Guide to the Human Genome
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Name: LOC100130298 Sequence: fasta or formatted (115aa) NCBI GI: 169173318
Description:

PREDICTED: hypothetical protein LOC100130298

Not currently referenced in the text

Other entries for this name:
alt prot {115aa} PREDICTED: hypothetical protein LOC100130298
alt prot {115aa} PREDICTED: hypothetical protein LOC100130298
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         11           2
 C cysteine            1.7          2           1
 D aspartate           1.7          2           1
 E glutamate           8.7         10           1
 F phenylalanine       1.7          2           1
 G glycine             6.1          7           1
 H histidine           2.6          3           1
 I isoleucine          3.5          4           1
 K lysine              6.1          7           1
 L leucine            11.3         13           3
 M methionine          1.7          2           1
 N asparagine          3.5          4           1
 P proline             9.6         11           2
 Q glutamine           5.2          6           1
 R arginine            4.3          5           1
 S serine              7.8          9           2
 T threonine          10.4         12           2
 V valine              2.6          3           1
 W tryptophan          1.7          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC100130298 
LOC100130298          0.986   PREDICTED: hypothetical protein LOC100130298 
LOC100130298          0.986   PREDICTED: hypothetical protein LOC100130298 
IP6K3                 0.028   inositol hexakisphosphate kinase 3 
IP6K3                 0.028   inositol hexakisphosphate kinase 3 
LOC100292351          0.024   PREDICTED: hypothetical protein 
LOC100294389          0.024   PREDICTED: hypothetical protein 
PRDM10                0.024   PR domain containing 10 isoform 2 
PRDM10                0.024   PR domain containing 10 isoform 4 
PRDM10                0.024   PR domain containing 10 isoform 1 
PRDM10                0.024   PR domain containing 10 isoform 3 
ATF2                  0.014   activating transcription factor 2 
MUC5AC                0.009   mucin 5AC 
LOC100290794          0.009   PREDICTED: hypothetical protein XP_002347877 
LOC100288839          0.009   PREDICTED: hypothetical protein XP_002344178 
MUC5B                 0.009   mucin 5, subtype B, tracheobronchial 
MYST4                 0.009   MYST histone acetyltransferase (monocytic leukemia)...
ZFP106                0.009   zinc finger protein 106 homolog 
LOC100291845          0.009   PREDICTED: hypothetical protein XP_002345132 
PWWP2A                0.009   PWWP domain containing 2A isoform b 
PWWP2A                0.009   PWWP domain containing 2A isoform a 
ERAL1                 0.009   Era-like 1 
KIAA1324              0.009   hypothetical protein LOC57535 
BPTF                  0.009   bromodomain PHD finger transcription factor isoform ...
PCGF2                 0.009   ring finger protein 110 
INPP5D                0.009   SH2 containing inositol phosphatase isoform b 
INPP5D                0.009   SH2 containing inositol phosphatase isoform a 
ZFY                   0.005   zinc finger protein, Y-linked isoform 1 
SYNJ1                 0.005   synaptojanin 1 isoform a 
ZFY                   0.005   zinc finger protein, Y-linked isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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