEERISELGDSL 103


>gi|239742144 PREDICTED: hypothetical protein XP_002342414 [Homo
           sapiens]
          Length = 113

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 5/77 (6%)

Query: 57  KLKEHVLTQCKEVK-NLEKRL----DKLLTGINSLEKNINDLMELKNTARELREAYTSIN 111
           + K  VL +  E++ N EK L    DK++  I  ++ N  +++ELKN     + A  S+N
Sbjct: 27  EFKIAVLRKLNEIQDNTEKELKVLSDKIIKEIEIIKMNQAEILELKNATDIRKNASGSLN 86

Query: 112 SRIDQAEERISEIEDQL 128
            R++ +EERISE+ D L
Sbjct: 87  KRLNLSEERISELGDSL 103


>gi|14917119 keratin 34 [Homo sapiens]
          Length = 436

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 23/102 (22%), Positives = 56/102 (54%), Gaps = 4/102 (3%)

Query: 35  TGNEFDELTEVGFR---RWVITNSSKLKEHVLTQCKEVKNLEKRLDKLLTGINSLEKNIN 91
           T ++++ L E+  R   +W  T + +L + V++  +++++ +  + +L   +N+LE  + 
Sbjct: 270 TRSQYEALVEINRREVEQWFATQTEELNKQVVSSSEQLQSCQAEIIELRRTVNALEIELQ 329

Query: 92  DLMELKNTARE-LREAYTSINSRIDQAEERISEIEDQLNEIK 132
               L+++    L E+    +S++ Q +  I+ +E QL EI+
Sbjct: 330 AQHNLRDSLENTLTESEAHYSSQLSQVQSLITNVESQLAEIR 371


>gi|10337581 type I hair keratin 3B [Homo sapiens]
          Length = 404

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 10/105 (9%)

Query: 35  TGNEFDELTEVGFR---RWVITNSSKLKEHVLTQCKEVKNLEKRLDKLLTGINSLEKNI- 90
           T N+++ L E   R   +W  T + +L + V++  +++++ +  + +L   +N+LE  + 
Sbjct: 228 TRNQYEALVETNRREVEQWFATQTEELNKQVVSSSEQLQSYQAEIIELRRTVNALEIELQ 287

Query: 91  ---NDLMELKNTARELREAYTSINSRIDQAEERISEIEDQLNEIK 132
              N    L+NT  E    Y   +S++ Q +  I+ +E QL EI+
Sbjct: 288 AQHNLRYSLENTLTESEARY---SSQLSQVQSLITNVESQLAEIR 329


>gi|14917115 keratin 31 [Homo sapiens]
          Length = 416

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 28/132 (21%), Positives = 67/132 (50%), Gaps = 8/132 (6%)

Query: 5   QCKKAENSKNQNASSPPKDHNSSPAREQDWTGNEFDELTEVGFR---RWVITNSSKLKEH 61
           +C+  +    +  ++P  D N    R  + T ++++ L E   R   +W  T + +L + 
Sbjct: 202 RCQLGDRLNVEVDAAPTVDLN----RVLNETRSQYEALVETNRREVEQWFTTQTEELNKQ 257

Query: 62  VLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARE-LREAYTSINSRIDQAEER 120
           V++  +++++ +  + +L   +N+LE  +     L+++    L E+    +S++ Q +  
Sbjct: 258 VVSSSEQLQSYQAEIIELRRTVNALEIELQAQHNLRDSLENTLTESEARYSSQLSQVQSL 317

Query: 121 ISEIEDQLNEIK 132
           I+ +E QL EI+
Sbjct: 318 ITNVESQLAEIR 329


>gi|14917117 keratin 33A [Homo sapiens]
          Length = 404

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 23/102 (22%), Positives = 55/102 (53%), Gaps = 4/102 (3%)

Query: 35  TGNEFDELTEVGFR---RWVITNSSKLKEHVLTQCKEVKNLEKRLDKLLTGINSLEKNIN 91
           T ++++ L E   R   +W  T + +L + V++  +++++ +  + +L   +N+LE  + 
Sbjct: 228 TRSQYEALVETNRREVEQWFATQTEELNKQVVSSSEQLQSYQAEIIELRRTVNALEIELQ 287

Query: 92  DLMELKNTARE-LREAYTSINSRIDQAEERISEIEDQLNEIK 132
               L+++    L E+    +S++ Q +  I+ +E QL EI+
Sbjct: 288 AQHNLRDSLENTLTESEARYSSQLSQVQRLITNVESQLAEIR 329


>gi|143770880 laminin, beta 4 [Homo sapiens]
          Length = 1761

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 55   SSKLKEHVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMEL-KNTARELREAYTSINSR 113
            S  L  + L + +E K++ + LDK + G+ +  ++I++  E+ KN A +LRE   +I ++
Sbjct: 1411 SLTLSTNALQKAQEAKSIIRNLDKQVRGLKNQIESISEQAEVSKNNALQLREKLGNIRNQ 1470

Query: 114  IDQAEERIS 122
             D  EE I+
Sbjct: 1471 SDSEEENIN 1479



 Score = 28.5 bits (62), Expect = 1.6
 Identities = 13/59 (22%), Positives = 29/59 (49%)

Query: 74   KRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEERISEIEDQLNEIK 132
            K  +K    + +L+K +N L + + T        T + + I + ++ + + E+Q  E+K
Sbjct: 1557 KAAEKAANILLNLDKTLNQLQQAQITQGRANSTITQLTANITKIKKNVLQAENQTREMK 1615


>gi|4504063 golgin 97 [Homo sapiens]
          Length = 767

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 13/86 (15%)

Query: 52  ITNSSKLKEHVLTQCKE-VKNLEKRLDKLLTGINSLEKNINDLME--------LKNTARE 102
           +T  ++ KE V+T  +E V +LEKRL++ L+G    E+++ +L++        L++T ++
Sbjct: 282 VTAETQEKEDVITHLQEKVASLEKRLEQNLSG----EEHVQELLKEKTLAEQNLEDTRQQ 337

Query: 103 LREAYTSINSRIDQAEERISEIEDQL 128
           L  A +S    I+  E R+ E+E  L
Sbjct: 338 LLAARSSQAKAINTLETRVRELEQTL 363


>gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo
           sapiens]
          Length = 603

 Score = 37.0 bits (84), Expect = 0.005
 Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 6   CKKAENSKNQNASSPPKDHNSSPAREQDWTGNEFD-ELTEVGFRRWVITNSSKLKEHVLT 64
           C  +E S + ++S   +    SP +EQ    N    +++ +      +    K  EH L 
Sbjct: 51  CHSSEASSSASSSLHARQ---SPCQEQAAVLNSRSIKISRLNDTIKSLKQQKKQVEHQLE 107

Query: 65  QCKEVKNLEKRLDKLLTG----INSLEKNIN-DLMELKNTARELREAYTSINSRIDQAEE 119
           + K+  N +++ ++ L G    +N+ +K +N DL  +K++ R   E    +  R+ ++ +
Sbjct: 108 EEKKANNEKQKAERELEGQIQRLNTEKKKLNTDLYHMKHSLRYFEEESKDLAGRLQRSSQ 167

Query: 120 RISEIE 125
           RI E+E
Sbjct: 168 RIGELE 173



 Score = 28.1 bits (61), Expect = 2.1
 Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 65  QCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEERISEI 124
           Q + ++  E+RL +    +   EK +  L E ++   EL+      N    Q E+++ E+
Sbjct: 331 QKERLREQEERLQEQQERLREREKRLQQLAEPQSDLEELKHE----NKSALQLEQQVKEL 386

Query: 125 EDQLNEI 131
           +++L ++
Sbjct: 387 QEKLGQV 393


>gi|31083099 golgi autoantigen, golgin subfamily a, 8A [Homo
           sapiens]
          Length = 603

 Score = 37.0 bits (84), Expect = 0.005
 Identities = 30/126 (23%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 6   CKKAENSKNQNASSPPKDHNSSPAREQDWTGNEFD-ELTEVGFRRWVITNSSKLKEHVLT 64
           C  +E S + ++S   +    SP +EQ    N    +++ +      +    K  EH L 
Sbjct: 51  CHSSEASSSASSSLHARQ---SPCQEQAAVLNSRSIKISRLNDTIKSLKQQKKQVEHQLE 107

Query: 65  QCKEVKNLEKRLDKLLTG----INSLEKNIN-DLMELKNTARELREAYTSINSRIDQAEE 119
           + K+  N +++ ++ L G    +N+ +K +N DL  +K++ R   E    +  R+ ++ +
Sbjct: 108 EEKKANNEKQKAERELEGQIQRLNTEKKKLNTDLYHMKHSLRYFEEESKDLAGRLQRSSQ 167

Query: 120 RISEIE 125
           RI E+E
Sbjct: 168 RIGELE 173



 Score = 28.1 bits (61), Expect = 2.1
 Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 65  QCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEERISEI 124
           Q + ++  E+RL +    +   EK +  L E ++   EL+      N    Q E+++ E+
Sbjct: 331 QKERLREQEERLQEQQERLREREKRLQQLAEPQSDLEELKHE----NKSALQLEQQVKEL 386

Query: 125 EDQLNEI 131
           +++L ++
Sbjct: 387 QEKLGQV 393


>gi|157694505 LINE-1 type transposase domain containing 1 [Homo
           sapiens]
          Length = 865

 Score = 37.0 bits (84), Expect = 0.005
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 4/88 (4%)

Query: 43  TEVGFRRWVITNSSKLKEHVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARE 102
           TE    R + T     KE  LT+  E    E     ++  I  +++ I +L    +   E
Sbjct: 589 TEEKKHRTLHTEELTSKEADLTEETE----ENLRSSVINSIREIKEEIGNLKSSHSGVLE 644

Query: 103 LREAYTSINSRIDQAEERISEIEDQLNE 130
           +  +   ++SR+D  EERI  +EDQ+ E
Sbjct: 645 IENSVDDLSSRMDILEERIDSLEDQIEE 672


>gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens]
          Length = 1417

 Score = 35.4 bits (80), Expect = 0.013
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 53  TNSSKLKEHVLTQCKEVKNLEKRLDKLLTGINSL-EKNINDLMELKNTARELREAYTSIN 111
           +NSSKL+  +  +C ++  LEK+L++ +   +S+  KN     EL     ++R   T+IN
Sbjct: 683 SNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNIN 742

Query: 112 S 112
           +
Sbjct: 743 T 743



 Score = 28.1 bits (61), Expect = 2.1
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 5/94 (5%)

Query: 43   TEVGFRRWVITNSSKLKEHVLTQCKEVKNLEKRLD-KLLTGINSLEKNINDLMELKNTAR 101
            TE+  +   +    KL+    T+  E     + L+ +L      L+  +  L EL++  +
Sbjct: 1032 TELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQ 1091

Query: 102  E----LREAYTSINSRIDQAEERISEIEDQLNEI 131
            +    L E YT+I     +  E   EIED+  E+
Sbjct: 1092 KAQLSLEEKYTTIKDLTAELRECKMEIEDKKQEL 1125



 Score = 26.6 bits (57), Expect = 6.1
 Identities = 13/55 (23%), Positives = 27/55 (49%)

Query: 78  KLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEERISEIEDQLNEIK 132
           KL + + + ++ + D   L N  REL+    + N R+D  ++ I     +L  ++
Sbjct: 460 KLESELENKDEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIESSRVELRSLE 514


>gi|55770888 early endosome antigen 1, 162kD [Homo sapiens]
          Length = 1411

 Score = 35.0 bits (79), Expect = 0.017
 Identities = 18/79 (22%), Positives = 43/79 (54%), Gaps = 4/79 (5%)

Query: 58  LKEHVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLME----LKNTARELREAYTSINSR 113
           L+ H+ T    +++ ++ L+K+ T ++ +   + D  E    L++  +E +E Y S+  +
Sbjct: 665 LQNHLDTAQNALQDKQQELNKITTQLDQVTAKLQDKQEHCSQLESHLKEYKEKYLSLEQK 724

Query: 114 IDQAEERISEIEDQLNEIK 132
            ++ E +I ++E    E+K
Sbjct: 725 TEELEGQIKKLEADSLEVK 743



 Score = 28.1 bits (61), Expect = 2.1
 Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 12/108 (11%)

Query: 30  REQDWTGNEFDELTEVGFRRWVITNSSKLKEHVLTQCKEVKNLEKRLDKLLTGINSLEKN 89
           +E+ W   E  +  E+   + +    +K    V     E+++LE++L++  T  N   K 
Sbjct: 100 KEEKWYSEELKK--ELEKYQGLQQQEAKPDGLVTDSSAELQSLEQQLEEAQTE-NFNIKQ 156

Query: 90  INDLMELKNTARELREAYTSINSRIDQ-------AEERISEIEDQLNE 130
           + DL E K  A +L      I S+ D+       AE++++ + ++LN+
Sbjct: 157 MKDLFEQK--AAQLATEIADIKSKYDEERSLREAAEQKVTRLTEELNK 202



 Score = 27.3 bits (59), Expect = 3.6
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 5/72 (6%)

Query: 66  CKEVKN-----LEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEER 120
           CKE+K+     +E  L +      SLEK      +LK     ++E      + + Q E+ 
Sbjct: 894 CKELKHQLQVQMENTLKEQKELKKSLEKEKEASHQLKLELNSMQEQLIQAQNTLKQNEKE 953

Query: 121 ISEIEDQLNEIK 132
             +++  +NE+K
Sbjct: 954 EQQLQGNINELK 965



 Score = 26.6 bits (57), Expect = 6.1
 Identities = 18/74 (24%), Positives = 42/74 (56%), Gaps = 4/74 (5%)

Query: 60  EHVLTQCKEVKNLEKRLDKLLTGINSLEKNINDL-MELKNTARELREAYTSINSRIDQAE 118
           +H+  + K+++  ++R +K   G+  L+  IN L  +L  T R+L EA+  +  +   + 
Sbjct: 389 QHLKAEFKQLQ--QQREEKEQHGLQ-LQSEINQLHSKLLETERQLGEAHGRLKEQRQLSS 445

Query: 119 ERISEIEDQLNEIK 132
           E++ + E Q+ +++
Sbjct: 446 EKLMDKEQQVADLQ 459


>gi|198442844 dynein, axonemal, heavy chain 10 [Homo sapiens]
          Length = 4471

 Score = 34.7 bits (78), Expect = 0.022
 Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 59   KEHVLTQCKEVKNLEKRL-DKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQA 117
            +EH++ +  E KNL K L D LL  + +   N+ D ++L +T  E +   T ++ ++  A
Sbjct: 3575 REHLIQETSENKNLLKDLEDSLLRELATSTGNMLDNVDLVHTLEETKSKATEVSEKLKLA 3634

Query: 118  EERISEIE 125
            E+   +I+
Sbjct: 3635 EKTALDID 3642



 Score = 30.8 bits (68), Expect = 0.32
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 38   EFDELTEVGFRRWVITNSSKLKEHVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELK 97
            +FD + +V F+R +      LK+ V+ +C E  N    L  +  G+   +K++ND ++ K
Sbjct: 1506 KFDNIDKV-FKRIM---GETLKDPVIKRCCEAPNRLSDLQNVSEGLEKCQKSLNDYLDSK 1561

Query: 98   NTA 100
              A
Sbjct: 1562 RNA 1564



 Score = 27.3 bits (59), Expect = 3.6
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 48   RRWVITNSSKLKEHVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAY 107
            + WVI+    L E      +E+ NL + ++ L   +  +   + DL  +  T  E+R   
Sbjct: 1063 KSWVISLGKLLNESAK---EELYNLHEEMEHLAKNLRKIPNTLEDLKFVLATIAEIRSKS 1119

Query: 108  TSINSRIDQAEER 120
              +  R    +ER
Sbjct: 1120 LVMELRYRDVQER 1132


>gi|58535451 CDK5 regulatory subunit associated protein 2 isoform a
            [Homo sapiens]
          Length = 1893

 Score = 34.7 bits (78), Expect = 0.022
 Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 1/122 (0%)

Query: 8    KAENSKNQNASSPPKDHNSSPAREQDWTGNEFDEL-TEVGFRRWVITNSSKLKEHVLTQC 66
            K EN + Q   S  + HN    +E   +G E   +  EV  R+ +++ + KL + +  + 
Sbjct: 1502 KEENERLQKEGSEKERHNQQLIQEVRCSGQELSRVQEEVKLRQQLLSQNDKLLQSLRVEL 1561

Query: 67   KEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEERISEIED 126
            K  + L++   +L        K  +   +L +   E++     +   I+ +    S +++
Sbjct: 1562 KAYEKLDEEHRRLREASGEGWKGQDPFRDLHSLLMEIQALRLQLERSIETSSTLQSRLKE 1621

Query: 127  QL 128
            QL
Sbjct: 1622 QL 1623


>gi|148277620 type I hair keratin KA35 [Homo sapiens]
          Length = 491

 Score = 34.3 bits (77), Expect = 0.029
 Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 2/129 (1%)

Query: 5   QCKKAENSKNQNASSPPKDHNSSPAREQDWTGNEFDELTEVGFRRWVITNSSKLKEHVLT 64
           QC+  E    +  ++P  D N    +E         E       +W  T   +L + V+T
Sbjct: 242 QCQLGERLDIEVTAAPSADLNQV-LQEMRCQYEPIMETNRKDVEQWFNTQIEELNQQVVT 300

Query: 65  QCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTAR-ELREAYTSINSRIDQAEERISE 123
             ++ +  +K + +L   +N+LE  +     ++++    L E      + + Q +  I  
Sbjct: 301 SSQQQQCCQKEIIELRRSVNTLEVELQAQHRMRDSQECILTETEARYTALLTQIQSLIDN 360

Query: 124 IEDQLNEIK 132
           +E QL EI+
Sbjct: 361 LEAQLAEIR 369


>gi|216548091 leucine zipper protein 1 [Homo sapiens]
          Length = 1076

 Score = 34.3 bits (77), Expect = 0.029
 Identities = 17/65 (26%), Positives = 40/65 (61%)

Query: 68  EVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEERISEIEDQ 127
           ++++L +RLD+L     +L+K  ++L++L++   +   + +S+ + I+   +R+  IE +
Sbjct: 19  KLQSLSRRLDELEEATKNLQKAEDELLDLQDKVIQAEGSNSSMLAEIEVLRQRVLRIEGK 78

Query: 128 LNEIK 132
             EIK
Sbjct: 79  DEEIK 83



 Score = 27.7 bits (60), Expect = 2.7
 Identities = 14/58 (24%), Positives = 30/58 (51%)

Query: 68  EVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEERISEIE 125
           E++ L+KR+ +L     +  ++ ND  +L  +  E R     I+S ++    ++ E+E
Sbjct: 109 EIERLQKRMAELEKLEEAFSRSKNDCTQLCLSLNEERNLTKKISSELEMLRVKVKELE 166


>gi|216548085 leucine zipper protein 1 [Homo sapiens]
          Length = 1076

 Score = 34.3 bits (77), Expect = 0.029
 Identities = 17/65 (26%), Positives = 40/65 (61%)

Query: 68  EVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEERISEIEDQ 127
           ++++L +RLD+L     +L+K  ++L++L++   +   + +S+ + I+   +R+  IE +
Sbjct: 19  KLQSLSRRLDELEEATKNLQKAEDELLDLQDKVIQAEGSNSSMLAEIEVLRQRVLRIEGK 78

Query: 128 LNEIK 132
             EIK
Sbjct: 79  DEEIK 83



 Score = 27.7 bits (60), Expect = 2.7
 Identities = 14/58 (24%), Positives = 30/58 (51%)

Query: 68  EVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEERISEIE 125
           E++ L+KR+ +L     +  ++ ND  +L  +  E R     I+S ++    ++ E+E
Sbjct: 109 EIERLQKRMAELEKLEEAFSRSKNDCTQLCLSLNEERNLTKKISSELEMLRVKVKELE 166


>gi|34577114 cytomatrix protein p110 [Homo sapiens]
          Length = 957

 Score = 33.9 bits (76), Expect = 0.038
 Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 41  ELTEVGFRRWVITNSSKLKEHVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMEL---K 97
           ELTE  FRR    +  + KE  L + K ++ +E R++     +N+ +++I  L+E+   K
Sbjct: 257 ELTEENFRRLQAEHDRQAKELFLLR-KTLEEMELRIETQKQTLNARDESIKKLLEMLQSK 315

Query: 98  NTARELREAYTSINSRIDQAEERISEIEDQLNE 130
               +  E       R+ +AE ++S +E  L++
Sbjct: 316 GLPSKSLEDDNERTRRMAEAESQVSHLEVILDQ 348


>gi|116488398 keratin 32 [Homo sapiens]
          Length = 448

 Score = 33.5 bits (75), Expect = 0.050
 Identities = 22/99 (22%), Positives = 48/99 (48%), Gaps = 4/99 (4%)

Query: 38  EFDELTEVGFR---RWVITNSSKLKEHVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLM 94
           +++ + E   R    W      +L + V T  ++++N +  +  L   +N+LE  +    
Sbjct: 271 QYEAMVEANRRDVEEWFNMQMEELNQQVATSSEQLQNYQSDIIDLRRTVNTLEIELQAQH 330

Query: 95  ELKNTARE-LREAYTSINSRIDQAEERISEIEDQLNEIK 132
            L+++    L E+    +S++ Q +  I+ +E QL EI+
Sbjct: 331 SLRDSLENTLTESEARYSSQLAQMQCMITNVEAQLAEIR 369


>gi|239745299 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 523

 Score = 33.5 bits (75), Expect = 0.050
 Identities = 20/74 (27%), Positives = 36/74 (48%)

Query: 57  KLKEHVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQ 116
           +L+EH    C++ + L ++ ++L      L +    L E +   RE  E       R+ +
Sbjct: 249 RLREHEERLCEQEERLCEQEERLREQEERLHEQEERLCEQEERLREQEERLCEQEERLRE 308

Query: 117 AEERISEIEDQLNE 130
            EER+ E E++L E
Sbjct: 309 QEERLCEQEERLRE 322



 Score = 28.5 bits (62), Expect = 1.6
 Identities = 18/74 (24%), Positives = 33/74 (44%)

Query: 57  KLKEHVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQ 116
           +L+E     C++ + L +  ++L      L +    L E +    E  E       R+ +
Sbjct: 235 RLREQEERLCEQEERLREHEERLCEQEERLCEQEERLREQEERLHEQEERLCEQEERLRE 294

Query: 117 AEERISEIEDQLNE 130
            EER+ E E++L E
Sbjct: 295 QEERLCEQEERLRE 308


>gi|49258196 syntaxin 19 [Homo sapiens]
          Length = 294

 Score = 33.5 bits (75), Expect = 0.050
 Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 15/84 (17%)

Query: 49  RWVITNSSKLKEHVLTQCKEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYT 108
           +W + N S L E  +T+ +               ++ +E+   +L+ L+N  ++LR+ + 
Sbjct: 190 KWEVFNESLLTEINITKAQ---------------LSEIEQRHKELVNLENQIKDLRDLFI 234

Query: 109 SINSRIDQAEERISEIEDQLNEIK 132
            I+  +++  E I+ IE  +N  K
Sbjct: 235 QISLLVEEQGESINNIEMTVNSTK 258


>gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo
            sapiens]
          Length = 1935

 Score = 33.1 bits (74), Expect = 0.065
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 60   EHVLTQCKEVKNLEKRLDKLLTGINSLEKNINDL----MELKNTARELREAYTSINSRID 115
            EH+ T  +E KNL++ +  L   + S  K I++L     +L+    EL+ A     + ++
Sbjct: 1493 EHLETFKRENKNLQEEISDLTEQLGSSGKTIHELEKVRKQLEAEKMELQSALEEAEASLE 1552

Query: 116  QAEERISEIEDQLNEIK 132
              E +I   + + N+IK
Sbjct: 1553 HEEGKILRAQLEFNQIK 1569



 Score = 30.0 bits (66), Expect = 0.55
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 67   KEVKNLEKRLDKLLTGINSLEKNINDLMELKNTARELREAYTSINSRIDQAEERISEIED 126
            K +  L+  +DKL   + + ++   +  E  NT       +  +   +D+AEER    E 
Sbjct: 1859 KNLLRLQDLVDKLQLKVKAYKRQAEEAEEQANTNLS---KFRKVQHELDEAEERADIAES 1915

Query: 127  QLNEIK 132
            Q+N+++
Sbjct: 1916 QVNKLR 1921


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.307    0.124    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,647,250
Number of Sequences: 37866
Number of extensions: 181812
Number of successful extensions: 1534
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 180
Number of HSP's that attempted gapping in prelim test: 1215
Number of HSP's gapped (non-prelim): 503
length of query: 132
length of database: 18,247,518
effective HSP length: 91
effective length of query: 41
effective length of database: 14,801,712
effective search space: 606870192
effective search space used: 606870192
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 56 (26.2 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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