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Search of human proteins with 239751505
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751505 PREDICTED: hypothetical protein XP_002347877 [Homo
sapiens]
(139 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751505 PREDICTED: hypothetical protein XP_002347877 [Homo ... 298 1e-81
gi|239746006 PREDICTED: hypothetical protein XP_002344178 [Homo ... 298 1e-81
gi|239756990 PREDICTED: hypothetical protein XP_002345132 [Homo ... 294 2e-80
gi|145309304 cadherin EGF LAG seven-pass G-type receptor 3 [Homo... 33 0.057
gi|239756183 PREDICTED: hypothetical protein [Homo sapiens] 30 0.83
gi|239750714 PREDICTED: hypothetical protein [Homo sapiens] 30 0.83
gi|239745020 PREDICTED: hypothetical protein XP_002343333 [Homo ... 30 0.83
gi|4827004 single-minded homolog 2 long isoform [Homo sapiens] 29 1.1
gi|194239684 single-minded homolog 2 short isoform [Homo sapiens] 29 1.1
gi|103472033 fucosyltransferase 6 [Homo sapiens] 29 1.1
gi|4503815 fucosyltransferase 6 [Homo sapiens] 29 1.1
gi|150418009 transforming, acidic coiled-coil containing protein... 28 2.4
gi|45827755 transforming, acidic coiled-coil containing protein ... 28 2.4
gi|45827753 transforming, acidic coiled-coil containing protein ... 28 2.4
gi|11119414 transforming, acidic coiled-coil containing protein ... 28 2.4
gi|148277014 fucosyltransferase 3 [Homo sapiens] 28 3.1
gi|148277012 fucosyltransferase 3 [Homo sapiens] 28 3.1
gi|116284392 mucin 2 precursor [Homo sapiens] 28 3.1
gi|148277010 fucosyltransferase 3 [Homo sapiens] 28 3.1
gi|4503809 fucosyltransferase 3 [Homo sapiens] 28 3.1
gi|238624195 hypothetical protein LOC221545 isoform 3 [Homo sapi... 28 3.1
gi|158262031 hypothetical protein LOC221545 isoform 1 [Homo sapi... 28 3.1
gi|66730481 neuregulin 3 [Homo sapiens] 27 4.1
gi|169173318 PREDICTED: hypothetical protein LOC100130298 [Homo ... 27 4.1
gi|169172517 PREDICTED: hypothetical protein LOC100130298 [Homo ... 27 4.1
gi|169173087 PREDICTED: hypothetical protein LOC100130298 [Homo ... 27 4.1
gi|61742814 coiled-coil and C2 domain containing 1B [Homo sapiens] 27 4.1
gi|31712020 testis and spermatogenesis cell apoptosis related pr... 27 5.4
gi|33667044 ABI gene family, member 3 (NESH) binding protein [Ho... 27 5.4
gi|187829452 autism susceptibility candidate 2 isoform 2 [Homo s... 27 5.4
>gi|239751505 PREDICTED: hypothetical protein XP_002347877 [Homo
sapiens]
Length = 139
Score = 298 bits (762), Expect = 1e-81
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 1 MGSVTREKMEHGRDSMARGQRGSHRLPEEQWGERFPCLPLGSAEKEQWPWRLCFMLPAAF 60
MGSVTREKMEHGRDSMARGQRGSHRLPEEQWGERFPCLPLGSAEKEQWPWRLCFMLPAAF
Sbjct: 1 MGSVTREKMEHGRDSMARGQRGSHRLPEEQWGERFPCLPLGSAEKEQWPWRLCFMLPAAF 60
Query: 61 VAGTSYGHREKLLFPKHYANSTVTTRNTSPVKTPPAPPATKMQTNPRCSCVLISLQPTVL 120
VAGTSYGHREKLLFPKHYANSTVTTRNTSPVKTPPAPPATKMQTNPRCSCVLISLQPTVL
Sbjct: 61 VAGTSYGHREKLLFPKHYANSTVTTRNTSPVKTPPAPPATKMQTNPRCSCVLISLQPTVL 120
Query: 121 DWDTRFGKSVCFVSALPLL 139
DWDTRFGKSVCFVSALPLL
Sbjct: 121 DWDTRFGKSVCFVSALPLL 139
>gi|239746006 PREDICTED: hypothetical protein XP_002344178 [Homo
sapiens]
Length = 139
Score = 298 bits (762), Expect = 1e-81
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 1 MGSVTREKMEHGRDSMARGQRGSHRLPEEQWGERFPCLPLGSAEKEQWPWRLCFMLPAAF 60
MGSVTREKMEHGRDSMARGQRGSHRLPEEQWGERFPCLPLGSAEKEQWPWRLCFMLPAAF
Sbjct: 1 MGSVTREKMEHGRDSMARGQRGSHRLPEEQWGERFPCLPLGSAEKEQWPWRLCFMLPAAF 60
Query: 61 VAGTSYGHREKLLFPKHYANSTVTTRNTSPVKTPPAPPATKMQTNPRCSCVLISLQPTVL 120
VAGTSYGHREKLLFPKHYANSTVTTRNTSPVKTPPAPPATKMQTNPRCSCVLISLQPTVL
Sbjct: 61 VAGTSYGHREKLLFPKHYANSTVTTRNTSPVKTPPAPPATKMQTNPRCSCVLISLQPTVL 120
Query: 121 DWDTRFGKSVCFVSALPLL 139
DWDTRFGKSVCFVSALPLL
Sbjct: 121 DWDTRFGKSVCFVSALPLL 139
>gi|239756990 PREDICTED: hypothetical protein XP_002345132 [Homo
sapiens]
Length = 139
Score = 294 bits (752), Expect = 2e-80
Identities = 137/139 (98%), Positives = 137/139 (98%)
Query: 1 MGSVTREKMEHGRDSMARGQRGSHRLPEEQWGERFPCLPLGSAEKEQWPWRLCFMLPAAF 60
MGSVTREKMEHGRDSMARGQRGSHRLPEEQWGERFPCLPLGSAEKEQWPWRLCFMLPAAF
Sbjct: 1 MGSVTREKMEHGRDSMARGQRGSHRLPEEQWGERFPCLPLGSAEKEQWPWRLCFMLPAAF 60
Query: 61 VAGTSYGHREKLLFPKHYANSTVTTRNTSPVKTPPAPPATKMQTNPRCSCVLISLQPTVL 120
VAGTSYGHREKLLFPKHYANSTVTTRNTSPVKTPPAPPATKMQTNP CSCVLISLQPTVL
Sbjct: 61 VAGTSYGHREKLLFPKHYANSTVTTRNTSPVKTPPAPPATKMQTNPMCSCVLISLQPTVL 120
Query: 121 DWDTRFGKSVCFVSALPLL 139
DWDTRFGKSVCFVS LPLL
Sbjct: 121 DWDTRFGKSVCFVSVLPLL 139
>gi|145309304 cadherin EGF LAG seven-pass G-type receptor 3 [Homo
sapiens]
Length = 3312
Score = 33.5 bits (75), Expect = 0.057
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 12 GRDSMARGQRGSHRLPEEQWGERFPCLPLGSAEKE--QWPWRLCFMLPAAFVAGTSYGHR 69
GR AR RG P E+ G PLGS E+E Q P + + P G + +
Sbjct: 90 GRRQSARNSRGPPEQPNEELGIEHGVQPLGSRERETGQGPGSVLYWRPEVSSCGRTGPLQ 149
Query: 70 EKLLFPKHYANSTVTTRNTSPV 91
L P ++ + N+SP+
Sbjct: 150 RGSLSPGALSSGVPGSGNSSPL 171
>gi|239756183 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 29.6 bits (65), Expect = 0.83
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 41 GSAEKEQWPWRLCFMLPAAFVAGTSYGHREKLLFPKHYAN 80
G A +E W WR C P F G + HR L K A+
Sbjct: 93 GPAFREAWLWRPCPPRPRTFERGALHQHRVDLRVRKELAH 132
>gi|239750714 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 29.6 bits (65), Expect = 0.83
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 41 GSAEKEQWPWRLCFMLPAAFVAGTSYGHREKLLFPKHYAN 80
G A +E W WR C P F G + HR L K A+
Sbjct: 93 GPAFREAWLWRPCPPRPRTFERGALHQHRVDLRVRKELAH 132
>gi|239745020 PREDICTED: hypothetical protein XP_002343333 [Homo
sapiens]
Length = 229
Score = 29.6 bits (65), Expect = 0.83
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 41 GSAEKEQWPWRLCFMLPAAFVAGTSYGHREKLLFPKHYAN 80
G A +E W WR C P F G + HR L K A+
Sbjct: 93 GPAFREAWLWRPCPPRPRTFERGALHQHRVDLRVRKELAH 132
>gi|4827004 single-minded homolog 2 long isoform [Homo sapiens]
Length = 667
Score = 29.3 bits (64), Expect = 1.1
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 77 HYANSTVTTRNTSPVKTPPAPPA 99
HYAN V + ++SP K PP PPA
Sbjct: 492 HYANPLVPS-SSSPAKNPPEPPA 513
>gi|194239684 single-minded homolog 2 short isoform [Homo sapiens]
Length = 570
Score = 29.3 bits (64), Expect = 1.1
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 77 HYANSTVTTRNTSPVKTPPAPPA 99
HYAN V + ++SP K PP PPA
Sbjct: 492 HYANPLVPS-SSSPAKNPPEPPA 513
>gi|103472033 fucosyltransferase 6 [Homo sapiens]
Length = 359
Score = 29.3 bits (64), Expect = 1.1
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 39 PLGSAEKEQWPWRLC-------FMLPAAFVAGTSYGHREKLLFP--KHYANSTVTTRNTS 89
PLG A K QW WR C ++ F + + ++P + +ST T ++
Sbjct: 3 PLGPA-KPQWSWRCCLTTLLFQLLMAVCFFSYLRVSQDDPTVYPNGSRFPDSTGTPAHSI 61
Query: 90 PVKTPPAPPATKMQTNPRCS 109
P+ P K PRCS
Sbjct: 62 PLILLWTWPFNKPIALPRCS 81
>gi|4503815 fucosyltransferase 6 [Homo sapiens]
Length = 359
Score = 29.3 bits (64), Expect = 1.1
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 39 PLGSAEKEQWPWRLC-------FMLPAAFVAGTSYGHREKLLFP--KHYANSTVTTRNTS 89
PLG A K QW WR C ++ F + + ++P + +ST T ++
Sbjct: 3 PLGPA-KPQWSWRCCLTTLLFQLLMAVCFFSYLRVSQDDPTVYPNGSRFPDSTGTPAHSI 61
Query: 90 PVKTPPAPPATKMQTNPRCS 109
P+ P K PRCS
Sbjct: 62 PLILLWTWPFNKPIALPRCS 81
>gi|150418009 transforming, acidic coiled-coil containing protein 2
isoform a [Homo sapiens]
Length = 2948
Score = 28.1 bits (61), Expect = 2.4
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 84 TTRNTSPVKTPPAPPATKMQTNPRCSCVLISLQP 117
T +T+PVK PPAPP + P +S QP
Sbjct: 1955 TPESTTPVKAPPAPPPPPPEVIPEPE---VSTQP 1985
>gi|45827755 transforming, acidic coiled-coil containing protein 2
isoform b [Homo sapiens]
Length = 1094
Score = 28.1 bits (61), Expect = 2.4
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 84 TTRNTSPVKTPPAPPATKMQTNPRCSCVLISLQP 117
T +T+PVK PPAPP + P +S QP
Sbjct: 101 TPESTTPVKAPPAPPPPPPEVIPEPE---VSTQP 131
>gi|45827753 transforming, acidic coiled-coil containing protein 2
isoform c [Homo sapiens]
Length = 996
Score = 28.1 bits (61), Expect = 2.4
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 84 TTRNTSPVKTPPAPPATKMQTNPRCSCVLISLQP 117
T +T+PVK PPAPP + P +S QP
Sbjct: 33 TPESTTPVKAPPAPPPPPPEVIPEPE---VSTQP 63
>gi|11119414 transforming, acidic coiled-coil containing protein 2
isoform d [Homo sapiens]
Length = 1026
Score = 28.1 bits (61), Expect = 2.4
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 84 TTRNTSPVKTPPAPPATKMQTNPRCSCVLISLQP 117
T +T+PVK PPAPP + P +S QP
Sbjct: 33 TPESTTPVKAPPAPPPPPPEVIPEPE---VSTQP 63
>gi|148277014 fucosyltransferase 3 [Homo sapiens]
Length = 361
Score = 27.7 bits (60), Expect = 3.1
Identities = 11/15 (73%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
Query: 39 PLGSAEKEQWPWRLC 53
PLG+A K QWPWR C
Sbjct: 3 PLGAA-KPQWPWRRC 16
>gi|148277012 fucosyltransferase 3 [Homo sapiens]
Length = 361
Score = 27.7 bits (60), Expect = 3.1
Identities = 11/15 (73%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
Query: 39 PLGSAEKEQWPWRLC 53
PLG+A K QWPWR C
Sbjct: 3 PLGAA-KPQWPWRRC 16
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 27.7 bits (60), Expect = 3.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 84 TTRNTSPVKTPPAPPATKMQT 104
TT +SP+ T P+PP T M T
Sbjct: 1678 TTTPSSPITTTPSPPTTTMTT 1698
Score = 26.9 bits (58), Expect = 5.4
Identities = 18/60 (30%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 48 WPWRLCFMLPAAFVAGTSYGHREKLLFPKHYANSTVTTRNTSPVKT-PPAPPATKMQTNP 106
WP C P+ S P S TT T+P T P+PP T T P
Sbjct: 1390 WPMDKCITTPSPPTTTPSPPPTSTTTLPPTTTPSPPTTTTTTPPPTTTPSPPITTTTTPP 1449
>gi|148277010 fucosyltransferase 3 [Homo sapiens]
Length = 361
Score = 27.7 bits (60), Expect = 3.1
Identities = 11/15 (73%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
Query: 39 PLGSAEKEQWPWRLC 53
PLG+A K QWPWR C
Sbjct: 3 PLGAA-KPQWPWRRC 16
>gi|4503809 fucosyltransferase 3 [Homo sapiens]
Length = 361
Score = 27.7 bits (60), Expect = 3.1
Identities = 11/15 (73%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
Query: 39 PLGSAEKEQWPWRLC 53
PLG+A K QWPWR C
Sbjct: 3 PLGAA-KPQWPWRRC 16
>gi|238624195 hypothetical protein LOC221545 isoform 3 [Homo
sapiens]
Length = 496
Score = 27.7 bits (60), Expect = 3.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 72 LLFPKHYANSTVTTRNTSPVKTPPAPPATKMQTNPR 107
L FP + +ST TT +SP+ P PP Q P+
Sbjct: 213 LPFPPLWPHSTTTTSPSSPLFWSPLPPRLPTQRLPQ 248
>gi|158262031 hypothetical protein LOC221545 isoform 1 [Homo
sapiens]
Length = 315
Score = 27.7 bits (60), Expect = 3.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 72 LLFPKHYANSTVTTRNTSPVKTPPAPPATKMQTNPR 107
L FP + +ST TT +SP+ P PP Q P+
Sbjct: 32 LPFPPLWPHSTTTTSPSSPLFWSPLPPRLPTQRLPQ 67
>gi|66730481 neuregulin 3 [Homo sapiens]
Length = 696
Score = 27.3 bits (59), Expect = 4.1
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 74 FPKHYANSTVTTRNTSPVKTPPAPPATKMQTNPRCSCVLISL 115
FPK +T TT TSP TP A A +T R S L ++
Sbjct: 121 FPKAMETTTTTTSTTSPA-TPSAGGAASSRTPNRISTRLTTI 161
>gi|169173318 PREDICTED: hypothetical protein LOC100130298 [Homo
sapiens]
Length = 115
Score = 27.3 bits (59), Expect = 4.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 80 NSTVTTRNTSPVKTPPAPPATKMQTNPRCS 109
N+ TT TSP+ PPA TK P+ S
Sbjct: 52 NAAQTTGMTSPILLPPAIAVTKAALGPQLS 81
>gi|169172517 PREDICTED: hypothetical protein LOC100130298 [Homo
sapiens]
Length = 115
Score = 27.3 bits (59), Expect = 4.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 80 NSTVTTRNTSPVKTPPAPPATKMQTNPRCS 109
N+ TT TSP+ PPA TK P+ S
Sbjct: 52 NAAQTTGMTSPILLPPAIAVTKAALGPQLS 81
>gi|169173087 PREDICTED: hypothetical protein LOC100130298 [Homo
sapiens]
Length = 115
Score = 27.3 bits (59), Expect = 4.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 80 NSTVTTRNTSPVKTPPAPPATKMQTNPRCS 109
N+ TT TSP+ PPA TK P+ S
Sbjct: 52 NAAQTTGMTSPILLPPAIAVTKAALGPQLS 81
>gi|61742814 coiled-coil and C2 domain containing 1B [Homo sapiens]
Length = 858
Score = 27.3 bits (59), Expect = 4.1
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 87 NTSPVKTPPAPPATKMQ--TNPRCSCVLISLQP-TVLDWDTR 125
N SP PPAPPA + + P S IS QP + LD D R
Sbjct: 239 NRSPETDPPAPPALESDNPSQPETSLPGISAQPVSDLDPDPR 280
>gi|31712020 testis and spermatogenesis cell apoptosis related
protein 1 [Homo sapiens]
Length = 192
Score = 26.9 bits (58), Expect = 5.4
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 78 YANSTVTTRNTSPVKTP--PAPPATKMQTNPRCSCVLISLQPT 118
+A+S T++ SP TP P+P +T Q +P + SL+ T
Sbjct: 21 HASSNSTSQQPSPESTPQQPSPESTPQQPSPESTPQHSSLETT 63
>gi|33667044 ABI gene family, member 3 (NESH) binding protein [Homo
sapiens]
Length = 1075
Score = 26.9 bits (58), Expect = 5.4
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 73 LFPKHYANSTVTTRNTSPVKTPPAPPATKMQTNPR 107
L PK + VT +P +TP APP K PR
Sbjct: 517 LKPKIPLSPEVTHTKPAPKQTPRAPPKPKTSPRPR 551
>gi|187829452 autism susceptibility candidate 2 isoform 2 [Homo
sapiens]
Length = 1235
Score = 26.9 bits (58), Expect = 5.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 80 NSTVTTRNTSPVKTPPAPP 98
NS ++R+++P KT PAPP
Sbjct: 402 NSLSSSRSSTPAKTQPAPP 420
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.134 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,316,870
Number of Sequences: 37866
Number of extensions: 291442
Number of successful extensions: 1330
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1273
Number of HSP's gapped (non-prelim): 80
length of query: 139
length of database: 18,247,518
effective HSP length: 92
effective length of query: 47
effective length of database: 14,763,846
effective search space: 693900762
effective search space used: 693900762
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.