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Search of human proteins with 239751609
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751609 PREDICTED: hypothetical protein XP_002347928 [Homo
sapiens]
(120 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751609 PREDICTED: hypothetical protein XP_002347928 [Homo ... 249 3e-67
gi|239746124 PREDICTED: hypothetical protein XP_002344195 [Homo ... 249 3e-67
gi|239757103 PREDICTED: similar to fos39347_1 [Homo sapiens] 217 2e-57
gi|5032161 elongin C [Homo sapiens] 133 3e-32
gi|169213749 PREDICTED: similar to elongin C [Homo sapiens] 122 8e-29
gi|169214183 PREDICTED: similar to elongin C [Homo sapiens] 122 8e-29
gi|169213526 PREDICTED: similar to elongin C [Homo sapiens] 122 8e-29
gi|239752879 PREDICTED: similar to elongin C [Homo sapiens] 92 7e-20
gi|239747430 PREDICTED: similar to elongin C [Homo sapiens] 92 7e-20
gi|239741256 PREDICTED: hypothetical protein XP_002342145 [Homo ... 91 3e-19
gi|113430993 PREDICTED: similar to elongin C [Homo sapiens] 63 4e-11
gi|66912194 RAB3A interacting protein isoform A [Homo sapiens] 29 0.72
gi|41281856 RAB3A interacting protein isoform alpha 2 [Homo sapi... 29 0.72
gi|28274699 RAB3A interacting protein isoform alpha 1 [Homo sapi... 29 0.72
gi|22749259 poly (ADP-ribose) polymerase family, member 15 isofo... 29 0.94
gi|165377137 poly (ADP-ribose) polymerase family, member 15 isof... 29 0.94
gi|68299799 Purkinje cell protein 2 [Homo sapiens] 28 1.6
gi|7657540 schwannomin interacting protein 1 [Homo sapiens] 27 2.7
gi|62988361 absent in melanoma 1 [Homo sapiens] 26 7.9
>gi|239751609 PREDICTED: hypothetical protein XP_002347928 [Homo
sapiens]
Length = 120
Score = 249 bits (636), Expect = 3e-67
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60
MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV
Sbjct: 1 MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60
Query: 61 NFREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEFLTALEVLMASDFLDIYIFLFFLFF 120
NFREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEFLTALEVLMASDFLDIYIFLFFLFF
Sbjct: 61 NFREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEFLTALEVLMASDFLDIYIFLFFLFF 120
>gi|239746124 PREDICTED: hypothetical protein XP_002344195 [Homo
sapiens]
Length = 120
Score = 249 bits (636), Expect = 3e-67
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60
MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV
Sbjct: 1 MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60
Query: 61 NFREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEFLTALEVLMASDFLDIYIFLFFLFF 120
NFREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEFLTALEVLMASDFLDIYIFLFFLFF
Sbjct: 61 NFREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEFLTALEVLMASDFLDIYIFLFFLFF 120
>gi|239757103 PREDICTED: similar to fos39347_1 [Homo sapiens]
Length = 181
Score = 217 bits (552), Expect = 2e-57
Identities = 105/109 (96%), Positives = 105/109 (96%)
Query: 1 MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60
MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV
Sbjct: 1 MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60
Query: 61 NFREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEFLTALEVLMASDFL 109
NFREIPPRCYPKHAKACIYFT KVHYSNSSTEIPEFLTALEVLM FL
Sbjct: 61 NFREIPPRCYPKHAKACIYFTCKVHYSNSSTEIPEFLTALEVLMIQHFL 109
>gi|5032161 elongin C [Homo sapiens]
Length = 112
Score = 133 bits (335), Expect = 3e-32
Identities = 72/114 (63%), Positives = 85/114 (74%), Gaps = 7/114 (6%)
Query: 1 MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60
M+GEEK+ G GPDAM KL+SSD +FIVKREH SG KA+LSGPGQ AENET++V
Sbjct: 1 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV 60
Query: 61 NFREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEF----LTALEVLMASDFLD 110
NFREIP +K C+YFTYKV Y+NSSTEIPEF ALE+LMA++FLD
Sbjct: 61 NFREIPSHVL---SKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLD 111
>gi|169213749 PREDICTED: similar to elongin C [Homo sapiens]
Length = 115
Score = 122 bits (305), Expect = 8e-29
Identities = 65/114 (57%), Positives = 80/114 (70%), Gaps = 4/114 (3%)
Query: 1 MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60
M+GE+K+ G GPDA+ KL+ SD +FIVK+E SG KA+LSGPGQ AENE D+V
Sbjct: 1 MDGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEV 60
Query: 61 NFREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEFLT----ALEVLMASDFLD 110
+FREIP K C+YF YKV Y+NSSTEIPEF ALE+LMA++FLD
Sbjct: 61 HFREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFLD 114
>gi|169214183 PREDICTED: similar to elongin C [Homo sapiens]
Length = 115
Score = 122 bits (305), Expect = 8e-29
Identities = 65/114 (57%), Positives = 80/114 (70%), Gaps = 4/114 (3%)
Query: 1 MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60
M+GE+K+ G GPDA+ KL+ SD +FIVK+E SG KA+LSGPGQ AENE D+V
Sbjct: 1 MDGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEV 60
Query: 61 NFREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEFLT----ALEVLMASDFLD 110
+FREIP K C+YF YKV Y+NSSTEIPEF ALE+LMA++FLD
Sbjct: 61 HFREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFLD 114
>gi|169213526 PREDICTED: similar to elongin C [Homo sapiens]
Length = 115
Score = 122 bits (305), Expect = 8e-29
Identities = 65/114 (57%), Positives = 80/114 (70%), Gaps = 4/114 (3%)
Query: 1 MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQV 60
M+GE+K+ G GPDA+ KL+ SD +FIVK+E SG KA+LSGPGQ AENE D+V
Sbjct: 1 MDGEKKTYGGCEGPDAVYVKLILSDGHEFIVKKERALTSGTIKAMLSGPGQFAENEADEV 60
Query: 61 NFREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEFLT----ALEVLMASDFLD 110
+FREIP K C+YF YKV Y+NSSTEIPEF ALE+LMA++FLD
Sbjct: 61 HFREIPSHVLSKVYALCMYFMYKVRYANSSTEIPEFPVAPEIALELLMAANFLD 114
>gi|239752879 PREDICTED: similar to elongin C [Homo sapiens]
Length = 269
Score = 92.4 bits (228), Expect = 7e-20
Identities = 56/113 (49%), Positives = 70/113 (61%), Gaps = 7/113 (6%)
Query: 2 NGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQVN 61
+G +K+ GPDAM KL+SS IVKRE+ S KA+LSGPGQ AENE +V+
Sbjct: 159 DGRKKTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVS 218
Query: 62 FREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEF----LTALEVLMASDFLD 110
FREI +K C+Y TYK HY+NSSTEI +F A E+LM +FLD
Sbjct: 219 FREISSHVL---SKVCMYVTYKGHYTNSSTEILKFPAAPQLAPELLMTVNFLD 268
>gi|239747430 PREDICTED: similar to elongin C [Homo sapiens]
Length = 269
Score = 92.4 bits (228), Expect = 7e-20
Identities = 56/113 (49%), Positives = 70/113 (61%), Gaps = 7/113 (6%)
Query: 2 NGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQVN 61
+G +K+ GPDAM KL+SS IVKRE+ S KA+LSGPGQ AENE +V+
Sbjct: 159 DGRKKTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVS 218
Query: 62 FREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEF----LTALEVLMASDFLD 110
FREI +K C+Y TYK HY+NSSTEI +F A E+LM +FLD
Sbjct: 219 FREISSHVL---SKVCMYVTYKGHYTNSSTEILKFPAAPQIAPELLMTVNFLD 268
>gi|239741256 PREDICTED: hypothetical protein XP_002342145 [Homo
sapiens]
Length = 287
Score = 90.5 bits (223), Expect = 3e-19
Identities = 55/113 (48%), Positives = 69/113 (61%), Gaps = 7/113 (6%)
Query: 2 NGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQVN 61
+G +K+ GPDAM KL+SS IVKRE+ S KA+LSGPGQ AENE +V+
Sbjct: 177 DGRKKTYGDCEGPDAMYVKLISSSGHKVIVKREYAVTSITIKAMLSGPGQLAENEISEVS 236
Query: 62 FREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEF----LTALEVLMASDFLD 110
FREI +K C+Y TY HY+NSSTEI +F A E+LM +FLD
Sbjct: 237 FREISSHVL---SKVCMYVTYNGHYTNSSTEILKFPAAPQIAPELLMTVNFLD 286
>gi|113430993 PREDICTED: similar to elongin C [Homo sapiens]
Length = 101
Score = 63.2 bits (152), Expect = 4e-11
Identities = 41/98 (41%), Positives = 56/98 (57%), Gaps = 8/98 (8%)
Query: 1 MNGEEKSCSGYGGPDAM--DGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETD 58
M+ EEK+ S + M +G L+S + F+VK + S K +L+GP AE T
Sbjct: 1 MDEEEKTYSVCESSNTMMSNGYLLSPE---FLVKIRTAQTSATMKPLLTGPDHFAEKGTI 57
Query: 59 QVNFREIPPRCYPKHAKACIYFTYKVHYSNSSTEIPEF 96
+VN R+ P + P KAC YFTY HY+ SSTEIP+F
Sbjct: 58 EVNLRDNPSQVLP---KACKYFTYIFHYTYSSTEIPKF 92
>gi|66912194 RAB3A interacting protein isoform A [Homo sapiens]
Length = 254
Score = 29.3 bits (64), Expect = 0.72
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 31 VKREHTRASGIRKAVLSGPGQSAENET---DQVNFREIPPRCYPKHAKACIYFTY 82
VK G +K L+G +S ++ D N+ I P C + C +FTY
Sbjct: 160 VKASAVECGGPKKCALTGQSKSCKHRIKLGDSSNYYYISPFCRYRITSVCNFFTY 214
>gi|41281856 RAB3A interacting protein isoform alpha 2 [Homo
sapiens]
Length = 476
Score = 29.3 bits (64), Expect = 0.72
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 31 VKREHTRASGIRKAVLSGPGQSAENET---DQVNFREIPPRCYPKHAKACIYFTY 82
VK G +K L+G +S ++ D N+ I P C + C +FTY
Sbjct: 382 VKASAVECGGPKKCALTGQSKSCKHRIKLGDSSNYYYISPFCRYRITSVCNFFTY 436
>gi|28274699 RAB3A interacting protein isoform alpha 1 [Homo
sapiens]
Length = 460
Score = 29.3 bits (64), Expect = 0.72
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 31 VKREHTRASGIRKAVLSGPGQSAENET---DQVNFREIPPRCYPKHAKACIYFTY 82
VK G +K L+G +S ++ D N+ I P C + C +FTY
Sbjct: 366 VKASAVECGGPKKCALTGQSKSCKHRIKLGDSSNYYYISPFCRYRITSVCNFFTY 420
>gi|22749259 poly (ADP-ribose) polymerase family, member 15 isoform
2 [Homo sapiens]
Length = 444
Score = 28.9 bits (63), Expect = 0.94
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 22 VSSDDDDFIVK---REHTRASGIRKAVLSGPGQSAENE 56
++++ D IV R R SG+ +A+L G GQ+ E+E
Sbjct: 79 IATEQVDVIVNSTARTFNRKSGVSRAILEGAGQAVESE 116
>gi|165377137 poly (ADP-ribose) polymerase family, member 15 isoform
1 [Homo sapiens]
Length = 678
Score = 28.9 bits (63), Expect = 0.94
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 22 VSSDDDDFIVK---REHTRASGIRKAVLSGPGQSAENE 56
++++ D IV R R SG+ +A+L G GQ+ E+E
Sbjct: 313 IATEQVDVIVNSTARTFNRKSGVSRAILEGAGQAVESE 350
>gi|68299799 Purkinje cell protein 2 [Homo sapiens]
Length = 136
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 1 MNGEEKSCSGYGGPDAMDGKLVSSDDDDFIVKREHT---RASGIRKAVLSGPGQSAENET 57
M+ EEK+ G GP A G S D + F H R G R ++ +GPGQ+ ++++
Sbjct: 2 MDQEEKTEEG-SGPCAEAG---SPDQEGFFNLLSHVQGDRMEGQRCSLQAGPGQTTKSQS 57
Query: 58 D 58
D
Sbjct: 58 D 58
>gi|7657540 schwannomin interacting protein 1 [Homo sapiens]
Length = 487
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/61 (22%), Positives = 28/61 (45%)
Query: 6 KSCSGYGGPDAMDGKLVSSDDDDFIVKREHTRASGIRKAVLSGPGQSAENETDQVNFREI 65
K S Y D + + S DD DF+ +++ +A ++ P + E ++ N ++
Sbjct: 334 KQSSSYSDRDTTEEESESLDDMDFLTRQKKLQAEAKMALAMAKPMAKMQVEVEKQNRKKS 393
Query: 66 P 66
P
Sbjct: 394 P 394
>gi|62988361 absent in melanoma 1 [Homo sapiens]
Length = 1723
Score = 25.8 bits (55), Expect = 7.9
Identities = 11/46 (23%), Positives = 25/46 (54%)
Query: 27 DDFIVKREHTRASGIRKAVLSGPGQSAENETDQVNFREIPPRCYPK 72
D ++++E + A+ + VL +A++ V+ +++PP PK
Sbjct: 401 DHKLLEKEDSEAADSKSLVLENVTDTAQDIPTTVDTKDLPPTAMPK 446
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.138 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,887,108
Number of Sequences: 37866
Number of extensions: 191015
Number of successful extensions: 559
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 535
Number of HSP's gapped (non-prelim): 19
length of query: 120
length of database: 18,247,518
effective HSP length: 89
effective length of query: 31
effective length of database: 14,877,444
effective search space: 461200764
effective search space used: 461200764
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.