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Search of human proteins with 118600971
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|118600971 transcription elongation factor A (SII)-like 6
[Homo sapiens]
(183 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|118600971 transcription elongation factor A (SII)-like 6 [Hom... 382 e-107
gi|55749431 transcription elongation factor A (SII)-like 3 [Homo... 354 2e-98
gi|14249718 transcription elongation factor A (SII)-like 3 [Homo... 354 2e-98
gi|61175239 transcription elongation factor A (SII)-like 5 [Homo... 323 4e-89
gi|55749459 transcription elongation factor A (SII)-like 4 [Homo... 157 4e-39
gi|55749442 transcription elongation factor A (SII)-like 4 [Homo... 157 4e-39
gi|65505873 transcription elongation factor A (SII)-like 4 [Homo... 157 4e-39
gi|55749451 transcription elongation factor A (SII)-like 4 [Homo... 157 4e-39
gi|17933774 transcription elongation factor A (SII)-like 2 [Homo... 148 2e-36
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 57 1e-08
gi|13540523 nucleosomal binding protein 1 [Homo sapiens] 55 4e-08
gi|55749466 transcription elongation factor A (SII)-like 8 [Homo... 53 1e-07
gi|23503247 transcription elongation factor A (SII)-like 8 [Homo... 53 1e-07
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 51 5e-07
gi|21361639 DIPB protein [Homo sapiens] 50 1e-06
gi|34482047 adaptor-related protein complex 3, beta 2 subunit [H... 49 2e-06
gi|20270337 Leo1, Paf1/RNA polymerase II complex component, homo... 49 2e-06
gi|55743140 WW domain binding protein 5 [Homo sapiens] 49 2e-06
gi|55743147 WW domain binding protein 5 [Homo sapiens] 49 2e-06
gi|10047100 WW domain binding protein 5 [Homo sapiens] 49 2e-06
gi|55743145 WW domain binding protein 5 [Homo sapiens] 49 2e-06
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens] 48 5e-06
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 48 5e-06
gi|55956788 nucleolin [Homo sapiens] 47 7e-06
gi|4759128 solute carrier family 24 (sodium/potassium/calcium ex... 47 7e-06
gi|239754909 PREDICTED: hypothetical protein [Homo sapiens] 47 9e-06
gi|105990539 neurofilament, light polypeptide 68kDa [Homo sapiens] 47 1e-05
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens] 46 2e-05
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens] 46 2e-05
gi|190014588 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo... 45 3e-05
>gi|118600971 transcription elongation factor A (SII)-like 6 [Homo
sapiens]
Length = 183
Score = 382 bits (982), Expect = e-107
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQL 60
MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQL
Sbjct: 1 MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQL 60
Query: 61 EDKGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDRGTDD 120
EDKGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDRGTDD
Sbjct: 61 EDKGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDRGTDD 120
Query: 121 SPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHWMQRDVQDPFAQGDNGV 180
SPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHWMQRDVQDPFAQGDNGV
Sbjct: 121 SPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHWMQRDVQDPFAQGDNGV 180
Query: 181 SGE 183
SGE
Sbjct: 181 SGE 183
>gi|55749431 transcription elongation factor A (SII)-like 3 [Homo
sapiens]
Length = 200
Score = 354 bits (909), Expect = 2e-98
Identities = 171/183 (93%), Positives = 175/183 (95%), Gaps = 1/183 (0%)
Query: 1 MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQL 60
MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPD EGKTECEGKR+ EGEPGDEGQL
Sbjct: 1 MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTECEGKREDEGEPGDEGQL 60
Query: 61 EDKGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDRGTDD 120
ED+GSQEKQG+SEGEGKPQGEGKPASQAKPE QPRAAEKRPA DYVPRKAKRKTDRGTDD
Sbjct: 61 EDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTDRGTDD 120
Query: 121 SPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHWMQRDVQDPFA-QGDNG 179
SPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHWMQRDVQDPFA +G G
Sbjct: 121 SPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHWMQRDVQDPFAPRGQRG 180
Query: 180 VSG 182
V G
Sbjct: 181 VRG 183
>gi|14249718 transcription elongation factor A (SII)-like 3 [Homo
sapiens]
Length = 200
Score = 354 bits (909), Expect = 2e-98
Identities = 171/183 (93%), Positives = 175/183 (95%), Gaps = 1/183 (0%)
Query: 1 MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQL 60
MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPD EGKTECEGKR+ EGEPGDEGQL
Sbjct: 1 MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDVEGKTECEGKREDEGEPGDEGQL 60
Query: 61 EDKGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDRGTDD 120
ED+GSQEKQG+SEGEGKPQGEGKPASQAKPE QPRAAEKRPA DYVPRKAKRKTDRGTDD
Sbjct: 61 EDEGSQEKQGRSEGEGKPQGEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKTDRGTDD 120
Query: 121 SPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHWMQRDVQDPFA-QGDNG 179
SPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHWMQRDVQDPFA +G G
Sbjct: 121 SPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHWMQRDVQDPFAPRGQRG 180
Query: 180 VSG 182
V G
Sbjct: 181 VRG 183
>gi|61175239 transcription elongation factor A (SII)-like 5 [Homo
sapiens]
Length = 206
Score = 323 bits (829), Expect = 4e-89
Identities = 161/189 (85%), Positives = 168/189 (88%), Gaps = 7/189 (3%)
Query: 1 MEKPYNKNEG------NLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEP 54
MEK Y +NEG NLE+EGKPEDE +DEGKSDEEEKPD EGKTECEGKR+ EGEP
Sbjct: 1 MEKLYKENEGKPENERNLESEGKPEDEGSTEDEGKSDEEEKPDMEGKTECEGKREDEGEP 60
Query: 55 GDEGQLEDKGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKT 114
GDEGQLED+G+QEKQGKSEGE KPQ EGKPASQAKPE QPRAAEKRPA DYVPRKAKRKT
Sbjct: 61 GDEGQLEDEGNQEKQGKSEGEDKPQSEGKPASQAKPESQPRAAEKRPAEDYVPRKAKRKT 120
Query: 115 DRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHWMQRDVQDPFA 174
DRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHWMQRDVQDPFA
Sbjct: 121 DRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHWMQRDVQDPFA 180
Query: 175 -QGDNGVSG 182
+G GV G
Sbjct: 181 PRGQRGVRG 189
>gi|55749459 transcription elongation factor A (SII)-like 4 [Homo
sapiens]
Length = 215
Score = 157 bits (398), Expect = 4e-39
Identities = 87/190 (45%), Positives = 126/190 (66%), Gaps = 17/190 (8%)
Query: 1 MEKPYNKNEGNLENEGKPEDEVEPDDEGKSD-----EEEKPDAEGKTECEGKR------K 49
MEK Y++NEG N+GK E+E +P DE K + E++K + EGKTE +GK K
Sbjct: 1 MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLK 60
Query: 50 AEGEPGDEGQLED-----KGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGD 104
+G+P EG+ ++ +G E +G SE EGKP+ EGKP S+ +P + RAA KRPA D
Sbjct: 61 DKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAED 120
Query: 105 YVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRK-KQKMGGFH 163
VPRKAKRKT++G K+ +E + + + S+E+M+RE ++++ Q+E RK KQK+G F
Sbjct: 121 DVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFL 180
Query: 164 WMQRDVQDPF 173
WMQR++QDPF
Sbjct: 181 WMQRNLQDPF 190
>gi|55749442 transcription elongation factor A (SII)-like 4 [Homo
sapiens]
Length = 215
Score = 157 bits (398), Expect = 4e-39
Identities = 87/190 (45%), Positives = 126/190 (66%), Gaps = 17/190 (8%)
Query: 1 MEKPYNKNEGNLENEGKPEDEVEPDDEGKSD-----EEEKPDAEGKTECEGKR------K 49
MEK Y++NEG N+GK E+E +P DE K + E++K + EGKTE +GK K
Sbjct: 1 MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLK 60
Query: 50 AEGEPGDEGQLED-----KGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGD 104
+G+P EG+ ++ +G E +G SE EGKP+ EGKP S+ +P + RAA KRPA D
Sbjct: 61 DKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAED 120
Query: 105 YVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRK-KQKMGGFH 163
VPRKAKRKT++G K+ +E + + + S+E+M+RE ++++ Q+E RK KQK+G F
Sbjct: 121 DVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFL 180
Query: 164 WMQRDVQDPF 173
WMQR++QDPF
Sbjct: 181 WMQRNLQDPF 190
>gi|65505873 transcription elongation factor A (SII)-like 4 [Homo
sapiens]
Length = 215
Score = 157 bits (398), Expect = 4e-39
Identities = 87/190 (45%), Positives = 126/190 (66%), Gaps = 17/190 (8%)
Query: 1 MEKPYNKNEGNLENEGKPEDEVEPDDEGKSD-----EEEKPDAEGKTECEGKR------K 49
MEK Y++NEG N+GK E+E +P DE K + E++K + EGKTE +GK K
Sbjct: 1 MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLK 60
Query: 50 AEGEPGDEGQLED-----KGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGD 104
+G+P EG+ ++ +G E +G SE EGKP+ EGKP S+ +P + RAA KRPA D
Sbjct: 61 DKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAED 120
Query: 105 YVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRK-KQKMGGFH 163
VPRKAKRKT++G K+ +E + + + S+E+M+RE ++++ Q+E RK KQK+G F
Sbjct: 121 DVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFL 180
Query: 164 WMQRDVQDPF 173
WMQR++QDPF
Sbjct: 181 WMQRNLQDPF 190
>gi|55749451 transcription elongation factor A (SII)-like 4 [Homo
sapiens]
Length = 215
Score = 157 bits (398), Expect = 4e-39
Identities = 87/190 (45%), Positives = 126/190 (66%), Gaps = 17/190 (8%)
Query: 1 MEKPYNKNEGNLENEGKPEDEVEPDDEGKSD-----EEEKPDAEGKTECEGKR------K 49
MEK Y++NEG N+GK E+E +P DE K + E++K + EGKTE +GK K
Sbjct: 1 MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLK 60
Query: 50 AEGEPGDEGQLED-----KGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGD 104
+G+P EG+ ++ +G E +G SE EGKP+ EGKP S+ +P + RAA KRPA D
Sbjct: 61 DKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAED 120
Query: 105 YVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRK-KQKMGGFH 163
VPRKAKRKT++G K+ +E + + + S+E+M+RE ++++ Q+E RK KQK+G F
Sbjct: 121 DVPRKAKRKTNKGLAHYLKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFL 180
Query: 164 WMQRDVQDPF 173
WMQR++QDPF
Sbjct: 181 WMQRNLQDPF 190
>gi|17933774 transcription elongation factor A (SII)-like 2 [Homo
sapiens]
Length = 227
Score = 148 bits (374), Expect = 2e-36
Identities = 78/202 (38%), Positives = 123/202 (60%), Gaps = 29/202 (14%)
Query: 1 MEKPYNKNEGNLENEGKPEDEVEPDDEGKSD----------------------------E 32
MEK +N+NEG N+GK ++E +P EGK + +
Sbjct: 1 MEKLFNENEGMPSNQGKIDNEEQPPHEGKPEVACILEDKKLENEGNTENTGKRVEEPLKD 60
Query: 33 EEKPDAEGKTECEGKRKAEGEPGDEGQLEDKGSQEKQGKSEGEGKPQGEGKPASQAKPEG 92
+EKP++ GK + EGK + +G+ +G + +G E+ G++EGEG+P E +P S+ +PE
Sbjct: 61 KEKPESAGKAKGEGKSERKGKSEMQGGSKTEGKPERGGRAEGEGEPDSEREPESEGEPES 120
Query: 93 QPRAAEKRPAGDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEE 152
+ RAA KRPA D +PRKAKRKT++G K +E + + + S+E+M+RE +++R +++
Sbjct: 121 ETRAAGKRPAEDDIPRKAKRKTNKGLAQYLKQYKEAIHDMNFSNEDMIREFDNMARVEDK 180
Query: 153 LRK-KQKMGGFHWMQRDVQDPF 173
RK KQK+G F WMQR++QDPF
Sbjct: 181 RRKSKQKLGAFLWMQRNLQDPF 202
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 56.6 bits (135), Expect = 1e-08
Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 9/136 (6%)
Query: 2 EKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQLE 61
E+ + EG E EG+ E E + EG+ +E E E + E EG+ + EGE EG+ E
Sbjct: 958 EEEEGEGEGEEEGEGEGE---EGEGEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGE 1014
Query: 62 DKGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDRGTDDS 121
++ E +G+ EGE + +GEG+ + EG+ E+ G+ + R+ + +
Sbjct: 1015 EEEEGEVEGEVEGE-EGEGEGE-----EEEGEEEGEEREKEGEGEENRRNREEEEEEEGK 1068
Query: 122 PKDSQEDLQERHLSSE 137
+++ E+ ER E
Sbjct: 1069 YQETGEEENERQDGEE 1084
Score = 55.8 bits (133), Expect = 2e-08
Identities = 45/163 (27%), Positives = 82/163 (50%), Gaps = 12/163 (7%)
Query: 2 EKPYNKNEGNLENEGKPEDEVEPDDEGKSDEE-EKPDAEGKTECEGKRKAEGEPGDEGQL 60
E+ + EG E EG+ E+E + EGK +EE E+ + EG+ E EG+ EGE G+
Sbjct: 896 EEEEGEGEGEEEGEGEGEEE---EGEGKGEEEGEEGEGEGEEE-EGE--GEGEDGEGEGE 949
Query: 61 EDKGS---QEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDRG 117
E++G +E++G+ EGE + +GEG+ E + + G+ + + G
Sbjct: 950 EEEGEWEGEEEEGEGEGEEEGEGEGEEGEGEGEEEEGEGEGEEEEGEEEGEEEGEGEEEG 1009
Query: 118 TDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMG 160
+ ++ + ++ E + EE E G+ +EE +++K G
Sbjct: 1010 EGEGEEEEEGEV-EGEVEGEEGEGE-GEEEEGEEEGEEREKEG 1050
Score = 54.7 bits (130), Expect = 4e-08
Identities = 42/164 (25%), Positives = 82/164 (50%), Gaps = 17/164 (10%)
Query: 13 ENEGKPED---EVEPDDEGKSDEEEKPDAEGKTECEGK-RKAEGEPGDEGQLEDKGSQEK 68
E EG+ ED E E ++ EEE+ + EG+ E EG+ + EGE G+E + E +G +E+
Sbjct: 936 EGEGEGEDGEGEGEEEEGEWEGEEEEGEGEGEEEGEGEGEEGEGE-GEEEEGEGEGEEEE 994
Query: 69 ---QGKSEGEGKPQGEGKPASQAK---------PEGQPRAAEKRPAGDYVPRKAKRKTDR 116
+G+ EGEG+ +GEG+ + + EG+ E+ + R+ + + +
Sbjct: 995 GEEEGEEEGEGEEEGEGEGEEEEEGEVEGEVEGEEGEGEGEEEEGEEEGEEREKEGEGEE 1054
Query: 117 GTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMG 160
+ ++ +E+ + + EE R+ G+ + +++ K G
Sbjct: 1055 NRRNREEEEEEEGKYQETGEEENERQDGEEYKKVSKIKGSVKYG 1098
Score = 54.3 bits (129), Expect = 6e-08
Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 6 NKNEGNLENEGKPEDEVEPDDEGKS-DEEEKPDAEGKTECEGKRKAEGEPGDEGQL---- 60
+K G +E G+ E E+ +E K D EE+ E + + +R E E G E +
Sbjct: 680 DKGRGEMERPGEGEKELAEKEEWKKRDGEEQEQKEREQGHQKERNQEMEEGGEEEHGEGE 739
Query: 61 EDKGSQEKQGKSEGEGKPQGEGK--PASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDRGT 118
E++G +E++ + EGEGK +GEG+ + K EG+ + E R K +
Sbjct: 740 EEEGDREEEEEKEGEGKEEGEGEEVEGEREKEEGERKKEE---------RAGKEEKGEEE 790
Query: 119 DDSPKDSQEDLQERHLSSEEMMR-ECGDVSRAQEELRKKQKMG 160
D + +E+ + R EE E G+V + E ++++ G
Sbjct: 791 GDQGEGEEEETEGRGEEKEEGGEVEGGEVEEGKGEREEEEEEG 833
Score = 53.9 bits (128), Expect = 7e-08
Identities = 39/148 (26%), Positives = 75/148 (50%), Gaps = 4/148 (2%)
Query: 7 KNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPGD-EGQLEDKGS 65
+ EG E EG+ + E +EG+ + EE+ + EG+ E EG+ + E E G+ EG+ E +G
Sbjct: 853 EGEGKGEEEGEEGEGEEEGEEGEGEGEEE-EGEGEGEEEGEGEGEEEEGEGEGEEEGEGE 911
Query: 66 QEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDRGTDDSPKDS 125
E++ + EG+G+ +GE + EG+ + G+ + + + + G + ++
Sbjct: 912 GEEE-EGEGKGEEEGEEGEGEGEEEEGEGEGEDGEGEGEEEEGEWEGEEEEGEGEGEEEG 970
Query: 126 QEDLQERHLSSEEMMREC-GDVSRAQEE 152
+ + +E EE E G+ +EE
Sbjct: 971 EGEGEEGEGEGEEEEGEGEGEEEEGEEE 998
Score = 53.5 bits (127), Expect = 1e-07
Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 14/124 (11%)
Query: 7 KNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQLEDKGSQ 66
+ E E EG+ E+ ++EG+ +EEE EGK E EG+ EGE +EG+ + +
Sbjct: 826 REEEEEEGEGEEEEGEGEEEEGEGEEEE---GEGKGEEEGE---EGEGEEEGEEGEGEGE 879
Query: 67 EKQGKSEGEGKPQGEGKP---ASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDRGTDDSPK 123
E++G+ EGE + +GEG+ + + EG+ E+ G K + + + G + +
Sbjct: 880 EEEGEGEGEEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEG-----KGEEEGEEGEGEGEE 934
Query: 124 DSQE 127
+ E
Sbjct: 935 EEGE 938
Score = 50.8 bits (120), Expect = 6e-07
Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 6 NKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQLEDKGS 65
++ E N E E E+E +E + D EE+ + EG EGK + EGE + + +++G
Sbjct: 719 HQKERNQEMEEGGEEEHGEGEEEEGDREEEEEKEG----EGKEEGEGEEVEGEREKEEGE 774
Query: 66 QEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYV---------PRKAKRKTDR 116
++K+ ++ E K + EG + E + R EK G+ R+ + +
Sbjct: 775 RKKEERAGKEEKGEEEGDQGEGEEEETEGRGEEKEEGGEVEGGEVEEGKGEREEEEEEGE 834
Query: 117 GTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEE 152
G ++ + +E+ + E E G+ +EE
Sbjct: 835 GEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEGEEE 870
Score = 50.1 bits (118), Expect = 1e-06
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 7/145 (4%)
Query: 13 ENEGKPEDEVEPDDEGKSDEEEKPDAEGKTEC-EGKRKAEGEPGDEGQLEDKGSQ----E 67
E EG E+E E + EGK +E E + EG+ E EG+RK E G E + E++G Q E
Sbjct: 740 EEEGDREEEEEKEGEGK-EEGEGEEVEGEREKEEGERKKEERAGKEEKGEEEGDQGEGEE 798
Query: 68 KQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDRGTDDSPKDSQE 127
++ + GE K +G G+ EG+ E+ G+ + + + + G + + +
Sbjct: 799 EETEGRGEEKEEG-GEVEGGEVEEGKGEREEEEEEGEGEEEEGEGEEEEGEGEEEEGEGK 857
Query: 128 DLQERHLSSEEMMRECGDVSRAQEE 152
+E E E G+ +EE
Sbjct: 858 GEEEGEEGEGEEEGEEGEGEGEEEE 882
Score = 48.5 bits (114), Expect = 3e-06
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 11/156 (7%)
Query: 2 EKPYNKNEGNLENEGKPEDEVEPDDEGKSDEE-EKPDAEGKTECEGKRKAEGEPGDEGQL 60
E+ + EG E E + E + EG+ +EE E E + E EG+ + EGE G+E +
Sbjct: 859 EEEGEEGEGEEEGEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGEGEEEGEGE-GEEEEG 917
Query: 61 EDKGSQE-KQGKSEG---EGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDR 116
E KG +E ++G+ EG EG+ +GE + EG+ E+ G+ + + +
Sbjct: 918 EGKGEEEGEEGEGEGEEEEGEGEGEDGEGEGEEEEGEWEGEEEEGEGE-----GEEEGEG 972
Query: 117 GTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEE 152
++ + +E+ E EE E + +EE
Sbjct: 973 EGEEGEGEGEEEEGEGEGEEEEGEEEGEEEGEGEEE 1008
Score = 47.8 bits (112), Expect = 5e-06
Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 4/133 (3%)
Query: 2 EKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQLE 61
E+ + EG E E + E EVE + EG+ E E + EG+ E E +R+ EGE G+E +
Sbjct: 1001 EEGEGEEEGEGEGEEEEEGEVEGEVEGEEGEGEGEEEEGEEEGE-EREKEGE-GEENRRN 1058
Query: 62 DKGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDRGTDDS 121
+ +E++GK + G+ + E + + K + + + K G + + K T+ +
Sbjct: 1059 REEEEEEEGKYQETGEEENERQDGEEYKKVSKIKGSVK--YGKHKTYQKKSVTNTQGNGK 1116
Query: 122 PKDSQEDLQERHL 134
+ S+ +Q + L
Sbjct: 1117 EQRSKMPVQSKRL 1129
Score = 47.4 bits (111), Expect = 7e-06
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 1 MEKPYNKNEGNLENE---GKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPGDE 57
+E K EG + E GK E E D+G+ +EEE TE G+ K EG +
Sbjct: 764 VEGEREKEEGERKKEERAGKEEKGEEEGDQGEGEEEE-------TEGRGEEKEEGGEVEG 816
Query: 58 GQLEDKGSQEKQGKSEGEGKP---QGEGKPASQAKPEGQPRAAEKRPAGD 104
G++E+ + ++ + EGEG+ +GE + + EG+ + E+ G+
Sbjct: 817 GEVEEGKGEREEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGE 866
Score = 45.1 bits (105), Expect = 3e-05
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 6/153 (3%)
Query: 2 EKPYNKNEGNLENEGKPE---DEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPGDEG 58
E+ + E E EGK E +EVE + E + E +K + GK E +G+ + + G+E
Sbjct: 741 EEGDREEEEEKEGEGKEEGEGEEVEGEREKEEGERKKEERAGKEE-KGEEEGDQGEGEEE 799
Query: 59 QLEDKGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDRGT 118
+ E +G ++++G E EG EGK + + E + E+ G+ + + + G
Sbjct: 800 ETEGRGEEKEEG-GEVEGGEVEEGK-GEREEEEEEGEGEEEEGEGEEEEGEGEEEEGEGK 857
Query: 119 DDSPKDSQEDLQERHLSSEEMMRECGDVSRAQE 151
+ + E +E E E G+ +E
Sbjct: 858 GEEEGEEGEGEEEGEEGEGEGEEEEGEGEGEEE 890
Score = 41.2 bits (95), Expect = 5e-04
Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 13/148 (8%)
Query: 9 EGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGK---RKAEGEPGDEGQLEDKGS 65
EG+ E ++E E ++ K E + EG+ E K +K +GE ++ + E
Sbjct: 661 EGSSGAEHWQDEEREKGEKDKGRGEMERPGEGEKELAEKEEWKKRDGEEQEQKEREQGHQ 720
Query: 66 QEK-QGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDRGTDDSPKD 124
+E+ Q EG + GEG+ + E + + E + G+ + +R+ + G
Sbjct: 721 KERNQEMEEGGEEEHGEGEEEEGDREEEEEKEGEGKEEGEGEEVEGEREKEEG------- 773
Query: 125 SQEDLQERHLSSEEMMRECGDVSRAQEE 152
E +E EE E GD +EE
Sbjct: 774 --ERKKEERAGKEEKGEEEGDQGEGEEE 799
Score = 40.0 bits (92), Expect = 0.001
Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 30/165 (18%)
Query: 2 EKPYNKNEGNLENEG--KPEDEVEPDD--------EGKS----DEEEKPDAEGKTECEGK 47
E+ NE N++ G K + E+ DD EGK+ + E+ P+ G CE
Sbjct: 603 EQEVEANEENVKVHGGRKEKTEILSDDLTDKAEVSEGKAKSVGEAEDGPEGRGDGTCE-- 660
Query: 48 RKAEGEPGDEGQLEDKGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVP 107
EG G E +++ + ++ K GE + GEG+ K E + R E+
Sbjct: 661 ---EGSSGAEHWQDEEREKGEKDKGRGEMERPGEGEKELAEKEEWKKRDGEE-------- 709
Query: 108 RKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEE 152
++ K + + ++ +E +E H EE E GD +E+
Sbjct: 710 QEQKEREQGHQKERNQEMEEGGEEEHGEGEE---EEGDREEEEEK 751
Score = 39.7 bits (91), Expect = 0.001
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 7/142 (4%)
Query: 2 EKPYNKNEGNLENEGKPEDEVEPDDEGKSDEE--EKPDAEGKTECEGKRKAEGEPGDEGQ 59
++ + K +G E E K ++ + + EE E+ EG+ E EG R+ E E EG+
Sbjct: 699 KEEWKKRDGE-EQEQKEREQGHQKERNQEMEEGGEEEHGEGEEE-EGDREEEEEKEGEGK 756
Query: 60 LEDKGS--QEKQGKSEGEGKPQGEGKPASQAKPEG-QPRAAEKRPAGDYVPRKAKRKTDR 116
E +G + ++ K EGE K + + + EG Q E+ G ++ + +
Sbjct: 757 EEGEGEEVEGEREKEEGERKKEERAGKEEKGEEEGDQGEGEEEETEGRGEEKEEGGEVEG 816
Query: 117 GTDDSPKDSQEDLQERHLSSEE 138
G + K +E+ +E EE
Sbjct: 817 GEVEEGKGEREEEEEEGEGEEE 838
Score = 35.4 bits (80), Expect = 0.028
Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 13/149 (8%)
Query: 13 ENEGKPEDEVEPDDEGKSDEEEKPDA-EGKTECEGKRKAEGEPGDEGQLEDKGSQEKQGK 71
E E E E D +G EE++ +A E + G RK + E + + E + K
Sbjct: 583 EVEIPEEKEGAEDSKGNGIEEQEVEANEENVKVHGGRKEKTEILSDDLTDKAEVSEGKAK 642
Query: 72 SEGEGK--PQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDRGTDDSPKDSQEDL 129
S GE + P+G G + EG A + D K ++ RG + P + +++L
Sbjct: 643 SVGEAEDGPEGRGDGTCE---EGSSGAEHWQ---DEEREKGEKDKGRGEMERPGEGEKEL 696
Query: 130 QERHLSSEEMMRECGDVSRAQEELRKKQK 158
E+ EE + G+ +E + QK
Sbjct: 697 AEK----EEWKKRDGEEQEQKEREQGHQK 721
>gi|13540523 nucleosomal binding protein 1 [Homo sapiens]
Length = 282
Score = 54.7 bits (130), Expect = 4e-08
Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 20/147 (13%)
Query: 7 KNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEG-------KRKAEGEPGDEGQ 59
KNE + E + + E + GK D++EK + +GK + G K K +G+ G++G+
Sbjct: 124 KNEEEDQKEDEEDQNEEKGEAGKEDKDEKGEEDGKEDKNGNEKGEDAKEKEDGKKGEDGK 183
Query: 60 L-----EDKGSQEKQG---KSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAK 111
++KG EK+ K G+GK +GK K + E D R+
Sbjct: 184 GNGEDGKEKGEDEKEEEDRKETGDGKENEDGKEKGDKKEGKDVKVKE-----DEKEREDG 238
Query: 112 RKTDRGTDDSPKDSQEDLQERHLSSEE 138
++ + G ++ +EDL+E EE
Sbjct: 239 KEDEGGNEEEAGKEKEDLKEEEEGKEE 265
Score = 44.3 bits (103), Expect = 6e-05
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 14/104 (13%)
Query: 2 EKPYNKNEGNLENEGKP--EDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPG---- 55
E K +G +GK ED E ++ K +E+ K +GK +GK K + + G
Sbjct: 168 EDAKEKEDGKKGEDGKGNGEDGKEKGEDEKEEEDRKETGDGKENEDGKEKGDKKEGKDVK 227
Query: 56 --------DEGQLEDKGSQEKQGKSEGEGKPQGEGKPASQAKPE 91
++G+ ++ G++E+ GK + + K + EGK + K +
Sbjct: 228 VKEDEKEREDGKEDEGGNEEEAGKEKEDLKEEEEGKEEDEIKED 271
Score = 38.5 bits (88), Expect = 0.003
Identities = 41/183 (22%), Positives = 73/183 (39%), Gaps = 25/183 (13%)
Query: 1 MEKPYNKNEGNLENE------------GKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKR 48
+E+ YN+N N E + E+ +E E +++E AE K E E ++
Sbjct: 72 VEEDYNENAKNGEAKITEAPASEKEIVEVKEENIEDATEKGGEKKEAVAAEVKNEEEDQK 131
Query: 49 KAEG----EPGDEGQLEDKGSQEKQGKSEGEGKPQGE-------GKPASQAKPEGQPRAA 97
+ E E G+ G+ + E+ GK + G +GE GK K G+
Sbjct: 132 EDEEDQNEEKGEAGKEDKDEKGEEDGKEDKNGNEKGEDAKEKEDGKKGEDGKGNGEDGKE 191
Query: 98 EKRPAGDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECG--DVSRAQEELRK 155
+ + RK D K +++ ++ + +E RE G D +EE K
Sbjct: 192 KGEDEKEEEDRKETGDGKENEDGKEKGDKKEGKDVKVKEDEKEREDGKEDEGGNEEEAGK 251
Query: 156 KQK 158
+++
Sbjct: 252 EKE 254
Score = 33.5 bits (75), Expect = 0.10
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 9 EGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQLEDKGSQEK 68
+G +GK + + + + K E+EK +GK E E G+E E+ G +++
Sbjct: 207 DGKENEDGKEKGDKKEGKDVKVKEDEKEREDGK---------EDEGGNE---EEAGKEKE 254
Query: 69 QGKSEGEGKPQGEGKPASQAKPEGQ 93
K E EGK + E K K E Q
Sbjct: 255 DLKEEEEGKEEDEIKEDDGKKEEPQ 279
>gi|55749466 transcription elongation factor A (SII)-like 8 [Homo
sapiens]
Length = 117
Score = 53.1 bits (126), Expect = 1e-07
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 73 EGEGKPQGEGKPASQAKPEGQPRAAE--KRPAGDYVPRKAKRKTDRGTDDSPKDSQEDLQ 130
E EGKPQ K E P+ AE +P+ + V ++A+ G + + +ED
Sbjct: 7 ENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQGFKEDTP 66
Query: 131 ERHLSSEEMMRECGDVSRAQEELRK-KQKMGGFHWMQR 167
RHL EEM+R ++ R +EE+R+ + K HW QR
Sbjct: 67 VRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQR 104
>gi|23503247 transcription elongation factor A (SII)-like 8 [Homo
sapiens]
Length = 117
Score = 53.1 bits (126), Expect = 1e-07
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 73 EGEGKPQGEGKPASQAKPEGQPRAAE--KRPAGDYVPRKAKRKTDRGTDDSPKDSQEDLQ 130
E EGKPQ K E P+ AE +P+ + V ++A+ G + + +ED
Sbjct: 7 ENEGKPQNMPKAEEDRPLEDVPQEAEGNPQPSEEGVSQEAEGNPRGGPNQPGQGFKEDTP 66
Query: 131 ERHLSSEEMMRECGDVSRAQEELRK-KQKMGGFHWMQR 167
RHL EEM+R ++ R +EE+R+ + K HW QR
Sbjct: 67 VRHLDPEEMIRGVDELERLREEIRRVRNKFVMMHWKQR 104
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 51.2 bits (121), Expect = 5e-07
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 1 MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQL 60
+E P + E E+EG E E + + +S+ E DAEG+ + E + E +E Q
Sbjct: 2116 IEAPETEGEAQPESEGIEAPEAEGEAQPESEGVEAQDAEGEAQPESEGIEAQEAEEEAQP 2175
Query: 61 EDKGSQEKQGKSEGEGKPQGEGKPASQAKPEGQP 94
E +G + + +EGE +P+ EG A +A+ E QP
Sbjct: 2176 ELEGVEAPE--AEGEAQPESEGIEAPEAEGEAQP 2207
Score = 50.8 bits (120), Expect = 6e-07
Identities = 49/198 (24%), Positives = 84/198 (42%), Gaps = 45/198 (22%)
Query: 1 MEKPYNKNEGNLENEG--KPE-----DEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGE 53
+E P + E E+EG PE E E + + +S++ E P+AEG+ + E + E
Sbjct: 1835 IEAPEAEGEAQPESEGVEAPEAEGDAQEAEGEAQPESEDVEAPEAEGEAQPESEDVETPE 1894
Query: 54 PGDEGQLEDKGSQ----EKQGK----------SEGEGKPQGEGKPASQAKPEGQPRAAEK 99
E Q E +G++ EK+ + +EGE +P+ EG A +A+ Q +
Sbjct: 1895 AEWEVQPESEGAEAPEAEKEAQPETESVEALETEGEDEPESEGAEAQEAEEAAQEAEGQT 1954
Query: 100 RPAGDYVPRKAKRKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKM 159
+P + + +SQE + EE E DV + E+ ++
Sbjct: 1955 QPESEVI-----------------ESQE-------AEEEAQPESEDVEALEVEVETQEAE 1990
Query: 160 GGFHWMQRDVQDPFAQGD 177
G DV+ P A+G+
Sbjct: 1991 GEAQPESEDVEAPEAEGE 2008
Score = 50.4 bits (119), Expect = 8e-07
Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
Query: 2 EKPYNKNEGNL-ENEGKPEDEVEPDDEGKSDEEEKPDAEG--KTECEGK-RKAEG--EPG 55
E+ + EG + E EG+ E E D +++ E +P++EG E EG+ +KAEG P
Sbjct: 2061 EEEAQEAEGEVQEAEGEAHPESEDVDAQEAEGEAQPESEGVEAPEAEGEAQKAEGIEAPE 2120
Query: 56 DEGQLEDKGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRA 96
EG+ + + + ++EGE +P+ EG A A+ E QP +
Sbjct: 2121 TEGEAQPESEGIEAPEAEGEAQPESEGVEAQDAEGEAQPES 2161
Score = 49.3 bits (116), Expect = 2e-06
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 24/146 (16%)
Query: 1 MEKPYNKNEGNLENEG----KPEDEVEPDDEG----KSDEEEKPDAEG--KTECEGKRKA 50
+E P + E E+EG E E +P+ EG +++EE +P+ EG E EG+ +
Sbjct: 2132 IEAPEAEGEAQPESEGVEAQDAEGEAQPESEGIEAQEAEEEAQPELEGVEAPEAEGEAQP 2191
Query: 51 EGE------------PGDEGQLEDKGSQEKQGKSEGEGKP--QGEGKPASQAKPEGQPRA 96
E E P EG + +E Q + EG P +GE +P S+ + +G+ +
Sbjct: 2192 ESEGIEAPEAEGEAQPELEGVEAPEAEEEAQPEPEGVETPEAEGEAQPESEGETQGEKKG 2251
Query: 97 AEKRPAGDYVPRKAKRKTDRGTDDSP 122
+ + GD +A + +D P
Sbjct: 2252 SPQVSLGDGQSEEASESSSPVPEDRP 2277
Score = 48.9 bits (115), Expect = 2e-06
Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 32/183 (17%)
Query: 9 EGNLENEGKPEDEVEPDDEGKSDEEEKPDAEG---------KTECEGKRKAEGE----PG 55
E E EG+ + E E + +++EE +P++E E EG+ + E E P
Sbjct: 1945 EAAQEAEGQTQPESEVIESQEAEEEAQPESEDVEALEVEVETQEAEGEAQPESEDVEAPE 2004
Query: 56 DEGQLEDKGSQEKQGKSEG-EGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKT 114
EG++++ +E Q +S+G E +P+ EG+ A + + E Q + +P D V +
Sbjct: 2005 AEGEMQE-AEEEAQPESDGVEAQPKSEGEEAQEVEGETQKTEGDAQPESDGVEAP---EA 2060
Query: 115 DRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHWMQRDVQDPFA 174
+ ++ + QE E H SE++ D A+ E + + + V+ P A
Sbjct: 2061 EEEAQEAEGEVQEAEGEAHPESEDV-----DAQEAEGEAQPESE---------GVEAPEA 2106
Query: 175 QGD 177
+G+
Sbjct: 2107 EGE 2109
Score = 47.0 bits (110), Expect = 9e-06
Identities = 34/138 (24%), Positives = 67/138 (48%), Gaps = 12/138 (8%)
Query: 9 EGNLENEGKPEDEVEPDDEG-----KSDEEEKPDAEG---KTECEGKRKAEGEPGDEGQL 60
EG ++ + E+E +P+ +G KS+ EE + EG KTE + + +++G E +
Sbjct: 2006 EGEMQ---EAEEEAQPESDGVEAQPKSEGEEAQEVEGETQKTEGDAQPESDGVEAPEAEE 2062
Query: 61 EDKGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRA-AEKRPAGDYVPRKAKRKTDRGTD 119
E + ++ + ++EGE P+ E A +A+ E QP + + P + +KA+ T+
Sbjct: 2063 EAQEAEGEVQEAEGEAHPESEDVDAQEAEGEAQPESEGVEAPEAEGEAQKAEGIEAPETE 2122
Query: 120 DSPKDSQEDLQERHLSSE 137
+ E ++ E
Sbjct: 2123 GEAQPESEGIEAPEAEGE 2140
Score = 45.4 bits (106), Expect = 3e-05
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 1 MEKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGK----RKAEGE--P 54
+E K EG+ + E + E ++E + E E +AEG+ E + ++AEGE P
Sbjct: 2037 VEGETQKTEGDAQPESDGVEAPEAEEEAQEAEGEVQEAEGEAHPESEDVDAQEAEGEAQP 2096
Query: 55 GDEGQLEDKGSQEKQ-------GKSEGEGKPQGEGKPASQAKPEGQPRA 96
EG + E Q ++EGE +P+ EG A +A+ E QP +
Sbjct: 2097 ESEGVEAPEAEGEAQKAEGIEAPETEGEAQPESEGIEAPEAEGEAQPES 2145
Score = 43.9 bits (102), Expect = 8e-05
Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 13/112 (11%)
Query: 1 MEKPYNKNEGNLENEG----KPEDEVEPDDEG----KSDEEEKPDAEGKTECEGKRKAEG 52
+E P + E E+EG + E E +P+ EG +++EE +P+ EG E + +A+
Sbjct: 2180 VEAPEAEGEAQPESEGIEAPEAEGEAQPELEGVEAPEAEEEAQPEPEGVETPEAEGEAQP 2239
Query: 53 EPGDEGQLEDKGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGD 104
E E Q E KGS + S G+G+ + E +S PE +P P GD
Sbjct: 2240 ESEGETQGEKKGSPQ---VSLGDGQSE-EASESSSPVPEDRP-TPPPSPGGD 2286
Score = 34.3 bits (77), Expect = 0.061
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 12/92 (13%)
Query: 13 ENEGKPEDEVEPDD----EGKSDEEEKPDAEGKTECEGKRKAEG------EPGDEGQLED 62
E EG E+ V+ ++ EG +E + + +TE EG+++ E E G EG L++
Sbjct: 1311 EGEGLQEEAVQLEETKTEEGLQEEGVQLEETKETEGEGQQEEEAQLEEIEETGGEG-LQE 1369
Query: 63 KGSQEKQGKSEGEGKPQGEGKPASQAKPEGQP 94
+G Q ++ K EG QGE K EG P
Sbjct: 1370 EGVQLEEVKEGPEGGLQGEALEEG-LKEEGLP 1400
Score = 33.5 bits (75), Expect = 0.10
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 10 GNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQLEDKGSQEKQ 69
G E EG E E + G + + +G+ G + G EG + E Q
Sbjct: 1788 GEAEQEG--EGISERGETGGQGSGHEDNLQGEAAAGGDQDPGQSDGAEGIEAPEAEGEAQ 1845
Query: 70 GKSEGEGKPQGEGKPASQAKPEGQPRAAE 98
+SEG P+ EG A +A+ E QP + +
Sbjct: 1846 PESEGVEAPEAEG-DAQEAEGEAQPESED 1873
Score = 32.0 bits (71), Expect = 0.30
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 46 GKRKAEGEPGDEGQLEDKGSQEKQGKSEGEGKPQGEGKP--ASQAKPEGQPRAAEKRPAG 103
G R E +PGD+ LE G + G+ EG P + +P A + P++ E P G
Sbjct: 986 GLRGPEVDPGDDHSLEGLGEPAQAGQQSLEGDPGQDPEPEGALLGSSDTGPQSGEGVPQG 1045
Query: 104 DYVPRKAKRKTDRGTD-DSP---KDSQEDLQERHLSSEEMMR 141
++ + G D ++P + S L R +S ++MR
Sbjct: 1046 AAPEGVSEAPAEAGADREAPAGCRVSLRALPGRVSASTQIMR 1087
Score = 30.0 bits (66), Expect = 1.2
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 19/133 (14%)
Query: 13 ENEGKPEDEVEPDDEGKSDEEEKPDA----EGKTECEGKRKAEGEPGDEGQLEDKGSQEK 68
EN + E ++E EG E + +A E KTE EG ++ + + + E +G QE+
Sbjct: 1294 ENTVQEEVQLEETKEGTEGEGLQEEAVQLEETKTE-EGLQEEGVQLEETKETEGEGQQEE 1352
Query: 69 QGKSE------GEGKPQGEGKPASQAK--PEG--QPRAAEKRPAGDYVPRKAK---RKTD 115
+ + E GEG Q EG + K PEG Q A E+ + +P + ++
Sbjct: 1353 EAQLEEIEETGGEGL-QEEGVQLEEVKEGPEGGLQGEALEEGLKEEGLPEEGSVHGQELS 1411
Query: 116 RGTDDSPKDSQED 128
+ K SQED
Sbjct: 1412 EASSPDGKGSQED 1424
Score = 28.9 bits (63), Expect = 2.6
Identities = 31/139 (22%), Positives = 52/139 (37%), Gaps = 15/139 (10%)
Query: 12 LENEGKPEDEVEPDDEG--------KSDEEEKPDAEGKTECEGKRKAEGEPGDEGQLEDK 63
L+ EG +EV+ EG + +EE EG + +A G Q +D
Sbjct: 1367 LQEEGVQLEEVKEGPEGGLQGEALEEGLKEEGLPEEGSVHGQELSEASSPDGKGSQEDDP 1426
Query: 64 GSQEKQGKSEGEGKP---QGEGKPASQAK--PEGQPRAAEKRPAGDYVP--RKAKRKTDR 116
+E+ G++ +P +G +P E P A+E++ P K T
Sbjct: 1427 VQEEEAGRASASAEPCPAEGTEEPTEPPSHLSETDPSASERQSGSQLEPGLEKPPGATMM 1486
Query: 117 GTDDSPKDSQEDLQERHLS 135
G + + + ER S
Sbjct: 1487 GQEHTQAQPTQGAAERSSS 1505
Score = 28.9 bits (63), Expect = 2.6
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 20 DEVEPDDEGKSDEEEKPDAE--GKTECEGKRKAE-GEPGDEGQLEDKGSQEKQ--GKSEG 74
D + + EGK+ E G+ E EG+ +E GE G +G + Q + G +
Sbjct: 1766 DAMAQEREGKTHNSETSAGSELGEAEQEGEGISERGETGGQGSGHEDNLQGEAAAGGDQD 1825
Query: 75 EGKPQG-EGKPASQAKPEGQPRA 96
G+ G EG A +A+ E QP +
Sbjct: 1826 PGQSDGAEGIEAPEAEGEAQPES 1848
>gi|21361639 DIPB protein [Homo sapiens]
Length = 344
Score = 50.1 bits (118), Expect = 1e-06
Identities = 49/163 (30%), Positives = 74/163 (45%), Gaps = 20/163 (12%)
Query: 7 KNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKA--EGEPGDEGQLED-- 62
K E ++ E + E E E +E +S+EE + + E +TE E + ++ E E E ++ED
Sbjct: 78 KEEAEVKVEQEREIESEAGEESESEEESESEEESETEEESEDESDEESEEDSEEEMEDEQ 137
Query: 63 KGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRK-TDRGTDDS 121
+ E+ + EGE + +GE + S+ PE + A R AKRK D G D S
Sbjct: 138 ESEAEEDNQEEGESEAEGETEAESEFDPEIEMEA----------ERVAKRKCPDHGLDLS 187
Query: 122 PKDSQEDLQ----ERHLSSEEMMRECGDVSRAQEELRKKQKMG 160
QED Q + + + A EELR K G
Sbjct: 188 TY-CQEDRQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGG 229
Score = 41.2 bits (95), Expect = 5e-04
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 2 EKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQLE 61
E+ ++ E E E + E+E E +SDEE + D+E + E E + +AE + +EG+ E
Sbjct: 97 EESESEEESESEEESETEEE----SEDESDEESEEDSEEEMEDEQESEAEEDNQEEGESE 152
Query: 62 DKGSQEKQGKSEGEGKPQGE 81
+G E + + + E + + E
Sbjct: 153 AEGETEAESEFDPEIEMEAE 172
Score = 30.4 bits (67), Expect = 0.89
Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 5/136 (3%)
Query: 20 DEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQLED--KGSQEKQGKSEGEGK 77
DE EPD+ ++E + G C +A + L + GSQ ++GEG
Sbjct: 19 DECEPDEAPGAEEVCREC--GFCYCRRHAEAHRQKFLSHHLAEYVHGSQAWTPPADGEGA 76
Query: 78 PQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKT-DRGTDDSPKDSQEDLQERHLSS 136
+ E + + + E + A E+ + + + + +T + D+S ++S+ED +E
Sbjct: 77 GKEEAEVKVEQEREIESEAGEESESEEESESEEESETEEESEDESDEESEEDSEEEMEDE 136
Query: 137 EEMMRECGDVSRAQEE 152
+E E + + E
Sbjct: 137 QESEAEEDNQEEGESE 152
Score = 29.6 bits (65), Expect = 1.5
Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 19/104 (18%)
Query: 50 AEGEPGDEGQLEDKGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRK 109
A+GE + + E K QE++ +SE + + E + S+ + E +
Sbjct: 71 ADGEGAGKEEAEVKVEQEREIESEAGEESESEEESESEEESETE---------------- 114
Query: 110 AKRKTDRGTDDSPKDSQEDLQ-ERHLSSEEMMRECGDVSRAQEE 152
+ D ++S +DS+E+++ E+ +EE +E G+ S A+ E
Sbjct: 115 -EESEDESDEESEEDSEEEMEDEQESEAEEDNQEEGE-SEAEGE 156
>gi|34482047 adaptor-related protein complex 3, beta 2 subunit [Homo
sapiens]
Length = 1082
Score = 49.3 bits (116), Expect = 2e-06
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 14/127 (11%)
Query: 11 NLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQLEDKGSQEKQG 70
N E + E D EG+S E D++ ++E E K+ E G + S E
Sbjct: 666 NREKRKEKEKPFYSDSEGESGPTESADSDPESESESDSKSSSESG-----SGESSSESDN 720
Query: 71 KSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDRGTDDSPKDSQEDLQ 130
+ + E + +G G + Q++ +G+ + +K P +RK + + D DS
Sbjct: 721 EDQDEDEEKGRGSESEQSEEDGKRKTKKKVP---------ERKGEASSSDEGSDSSSSSS 771
Query: 131 ERHLSSE 137
E ++SE
Sbjct: 772 ESEMTSE 778
Score = 42.7 bits (99), Expect = 2e-04
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 10 GNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGK---RKAEGEPGDEGQLEDKGSQ 66
G +E ED+ E +++G+ E E+ + +GK + + K RK E DEG S
Sbjct: 712 GESSSESDNEDQDEDEEKGRGSESEQSEEDGKRKTKKKVPERKGEASSSDEGSDSSSSSS 771
Query: 67 EKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPA 102
E + SE E + + +PAS ++ P +++ PA
Sbjct: 772 ESEMTSESE---EEQLEPASWSRK--TPPSSKSAPA 802
>gi|20270337 Leo1, Paf1/RNA polymerase II complex component, homolog
[Homo sapiens]
Length = 666
Score = 49.3 bits (116), Expect = 2e-06
Identities = 32/146 (21%), Positives = 65/146 (44%), Gaps = 17/146 (11%)
Query: 2 EKPYNKNEGNLENEGKPEDEVEPDDE--GKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQ 59
++ + + G+ +E + ++ DDE G+ D+ ++ D E + + +A+G DE +
Sbjct: 118 DEGHRSDGGSHHSEAEGSEKAHSDDEKWGREDKSDQSDDEKIQNSDDEERAQG--SDEDK 175
Query: 60 LEDKGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDRGTD 119
L++ EK ++ E +PQ Q E + + ++RP +
Sbjct: 176 LQNSDDDEKMQNTDDEERPQLSDDERQQLSEEEKANSDDERPVA-------------SDN 222
Query: 120 DSPKDSQEDLQERHLSSEEMMRECGD 145
D K + +D ++ LS EE M+ D
Sbjct: 223 DDEKQNSDDEEQPQLSDEEKMQNSDD 248
Score = 38.5 bits (88), Expect = 0.003
Identities = 33/159 (20%), Positives = 67/159 (42%), Gaps = 23/159 (14%)
Query: 15 EGKPEDEVEPDDEGK----SDEEEKPDAEGKTECEGKRKAEGEPGDEGQLEDKGSQEKQG 70
+G ED+++ D+ + +D+EE+P + + + DE + EKQ
Sbjct: 169 QGSDEDKLQNSDDDEKMQNTDDEERPQLSDDERQQLSEEEKANSDDERPVASDNDDEKQN 228
Query: 71 KSEGEGKPQGEGKPASQAKPEGQPRAA--EKRPAGDYVPRKAKRKTDRGTD--------- 119
S+ E +PQ + Q + +P+A+ E R + D + K ++ RG+D
Sbjct: 229 -SDDEEQPQLSDEEKMQNSDDERPQASDEEHRHSDDEEEQDHKSESARGSDSEDEVLRMK 287
Query: 120 -------DSPKDSQEDLQERHLSSEEMMRECGDVSRAQE 151
DS DS ++ + + + ++ D+S +
Sbjct: 288 RKNAIASDSEADSDTEVPKDNSGTMDLFGGADDISSGSD 326
Score = 35.4 bits (80), Expect = 0.028
Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 10/139 (7%)
Query: 14 NEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQ----------LEDK 63
++ E E + D G + ++ +A + G + E GD GQ ED+
Sbjct: 10 SDADSEAERKDSDSGSDSDSDQENAASGSNASGSESDQDERGDSGQPSNKELFGDDSEDE 69
Query: 64 GSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDRGTDDSPK 123
G+ G + + + ++ E + + +G P + + R S
Sbjct: 70 GASHHSGSDNHSERSDNRSEASERSDHEDNDPSDVDQHSGSEAPNDDEDEGHRSDGGSHH 129
Query: 124 DSQEDLQERHLSSEEMMRE 142
E ++ H E+ RE
Sbjct: 130 SEAEGSEKAHSDDEKWGRE 148
Score = 30.8 bits (68), Expect = 0.68
Identities = 37/176 (21%), Positives = 61/176 (34%), Gaps = 33/176 (18%)
Query: 2 EKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTE---------CEGKRK--- 49
E+P +E ++N + ++ SD+EE+ D + ++ KRK
Sbjct: 233 EQPQLSDEEKMQNSDDERPQASDEEHRHSDDEEEQDHKSESARGSDSEDEVLRMKRKNAI 292
Query: 50 ---AEGEPGDEGQLEDKGSQEKQG-------KSEGEGKPQGEGKPASQAKPEGQPRAAEK 99
+E + E ++ G+ + G S+GE KP G+P + + E
Sbjct: 293 ASDSEADSDTEVPKDNSGTMDLFGGADDISSGSDGEDKPPTPGQPVDENGLPQDQQEEEP 352
Query: 100 RPAGDYVPRKAKRKTDRGTD-----------DSPKDSQEDLQERHLSSEEMMRECG 144
P K TD G D P+ E EEM+ E G
Sbjct: 353 IPETRIEVEIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEG 408
Score = 27.7 bits (60), Expect = 5.7
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 7 KNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQLEDKGSQ 66
+ + N ++E +P D++ SD+EE+P + + + + DE +
Sbjct: 207 EEKANSDDE-RPVASDNDDEKQNSDDEEQPQLSDEEKMQNSDDERPQASDEEHRHSDDEE 265
Query: 67 EKQGKSE 73
E+ KSE
Sbjct: 266 EQDHKSE 272
>gi|55743140 WW domain binding protein 5 [Homo sapiens]
Length = 104
Score = 49.3 bits (116), Expect = 2e-06
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Query: 63 KGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDRGTDDSP 122
K Q+ +GK E E +P+ E +P + KPE + + E+ KAK S
Sbjct: 2 KSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEE--------AKAKGTFRERLIQSL 53
Query: 123 KDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHW 164
++ +ED+ RHLS+E+M RE V E R + K+ W
Sbjct: 54 QEFKEDIHNRHLSNEDMFRE---VDEIDEIRRVRNKLIVMRW 92
Score = 38.5 bits (88), Expect = 0.003
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 3 KPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTE 43
K K EG ENE +P+ E EP E K +EEEK + E K +
Sbjct: 2 KSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAK 42
Score = 38.5 bits (88), Expect = 0.003
Identities = 19/35 (54%), Positives = 22/35 (62%)
Query: 15 EGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRK 49
EGKPE+E EP E + EEKP+ E K E E K K
Sbjct: 8 EGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAK 42
>gi|55743147 WW domain binding protein 5 [Homo sapiens]
Length = 104
Score = 49.3 bits (116), Expect = 2e-06
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Query: 63 KGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDRGTDDSP 122
K Q+ +GK E E +P+ E +P + KPE + + E+ KAK S
Sbjct: 2 KSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEE--------AKAKGTFRERLIQSL 53
Query: 123 KDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHW 164
++ +ED+ RHLS+E+M RE V E R + K+ W
Sbjct: 54 QEFKEDIHNRHLSNEDMFRE---VDEIDEIRRVRNKLIVMRW 92
Score = 38.5 bits (88), Expect = 0.003
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 3 KPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTE 43
K K EG ENE +P+ E EP E K +EEEK + E K +
Sbjct: 2 KSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAK 42
Score = 38.5 bits (88), Expect = 0.003
Identities = 19/35 (54%), Positives = 22/35 (62%)
Query: 15 EGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRK 49
EGKPE+E EP E + EEKP+ E K E E K K
Sbjct: 8 EGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAK 42
>gi|10047100 WW domain binding protein 5 [Homo sapiens]
Length = 104
Score = 49.3 bits (116), Expect = 2e-06
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Query: 63 KGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDRGTDDSP 122
K Q+ +GK E E +P+ E +P + KPE + + E+ KAK S
Sbjct: 2 KSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEE--------AKAKGTFRERLIQSL 53
Query: 123 KDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHW 164
++ +ED+ RHLS+E+M RE V E R + K+ W
Sbjct: 54 QEFKEDIHNRHLSNEDMFRE---VDEIDEIRRVRNKLIVMRW 92
Score = 38.5 bits (88), Expect = 0.003
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 3 KPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTE 43
K K EG ENE +P+ E EP E K +EEEK + E K +
Sbjct: 2 KSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAK 42
Score = 38.5 bits (88), Expect = 0.003
Identities = 19/35 (54%), Positives = 22/35 (62%)
Query: 15 EGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRK 49
EGKPE+E EP E + EEKP+ E K E E K K
Sbjct: 8 EGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAK 42
>gi|55743145 WW domain binding protein 5 [Homo sapiens]
Length = 104
Score = 49.3 bits (116), Expect = 2e-06
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Query: 63 KGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDRGTDDSP 122
K Q+ +GK E E +P+ E +P + KPE + + E+ KAK S
Sbjct: 2 KSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEE--------AKAKGTFRERLIQSL 53
Query: 123 KDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHW 164
++ +ED+ RHLS+E+M RE V E R + K+ W
Sbjct: 54 QEFKEDIHNRHLSNEDMFRE---VDEIDEIRRVRNKLIVMRW 92
Score = 38.5 bits (88), Expect = 0.003
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 3 KPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTE 43
K K EG ENE +P+ E EP E K +EEEK + E K +
Sbjct: 2 KSCQKMEGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAK 42
Score = 38.5 bits (88), Expect = 0.003
Identities = 19/35 (54%), Positives = 22/35 (62%)
Query: 15 EGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRK 49
EGKPE+E EP E + EEKP+ E K E E K K
Sbjct: 8 EGKPENESEPKHEEEPKPEEKPEEEEKLEEEAKAK 42
>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
Length = 1028
Score = 47.8 bits (112), Expect = 5e-06
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 15 EGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQLEDKGSQEKQGKSEG 74
+G P + +P G E+ +P A+G+ G+ + G GDEGQ + G ++G++
Sbjct: 355 QGPPGPKGDPGAFGLKGEKGEPGADGEA---GRPGSSGPSGDEGQPGEPGPPGEKGEAGD 411
Query: 75 EGKPQGEGKPASQAKP-EGQPRA--AEKRPAGDYVPRKAKRKTDRGTD 119
EG P +G P + P E PR + P GD P +A + D+G +
Sbjct: 412 EGNPGPDGAPGERGGPGERGPRGTPGTRGPRGD--PGEAGPQGDQGRE 457
Score = 38.5 bits (88), Expect = 0.003
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 7 KNEGNLENE-GKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQLEDKGS 65
K E + E G+P DEG+ E P +G+ EG +G PG+ G ++G
Sbjct: 373 KGEPGADGEAGRPGSSGPSGDEGQPGEPGPPGEKGEAGDEGNPGPDGAPGERGGPGERGP 432
Query: 66 QEKQGKSEGEGKPQGEGKPASQAKPEG 92
+ G G P GE P EG
Sbjct: 433 RGTPGTRGPRGDP-GEAGPQGDQGREG 458
Score = 38.5 bits (88), Expect = 0.003
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 8 NEGNLENEGKPEDEVEPDDEGKSDEEEKPD---AEGKTECEGKRKAEGEPGDEGQLEDKG 64
+ G +EG+P + P ++G++ +E P A G+ G+R G PG G D G
Sbjct: 387 SSGPSGDEGQPGEPGPPGEKGEAGDEGNPGPDGAPGERGGPGERGPRGTPGTRGPRGDPG 446
Query: 65 SQEKQGKSEGEGKPQGEGKPASQAKPEG 92
QG EG P G +A P G
Sbjct: 447 EAGPQGDQGREG-PVGVPGDPGEAGPIG 473
Score = 36.6 bits (83), Expect = 0.012
Identities = 28/100 (28%), Positives = 36/100 (36%), Gaps = 5/100 (5%)
Query: 8 NEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQLEDKGSQE 67
+EG G P ++ E DEG + P G G R G G G + G Q
Sbjct: 393 DEGQPGEPGPPGEKGEAGDEGNPGPDGAPGERGGPGERGPRGTPGTRGPRGDPGEAGPQG 452
Query: 68 KQGKSEGEGKPQGEGK-----PASQAKPEGQPRAAEKRPA 102
QG+ G P G+ P EG P + R A
Sbjct: 453 DQGREGPVGVPGDPGEAGPIGPKGYRGDEGPPGSEGARGA 492
Score = 35.0 bits (79), Expect = 0.036
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Query: 10 GNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQLEDKGSQEKQ 69
G + G DE +P + G E+ + EG +G G PG+ G G++ +
Sbjct: 383 GRPGSSGPSGDEGQPGEPGPPGEKGEAGDEGNPGPDGAPGERGGPGERGPRGTPGTRGPR 442
Query: 70 GKSEGEGKPQGEGKPASQAKPEGQPRAA 97
G GE PQG+ G P A
Sbjct: 443 G-DPGEAGPQGDQGREGPVGVPGDPGEA 469
Score = 34.7 bits (78), Expect = 0.047
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 9 EGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQLEDKGSQEK 68
+G G + P G S +E +P G +G+ EG PG +G ++G +
Sbjct: 370 KGEKGEPGADGEAGRPGSSGPSGDEGQPGEPGPPGEKGEAGDEGNPGPDGAPGERGGPGE 429
Query: 69 QGKSEGEGKPQGEGKPASQAKPEG 92
+G G G P +A P+G
Sbjct: 430 RGPRGTPGTRGPRGDP-GEAGPQG 452
Score = 33.9 bits (76), Expect = 0.080
Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 9/112 (8%)
Query: 2 EKPYNKNEGNLENEGKPEDEVEPDDEGKSD---------EEEKPDAEGKTECEGKRKAEG 52
EK +EGN +G P + P + G + + +G EG G
Sbjct: 405 EKGEAGDEGNPGPDGAPGERGGPGERGPRGTPGTRGPRGDPGEAGPQGDQGREGPVGVPG 464
Query: 53 EPGDEGQLEDKGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGD 104
+PG+ G + KG + +G EG G P E PAG+
Sbjct: 465 DPGEAGPIGPKGYRGDEGPPGSEGARGAPGPAGPPGDPGLMGERGEDGPAGN 516
Score = 33.1 bits (74), Expect = 0.14
Identities = 19/69 (27%), Positives = 27/69 (39%)
Query: 36 PDAEGKTECEGKRKAEGEPGDEGQLEDKGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPR 95
P +G +G + G GD G KG + + G G+P G + +P
Sbjct: 343 PGCKGSPGFDGIQGPPGPKGDPGAFGLKGEKGEPGADGEAGRPGSSGPSGDEGQPGEPGP 402
Query: 96 AAEKRPAGD 104
EK AGD
Sbjct: 403 PGEKGEAGD 411
Score = 31.6 bits (70), Expect = 0.40
Identities = 23/96 (23%), Positives = 36/96 (37%)
Query: 9 EGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQLEDKGSQEK 68
EG G P ++ E D G+ + +G +G R +G G +G +KG +
Sbjct: 268 EGERGKPGLPGEKGEAGDPGRPGDLGPVGYQGMKGEKGSRGEKGSRGPKGYKGEKGKRGI 327
Query: 69 QGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGD 104
G +G+ G P + P P GD
Sbjct: 328 DGVDGVKGEMGYPGLPGCKGSPGFDGIQGPPGPKGD 363
Score = 28.1 bits (61), Expect = 4.4
Identities = 18/68 (26%), Positives = 31/68 (45%)
Query: 16 GKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQLEDKGSQEKQGKSEGE 75
G P +P EG+ + P +G+ G+ G G +G +KGS+ ++G +
Sbjct: 257 GPPGLRGDPGFEGERGKPGLPGEKGEAGDPGRPGDLGPVGYQGMKGEKGSRGEKGSRGPK 316
Query: 76 GKPQGEGK 83
G +GK
Sbjct: 317 GYKGEKGK 324
Score = 27.3 bits (59), Expect = 7.5
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 43 ECE---GKRKAEGEPGDEGQLEDKGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEK 99
EC+ G G+PG EG+ G ++G++ G+P G Q + EK
Sbjct: 251 ECQPARGPPGLRGDPGFEGERGKPGLPGEKGEAGDPGRPGDLGPVGYQGMKGEKGSRGEK 310
Query: 100 RPAG--DYVPRKAKRKTD 115
G Y K KR D
Sbjct: 311 GSRGPKGYKGEKGKRGID 328
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 47.8 bits (112), Expect = 5e-06
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 18/113 (15%)
Query: 6 NKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTEC---EGKRKAEGEPGDEGQLED 62
N+++G GKPE P +G + + P GK E +G +++G P G+ E
Sbjct: 129 NQSQGPPPRPGKPEG---PPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEG 185
Query: 63 ---KGSQEKQGKSEGEGKPQG---------EGKPASQAKPEGQPRAAEKRPAG 103
+G + QG GKP+G +G P KPEG P +P G
Sbjct: 186 PPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQG 238
Score = 42.0 bits (97), Expect = 3e-04
Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 16/109 (14%)
Query: 6 NKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQLEDKGS 65
N+++G GKPE P +G + + P GK E G+P G + +G
Sbjct: 66 NQSQGPPPRPGKPEG---PPPQGGNQSQGPPPRPGKPE--------GQPPQGGN-QSQGP 113
Query: 66 QEKQGKSEG---EGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAK 111
+ GK EG +G Q +G P KPEG P + G PR K
Sbjct: 114 PPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGP-PPRPGK 161
Score = 39.3 bits (90), Expect = 0.002
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 13/108 (12%)
Query: 6 NKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTE---CEGKRKAEGEPGDEGQLED 62
N+++G GKPE P +G + + P GK E +G K +G P G+ +
Sbjct: 192 NQSQGPPPRPGKPEG---PPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQG 248
Query: 63 KGSQE--KQGKSEGEGKPQGEGKPASQAK-----PEGQPRAAEKRPAG 103
QE K + G+PQG P + P G+P+ P G
Sbjct: 249 PPPQEGNKPQRPPPPGRPQGPPPPGGNPQQPLPPPAGKPQGPPPPPQG 296
Score = 37.7 bits (86), Expect = 0.006
Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 19/111 (17%)
Query: 16 GKPEDEVEPDDEGKSDEEEKPDAEGKTEC---EGKRKAEGEPGDEGQLED---KGSQEKQ 69
GKPE +G + + P GK E +G +++G P G+ E +G + Q
Sbjct: 34 GKPEGR---RPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQ 90
Query: 70 GKSEGEGKPQGE---------GKPASQAKPEGQPRAAEKRPAGDYVPRKAK 111
G GKP+G+ G P KPEG P + G PR K
Sbjct: 91 GPPPRPGKPEGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGP-PPRPGK 140
Score = 35.0 bits (79), Expect = 0.036
Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 16/101 (15%)
Query: 26 DEGKSDEEEKPDAEGKTEC---EGKRKAEGEPGDEGQLEDK---GSQEKQGKSEGEGKPQ 79
+E S EE GK E +G + + P G+ E + G + QG GKP+
Sbjct: 20 NEDVSQEESPSVISGKPEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPE 79
Query: 80 G---------EGKPASQAKPEGQPRAAEKRPAGDYVPRKAK 111
G +G P KPEGQP + G PR K
Sbjct: 80 GPPPQGGNQSQGPPPRPGKPEGQPPQGGNQSQGP-PPRPGK 119
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 47.4 bits (111), Expect = 7e-06
Identities = 36/159 (22%), Positives = 64/159 (40%), Gaps = 13/159 (8%)
Query: 7 KNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPG--------DEG 58
KN N + E E+E + +E + D+E++ + E + E + A P DE
Sbjct: 135 KNGKNAKKEDSDEEEDDDSEEDEEDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDED 194
Query: 59 QLEDKGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDRGT 118
+D +E + E +GK A++ P AE D D
Sbjct: 195 DEDDDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAKNVAEDE---DEEEDDEDEDDDDDE 251
Query: 119 DDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQ 157
DD D ++D +E EE ++E + ++E+ K++
Sbjct: 252 DDEDDDDEDDEEEEEEEEEEPVKEA--PGKRKKEMAKQK 288
Score = 36.2 bits (82), Expect = 0.016
Identities = 25/123 (20%), Positives = 56/123 (45%), Gaps = 21/123 (17%)
Query: 13 ENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKA----------------EGEPGD 56
E+E +DE + DD+ +++ + +A T +GK+ A E + D
Sbjct: 185 EDEDDEDDEDDEDDDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAKNVAEDEDEEEDDED 244
Query: 57 EGQLEDKGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDR 116
E +D+ ++ + + E + + E +P +A + + A+++ A + AK++
Sbjct: 245 EDDDDDEDDEDDDDEDDEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPE-----AKKQKVE 299
Query: 117 GTD 119
GT+
Sbjct: 300 GTE 302
Score = 33.1 bits (74), Expect = 0.14
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 13 ENEGKPEDEVEPD-DEGKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQLEDKGSQEKQGK 71
+N + EDE E D DE D+E+ D + + + E + + E EP E + K KQ
Sbjct: 230 KNVAEDEDEEEDDEDEDDDDDEDDEDDDDEDDEEEEEEEEEEPVKEAPGKRKKEMAKQKA 289
Query: 72 SEGEGKPQGEGKPASQA 88
+ K + EG + A
Sbjct: 290 APEAKKQKVEGTEPTTA 306
Score = 31.6 bits (70), Expect = 0.40
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 2 EKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAE 51
E+ +++E + ++E +D+ E D+E + +EEE+P E GKRK E
Sbjct: 238 EEEDDEDEDDDDDEDDEDDDDEDDEEEEEEEEEEP----VKEAPGKRKKE 283
Score = 27.3 bits (59), Expect = 7.5
Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 22/154 (14%)
Query: 7 KNEGNLENEGKPEDEVEPDDEGKS-DEEEKPDAEGKTECEGKRKAEGEPGDEGQLEDKGS 65
KN+G+ + P EVE D E + E+E+ D+ G+ ++K + +
Sbjct: 9 KNQGDPKKMAPPPKEVEEDSEDEEMSEDEEDDSSGEEVVIPQKKGKKAAATSAKKVVVSP 68
Query: 66 QEKQGKSEGEGK---PQGEGKPASQAKPEGQPRAAEKRPA-----------------GDY 105
+K + K G+ A+ AK P A P G
Sbjct: 69 TKKVAVATPAKKAAVTPGKKAAATPAKKTVTPAKAVTTPGKKGATPGKALVATPGKKGAA 128
Query: 106 VPRK-AKRKTDRGTDDSPKDSQEDLQERHLSSEE 138
+P K AK + +DS ++ +D +E E+
Sbjct: 129 IPAKGAKNGKNAKKEDSDEEEDDDSEEDEEDDED 162
>gi|4759128 solute carrier family 24 (sodium/potassium/calcium
exchanger), member 1 [Homo sapiens]
Length = 1099
Score = 47.4 bits (111), Expect = 7e-06
Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 42/183 (22%)
Query: 15 EGKPEDEVE-----------PDDEGKSDEEEKP-------DAEGKTECEGKRKAEGEPGD 56
E KPE+E P + K D++E P +AE E G+ EGE
Sbjct: 709 ESKPEEEEPAKLPAVTVTPAPVPDIKGDQKENPGGQEDVAEAESTGEMPGE---EGETAG 765
Query: 57 EGQLEDKGSQEKQGKSEGEGKPQG-----------EGKPASQAKPEGQPRAAEKRPAGDY 105
EG+ E+K E Q + EGE + QG EGK ++ + EG+ A + G+
Sbjct: 766 EGETEEKSGGETQPEGEGETETQGKGEECEDENEAEGKGDNEGEDEGEIHAEDGEMKGNE 825
Query: 106 VPRKAK----------RKTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRK 155
+++ + ++G +D D +E EE E + + +EE +
Sbjct: 826 GETESQELSAENHGEAKNDEKGVEDGGGSDGGDSEEEEEEEEEQEEEEEEEEQEEEEEEE 885
Query: 156 KQK 158
+++
Sbjct: 886 EEE 888
Score = 45.4 bits (106), Expect = 3e-05
Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 10/154 (6%)
Query: 9 EGNLENEGKPED----EVEPDDEGKSDEEEK-PDAEGKTECEGKRKAEGEPGDEGQLEDK 63
EG EG+ E+ E +P+ EG+++ + K + E + E EGK EGE DEG++ +
Sbjct: 760 EGETAGEGETEEKSGGETQPEGEGETETQGKGEECEDENEAEGKGDNEGE--DEGEIHAE 817
Query: 64 GSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDRGTDDSPK 123
+ K + E E + E + + + + E D + + + + ++ +
Sbjct: 818 DGEMKGNEGETESQ---ELSAENHGEAKNDEKGVEDGGGSDGGDSEEEEEEEEEQEEEEE 874
Query: 124 DSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQ 157
+ +++ +E EE +S E R+KQ
Sbjct: 875 EEEQEEEEEEEEEEEEKGNEEPLSLDWPETRQKQ 908
Score = 41.6 bits (96), Expect = 4e-04
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 18/133 (13%)
Query: 7 KNEGNLENEGKPED-EVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQLEDKGS 65
+ EG E +GK E+ E E + EGK D E + + E E +G+ K G+EG+ E S
Sbjct: 780 EGEGETETQGKGEECEDENEAEGKGDNEGEDEGEIHAE-DGEMK-----GNEGETE---S 830
Query: 66 QEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDRGTDDSPKDS 125
QE ++ GE K +G G E+ + +++ + ++ ++
Sbjct: 831 QELSAENHGEAKNDEKGVEDGGGSDGGDSEEEEE--------EEEEQEEEEEEEEQEEEE 882
Query: 126 QEDLQERHLSSEE 138
+E+ +E +EE
Sbjct: 883 EEEEEEEEKGNEE 895
Score = 40.8 bits (94), Expect = 7e-04
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 6 NKNEGNLENEGKPEDEVEPDD-EGKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQLEDKG 64
N+ EG +NEG+ E E+ +D E K +E E E E G+ K + + ++G D G
Sbjct: 798 NEAEGKGDNEGEDEGEIHAEDGEMKGNEGETESQELSAENHGEAKNDEKGVEDGGGSDGG 857
Query: 65 SQEKQGKSEGEGKPQGEGKPASQAKPE 91
E++ + E E + + E + + + E
Sbjct: 858 DSEEEEEEEEEQEEEEEEEEQEEEEEE 884
Score = 28.9 bits (63), Expect = 2.6
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 6 NKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQL 60
N +G + G + E ++E + ++EE+ + E + E E + + E E G+E L
Sbjct: 843 NDEKGVEDGGGSDGGDSEEEEEEEEEQEEEEEEEEQEEEEEEEEEEEEKGNEEPL 897
Score = 27.7 bits (60), Expect = 5.7
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 2 EKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEP 54
EK G+ + + E+E E + E + +EEE+ + E + E E + K EP
Sbjct: 845 EKGVEDGGGSDGGDSEEEEEEEEEQEEEEEEEEQEEEEEEEE-EEEEKGNEEP 896
>gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 47.0 bits (110), Expect = 9e-06
Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 18/156 (11%)
Query: 7 KNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECE-GKRKAEGEPGDEGQLEDKGS 65
+ E EGK E E E E + E+ K + E + + E GK++ +GE E + K
Sbjct: 42 EREIETRKEGKKERESERKKERREREKRKREREKERKRERGKKEKKGERKKEERERKKRR 101
Query: 66 QEKQGKS--EGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRK-TDRGTDDSP 122
+EK+ K E E + + E K + EG+ R RK +RK +R +
Sbjct: 102 REKENKEGEEKEKRKKKEKKERGRTSKEGKERE-----------RKEERKREERKERERK 150
Query: 123 KDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQK 158
K+ +E +ER E RE V +EE ++K++
Sbjct: 151 KEEREKERER---KERKKRERKQVGEKEEERKEKER 183
Score = 45.4 bits (106), Expect = 3e-05
Identities = 35/165 (21%), Positives = 77/165 (46%), Gaps = 15/165 (9%)
Query: 7 KNEGNLENEGKPEDEVEPDDEGKSD-EEEKPDAEGKTECEGKRKAE------------GE 53
+ EG E E + + E ++ K + E+E+ GK E +G+RK E +
Sbjct: 48 RKEGKKERESERKKERREREKRKREREKERKRERGKKEKKGERKKEERERKKRRREKENK 107
Query: 54 PGDEGQLEDKGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRK 113
G+E + K ++++G++ EGK + + + + + + R E+R RK ++K
Sbjct: 108 EGEEKEKRKKKEKKERGRTSKEGKERERKEERKREERKERERKKEEREKER--ERKERKK 165
Query: 114 TDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQK 158
+R ++ +++ + + E R+ R ++E R+++K
Sbjct: 166 RERKQVGEKEEERKEKERKERKKRERNRKERKKERERKERRERKK 210
Score = 42.0 bits (97), Expect = 3e-04
Identities = 34/170 (20%), Positives = 74/170 (43%), Gaps = 12/170 (7%)
Query: 2 EKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPGDEG-QL 60
EK + G E +G+ + E + + ++E K E + + ++K G EG +
Sbjct: 74 EKERKRERGKKEKKGERKKEERERKKRRREKENKEGEEKEKRKKKEKKERGRTSKEGKER 133
Query: 61 EDKGSQEKQGKSEGEGKPQGEGKPAS--QAKPEGQPRAAEKRPAGDYVPRKAKRKTDRGT 118
E K ++++ + E E K + K + K + + EK RK ++K +R
Sbjct: 134 ERKEERKREERKERERKKEEREKERERKERKKRERKQVGEKEEERKEKERKERKKRERNR 193
Query: 119 DDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHWMQRD 168
+ K+ + +ER +E ++ +E +++QK +W +++
Sbjct: 194 KERKKERER--KERRERKKERKKK-------EERKKERQKDRQTNWREKE 234
Score = 35.0 bits (79), Expect = 0.036
Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 9/138 (6%)
Query: 13 ENEGKPEDEVEPDDEGKSDEEEKPDAEGK-TECEGKRKAEGEPGDEGQLED-------KG 64
E E K +E E + + E + EGK E + +RK E E + E+ K
Sbjct: 103 EKENKEGEEKEKRKKKEKKERGRTSKEGKERERKEERKREERKERERKKEEREKERERKE 162
Query: 65 SQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDRGTDDSPKD 124
++++ K GE + + + K + K + R E++ + R+ ++K + ++ K+
Sbjct: 163 RKKRERKQVGEKEEERKEKERKERKKRERNR-KERKKERERKERRERKKERKKKEERKKE 221
Query: 125 SQEDLQERHLSSEEMMRE 142
Q+D Q E RE
Sbjct: 222 RQKDRQTNWREKERGKRE 239
Score = 32.7 bits (73), Expect = 0.18
Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 64 GSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDRGTDDSPK 123
G Q + + E E + + EGK +++ + + R EKR R+ +RK +RG +
Sbjct: 33 GWQSEIREREREIETRKEGKKERESERKKERREREKRKR----EREKERKRERGKKEKKG 88
Query: 124 DSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQK 158
+ +++ +ER E + G+ +++ KK++
Sbjct: 89 ERKKEERERKKRRREKENKEGEEKEKRKKKEKKER 123
>gi|105990539 neurofilament, light polypeptide 68kDa [Homo sapiens]
Length = 543
Score = 46.6 bits (109), Expect = 1e-05
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 8 NEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQLEDKGSQE 67
+EG E E K ++E E ++ + +E K ++E E K + EG G+EG+ E K ++E
Sbjct: 472 SEGEAEEEEKDKEEAEEEEAAEEEEAAKEESE-----EAKEEEEGGEGEEGE-ETKEAEE 525
Query: 68 KQGKSEGEGKPQGEGK 83
++ K EG G+ Q K
Sbjct: 526 EEKKVEGAGEEQAAKK 541
Score = 31.2 bits (69), Expect = 0.52
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 32 EEEKPDAEGKTECEGKRKAEGEPGDEGQLE----DKGSQEKQGKSEGEGKPQGEGKPASQ 87
+EE+ + E E +A+ EP EG+ E DK E++ +E E + E + A +
Sbjct: 448 QEEQIEVEETIEAAKAEEAKDEPPSEGEAEEEEKDKEEAEEEEAAEEEEAAKEESEEAKE 507
Query: 88 AKPEGQPRAAEKRPAGDYVPRKAK 111
+ G+ E+ + +K +
Sbjct: 508 EEEGGEGEEGEETKEAEEEEKKVE 531
>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
Length = 2454
Score = 45.8 bits (107), Expect = 2e-05
Identities = 34/164 (20%), Positives = 72/164 (43%), Gaps = 15/164 (9%)
Query: 7 KNEGNLENEGKPEDEVEPD------------DEGKSDEEEKPDAEGKTECEGK--RKAEG 52
KN+ N E++ E+ +P +G+S EE+K + E +G+ RK
Sbjct: 1279 KNQVNSESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKEVKGRNRRKVSS 1338
Query: 53 EPGDEGQLEDKGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKR 112
E ++ ++ G E+ +SE E +P+ ++ + E Q +K+ ++
Sbjct: 1339 EDSEDSDFQESGVSEEVSESEDEQRPRTRSAKKAELE-ENQRSYKQKKKRRRIKVQEDSS 1397
Query: 113 KTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKK 156
++ + ++ +E+ +E EE + D S++ + RKK
Sbjct: 1398 SENKSNSEEEEEEKEEEEEEEEEEEEEEEDENDDSKSPGKGRKK 1441
Score = 41.6 bits (96), Expect = 4e-04
Identities = 38/168 (22%), Positives = 71/168 (42%), Gaps = 17/168 (10%)
Query: 11 NLENEGKPEDEVEPDDEGKSDEEE--KPDAEGKTECEGKRKAEGEPGDEGQLEDKGSQEK 68
N EN G E + + + E SD EE KP + ++GE G+E + + K +E
Sbjct: 1269 NEENPGDEEAKNQVNSESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKEV 1328
Query: 69 QGKS----------EGEGKPQGEGKPASQAKPEGQPRA-----AEKRPAGDYVPRKAKRK 113
+G++ + + + G + S+++ E +PR AE +K KR+
Sbjct: 1329 KGRNRRKVSSEDSEDSDFQESGVSEEVSESEDEQRPRTRSAKKAELEENQRSYKQKKKRR 1388
Query: 114 TDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGG 161
+ +DS +++ + +E EE E + +E+ K G
Sbjct: 1389 RIKVQEDSSSENKSNSEEEEEEKEEEEEEEEEEEEEEEDENDDSKSPG 1436
Score = 39.3 bits (90), Expect = 0.002
Identities = 31/152 (20%), Positives = 68/152 (44%), Gaps = 13/152 (8%)
Query: 13 ENEGKPEDEVEPDDE--GKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQLEDKGSQEKQG 70
+ +G +DE E + GK +EE D E K + + ++ E + + + + K
Sbjct: 1249 DEDGSSDDEPEEGKKRTGKQNEENPGDEEAKNQVNSESDSDSEESKKPRYRHRLLRHKLT 1308
Query: 71 KSEGEGKPQGEGKPASQAKPEGQPR---AAEKRPAGDYVPRKAKRKTDRGTDDSPKDSQE 127
S+GE + + KP + +G+ R ++E D+ + G + +S++
Sbjct: 1309 VSDGESGEEKKTKPKEHKEVKGRNRRKVSSEDSEDSDF--------QESGVSEEVSESED 1360
Query: 128 DLQERHLSSEEMMRECGDVSRAQEELRKKQKM 159
+ + R S+++ E S Q++ R++ K+
Sbjct: 1361 EQRPRTRSAKKAELEENQRSYKQKKKRRRIKV 1392
Score = 30.8 bits (68), Expect = 0.68
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 6 NKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRK 49
NK+ E E K E+E E ++E + +E+E D+ K+ +G++K
Sbjct: 1400 NKSNSEEEEEEKEEEEEEEEEEEEEEEDENDDS--KSPGKGRKK 1441
Score = 26.9 bits (58), Expect = 9.8
Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 6/113 (5%)
Query: 77 KPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDRGTDDSPKDS------QEDLQ 130
+P S + E EK+ V +K KR + D+PK + Q +
Sbjct: 628 RPTETNPVTSNSDEECNETVKEKQKLSVPVRKKDKRNSSDSAIDNPKPNKLPKSKQSETV 687
Query: 131 ERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHWMQRDVQDPFAQGDNGVSGE 183
+++ S+EM+ +VSR + H + + D Q G+
Sbjct: 688 DQNSDSDEMLAILKEVSRMSHSSSSDTDINEIHTNHKTLYDLKTQAGKDDKGK 740
>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
Length = 2492
Score = 45.8 bits (107), Expect = 2e-05
Identities = 34/164 (20%), Positives = 72/164 (43%), Gaps = 15/164 (9%)
Query: 7 KNEGNLENEGKPEDEVEPD------------DEGKSDEEEKPDAEGKTECEGK--RKAEG 52
KN+ N E++ E+ +P +G+S EE+K + E +G+ RK
Sbjct: 1317 KNQVNSESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKEVKGRNRRKVSS 1376
Query: 53 EPGDEGQLEDKGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKR 112
E ++ ++ G E+ +SE E +P+ ++ + E Q +K+ ++
Sbjct: 1377 EDSEDSDFQESGVSEEVSESEDEQRPRTRSAKKAELE-ENQRSYKQKKKRRRIKVQEDSS 1435
Query: 113 KTDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKK 156
++ + ++ +E+ +E EE + D S++ + RKK
Sbjct: 1436 SENKSNSEEEEEEKEEEEEEEEEEEEEEEDENDDSKSPGKGRKK 1479
Score = 41.6 bits (96), Expect = 4e-04
Identities = 38/168 (22%), Positives = 71/168 (42%), Gaps = 17/168 (10%)
Query: 11 NLENEGKPEDEVEPDDEGKSDEEE--KPDAEGKTECEGKRKAEGEPGDEGQLEDKGSQEK 68
N EN G E + + + E SD EE KP + ++GE G+E + + K +E
Sbjct: 1307 NEENPGDEEAKNQVNSESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKEV 1366
Query: 69 QGKS----------EGEGKPQGEGKPASQAKPEGQPRA-----AEKRPAGDYVPRKAKRK 113
+G++ + + + G + S+++ E +PR AE +K KR+
Sbjct: 1367 KGRNRRKVSSEDSEDSDFQESGVSEEVSESEDEQRPRTRSAKKAELEENQRSYKQKKKRR 1426
Query: 114 TDRGTDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKMGG 161
+ +DS +++ + +E EE E + +E+ K G
Sbjct: 1427 RIKVQEDSSSENKSNSEEEEEEKEEEEEEEEEEEEEEEDENDDSKSPG 1474
Score = 39.3 bits (90), Expect = 0.002
Identities = 31/152 (20%), Positives = 68/152 (44%), Gaps = 13/152 (8%)
Query: 13 ENEGKPEDEVEPDDE--GKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQLEDKGSQEKQG 70
+ +G +DE E + GK +EE D E K + + ++ E + + + + K
Sbjct: 1287 DEDGSSDDEPEEGKKRTGKQNEENPGDEEAKNQVNSESDSDSEESKKPRYRHRLLRHKLT 1346
Query: 71 KSEGEGKPQGEGKPASQAKPEGQPR---AAEKRPAGDYVPRKAKRKTDRGTDDSPKDSQE 127
S+GE + + KP + +G+ R ++E D+ + G + +S++
Sbjct: 1347 VSDGESGEEKKTKPKEHKEVKGRNRRKVSSEDSEDSDF--------QESGVSEEVSESED 1398
Query: 128 DLQERHLSSEEMMRECGDVSRAQEELRKKQKM 159
+ + R S+++ E S Q++ R++ K+
Sbjct: 1399 EQRPRTRSAKKAELEENQRSYKQKKKRRRIKV 1430
Score = 30.8 bits (68), Expect = 0.68
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 6 NKNEGNLENEGKPEDEVEPDDEGKSDEEEKPDAEGKTECEGKRK 49
NK+ E E K E+E E ++E + +E+E D+ K+ +G++K
Sbjct: 1438 NKSNSEEEEEEKEEEEEEEEEEEEEEEDENDDS--KSPGKGRKK 1479
Score = 26.9 bits (58), Expect = 9.8
Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 6/113 (5%)
Query: 77 KPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDRGTDDSPKDS------QEDLQ 130
+P S + E EK+ V +K KR + D+PK + Q +
Sbjct: 666 RPTETNPVTSNSDEECNETVKEKQKLSVPVRKKDKRNSSDSAIDNPKPNKLPKSKQSETV 725
Query: 131 ERHLSSEEMMRECGDVSRAQEELRKKQKMGGFHWMQRDVQDPFAQGDNGVSGE 183
+++ S+EM+ +VSR + H + + D Q G+
Sbjct: 726 DQNSDSDEMLAILKEVSRMSHSSSSDTDINEIHTNHKTLYDLKTQAGKDDKGK 778
>gi|190014588 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo
sapiens]
Length = 530
Score = 45.4 bits (106), Expect = 3e-05
Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 13/162 (8%)
Query: 2 EKPYNKNEGNLENEGKPEDEVEPDDEGKSDEEE---KPDA-EGKTECEGKRKAEGEPGDE 57
E+ +K +G + E +P+ + + D+EG+ +E++ +PD EGK E E KRK
Sbjct: 213 EEDKSKKKG--QEEKQPKKQPKKDEEGQKEEDKPRKEPDKKEGKKEVESKRK---NLAKT 267
Query: 58 GQLEDKGSQEKQGKSEGEGKPQGEGKPASQAKPEGQPRAAEKRPAGDYVPRKAKRKTDRG 117
G S+E+ EGE K +G G+ A + ++ A D RK K++
Sbjct: 268 GVTSTSDSEEEGDDQEGEKKRKG-GRNFQTAHRRNMLKGQHEKEAAD---RKRKQEEQME 323
Query: 118 TDDSPKDSQEDLQERHLSSEEMMRECGDVSRAQEELRKKQKM 159
T+ KD + + + + + + R E++ K+
Sbjct: 324 TEQQNKDEGKKPEVKKVEKKRETSMDSRLQRIHAEIKNSLKI 365
Score = 38.9 bits (89), Expect = 0.002
Identities = 33/143 (23%), Positives = 64/143 (44%), Gaps = 11/143 (7%)
Query: 24 PDDEGKSDEEEKPDAEGKTECEGKRKAEGEPGDEGQLED----KGSQEKQGKSEGEGKPQ 79
P + EE+K +G+ E + K++ + +EGQ E+ K +K+GK E E K +
Sbjct: 205 PSESDIITEEDKSKKKGQEEKQPKKQPK--KDEEGQKEEDKPRKEPDKKEGKKEVESKRK 262
Query: 80 GEGK----PASQAKPEGQPRAAE-KRPAGDYVPRKAKRKTDRGTDDSPKDSQEDLQERHL 134
K S ++ EG + E KR G +R +G + ++ QE +
Sbjct: 263 NLAKTGVTSTSDSEEEGDDQEGEKKRKGGRNFQTAHRRNMLKGQHEKEAADRKRKQEEQM 322
Query: 135 SSEEMMRECGDVSRAQEELRKKQ 157
+E+ ++ G ++ +K++
Sbjct: 323 ETEQQNKDEGKKPEVKKVEKKRE 345
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.300 0.126 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,487,090
Number of Sequences: 37866
Number of extensions: 589128
Number of successful extensions: 15166
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 732
Number of HSP's that attempted gapping in prelim test: 3705
Number of HSP's gapped (non-prelim): 7156
length of query: 183
length of database: 18,247,518
effective HSP length: 96
effective length of query: 87
effective length of database: 14,612,382
effective search space: 1271277234
effective search space used: 1271277234
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.