Guide to the Human Genome
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Name: LOC100290644 Sequence: fasta or formatted (105aa) NCBI GI: 239748797
Description:

PREDICTED: hypothetical protein XP_002346805

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         12           1
 C cysteine            2.9          3           1
 D aspartate           2.9          3           1
 E glutamate           4.8          5           1
 F phenylalanine       4.8          5           3
 G glycine             6.7          7           1
 H histidine           4.8          5           1
 I isoleucine          2.9          3           1
 K lysine              1.9          2           1
 L leucine            21.0         22           3
 M methionine          1.0          1           1
 N asparagine          0.0          0           0
 P proline             4.8          5           1
 Q glutamine          11.4         12           2
 R arginine            5.7          6           1
 S serine              3.8          4           1
 T threonine           4.8          5           1
 V valine              2.9          3           1
 W tryptophan          1.0          1           1
 Y tyrosine            1.0          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346805 
LOC100291800          1.000   PREDICTED: hypothetical protein XP_002345937 
LOC100289039          1.000   PREDICTED: hypothetical protein XP_002342675 
LOC100293937          0.223   PREDICTED: hypothetical protein 
LOC100290442          0.223   PREDICTED: hypothetical protein XP_002348040 
LOC100288849          0.223   PREDICTED: hypothetical protein XP_002343743 
LOC100292008          0.213   PREDICTED: similar to ZNF668 protein 
LOC100291370          0.213   PREDICTED: hypothetical protein XP_002347637 
LOC100287385          0.213   PREDICTED: hypothetical protein XP_002343487 
HERPUD1               0.016   homocysteine-inducible, endoplasmic reticulum stress...
MLNR                  0.016   motilin receptor 
LOC100292027          0.011   PREDICTED: hypothetical protein XP_002346219 
LOC100289889          0.011   PREDICTED: hypothetical protein XP_002347104 
LOC100287858          0.011   PREDICTED: hypothetical protein XP_002342987 
OBSCN                 0.011   obscurin, cytoskeletal calmodulin and titin-interac...
KIFC3                 0.011   kinesin family member C3 isoform 2 
KIFC3                 0.011   kinesin family member C3 isoform 3 
KIFC3                 0.011   kinesin family member C3 isoform 1 
LOC644366             0.005   PREDICTED: hypothetical protein 
LOC100294346          0.005   PREDICTED: hypothetical protein XP_002344115 
CYP3A5                0.005   cytochrome P450, family 3, subfamily A, polypeptide 5...
HERC2                 0.005   hect domain and RLD 2 
HERPUD1               0.005   homocysteine-inducible, endoplasmic reticulum stress-...
LOC389813             0.005   similar to CG15216-PA 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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