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Search of human proteins with 239751477
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751477 PREDICTED: hypothetical protein [Homo sapiens]
(270 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751477 PREDICTED: hypothetical protein [Homo sapiens] 575 e-164
gi|239756968 PREDICTED: hypothetical protein XP_002345127 [Homo ... 570 e-163
gi|239747859 PREDICTED: hypothetical protein [Homo sapiens] 36 0.031
gi|239741741 PREDICTED: hypothetical protein XP_002342309 [Homo ... 36 0.031
gi|239744249 PREDICTED: similar to double homeobox, 4 [Homo sapi... 32 0.45
gi|239744248 PREDICTED: similar to double homeobox, 4 [Homo sapi... 32 0.45
gi|239744246 PREDICTED: hypothetical protein XP_002343082 [Homo ... 32 0.45
gi|239744244 PREDICTED: similar to double homeobox, 4 [Homo sapi... 32 0.45
gi|239744242 PREDICTED: similar to double homeobox, 4 [Homo sapi... 32 0.45
gi|239744240 PREDICTED: similar to double homeobox, 4 [Homo sapi... 32 0.45
gi|239742468 PREDICTED: double homeobox, 4-like [Homo sapiens] 32 0.45
gi|194272172 double homeobox, 4 [Homo sapiens] 32 0.45
gi|194272217 double homeobox, 4-like [Homo sapiens] 32 0.45
gi|194272216 double homeobox, 4-like [Homo sapiens] 32 0.45
gi|194272215 double homeobox, 4-like [Homo sapiens] 32 0.45
gi|194272192 double homeobox, 4-like [Homo sapiens] 32 0.45
gi|239742467 PREDICTED: double homeobox, 4-like [Homo sapiens] 32 0.76
gi|116256471 SNF1-like kinase [Homo sapiens] 31 1.3
gi|63055047 hairy and enhancer of split homolog 2 [Homo sapiens] 31 1.3
gi|51468067 Sp5 transcription factor [Homo sapiens] 31 1.3
gi|145699123 dedicator of cytokinesis 11 [Homo sapiens] 30 1.7
gi|150170699 kinesin family member 26A [Homo sapiens] 30 1.7
gi|239756926 PREDICTED: similar to TBC1 domain family, member 3 ... 30 2.2
gi|169164483 PREDICTED: hypothetical protein [Homo sapiens] 30 2.2
gi|113414226 PREDICTED: hypothetical protein [Homo sapiens] 30 2.2
gi|113413437 PREDICTED: hypothetical protein [Homo sapiens] 30 2.2
gi|4508017 zinc finger protein 207 isoform a [Homo sapiens] 30 2.2
gi|19743886 regulatory factor X4 isoform a [Homo sapiens] 30 2.9
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 30 2.9
gi|4557882 interleukin 2 receptor, gamma precursor [Homo sapiens] 30 2.9
>gi|239751477 PREDICTED: hypothetical protein [Homo sapiens]
Length = 270
Score = 575 bits (1482), Expect = e-164
Identities = 270/270 (100%), Positives = 270/270 (100%)
Query: 1 MGALITRVSWGQTGCSTGKPAFPLEIRSHVWGDAASHPSDGNPSGSAPIRGRPARRSCRV 60
MGALITRVSWGQTGCSTGKPAFPLEIRSHVWGDAASHPSDGNPSGSAPIRGRPARRSCRV
Sbjct: 1 MGALITRVSWGQTGCSTGKPAFPLEIRSHVWGDAASHPSDGNPSGSAPIRGRPARRSCRV 60
Query: 61 PWLALSRGRVPRSPDRSVHCYQPGPMISWLSQWIVVFNVTAYWPSSGPWGPLSAASCAFR 120
PWLALSRGRVPRSPDRSVHCYQPGPMISWLSQWIVVFNVTAYWPSSGPWGPLSAASCAFR
Sbjct: 61 PWLALSRGRVPRSPDRSVHCYQPGPMISWLSQWIVVFNVTAYWPSSGPWGPLSAASCAFR 120
Query: 121 TCLHARARAPVSRAGTMELAPGTVELASAVAESGLWALSGQSWDQMHMQLYPLLSIPNIT 180
TCLHARARAPVSRAGTMELAPGTVELASAVAESGLWALSGQSWDQMHMQLYPLLSIPNIT
Sbjct: 121 TCLHARARAPVSRAGTMELAPGTVELASAVAESGLWALSGQSWDQMHMQLYPLLSIPNIT 180
Query: 181 DTLILYLRVQPQHGPFSVWAPFPAASSKDLGPPSSPGAQPCCLAEDRAQVGLAWVESPAT 240
DTLILYLRVQPQHGPFSVWAPFPAASSKDLGPPSSPGAQPCCLAEDRAQVGLAWVESPAT
Sbjct: 181 DTLILYLRVQPQHGPFSVWAPFPAASSKDLGPPSSPGAQPCCLAEDRAQVGLAWVESPAT 240
Query: 241 GCSDPGGAWSPTVASMHVDTEPGVYAPPVP 270
GCSDPGGAWSPTVASMHVDTEPGVYAPPVP
Sbjct: 241 GCSDPGGAWSPTVASMHVDTEPGVYAPPVP 270
>gi|239756968 PREDICTED: hypothetical protein XP_002345127 [Homo
sapiens]
Length = 270
Score = 570 bits (1468), Expect = e-163
Identities = 268/270 (99%), Positives = 268/270 (99%)
Query: 1 MGALITRVSWGQTGCSTGKPAFPLEIRSHVWGDAASHPSDGNPSGSAPIRGRPARRSCRV 60
MGALITRVSWGQTGCSTGKPAFPLEIRSHVWGDAASHPSDGNPSGSAPIRGRPARRSCRV
Sbjct: 1 MGALITRVSWGQTGCSTGKPAFPLEIRSHVWGDAASHPSDGNPSGSAPIRGRPARRSCRV 60
Query: 61 PWLALSRGRVPRSPDRSVHCYQPGPMISWLSQWIVVFNVTAYWPSSGPWGPLSAASCAFR 120
PWLALSRGRVPRSPDRSVHCYQPGPMISWLSQWIVVFNVTAYWPSSGPWGPLSAASCAFR
Sbjct: 61 PWLALSRGRVPRSPDRSVHCYQPGPMISWLSQWIVVFNVTAYWPSSGPWGPLSAASCAFR 120
Query: 121 TCLHARARAPVSRAGTMELAPGTVELASAVAESGLWALSGQSWDQMHMQLYPLLSIPNIT 180
TCLHARA APVSRAGTME APGTVELASAVAESGLWALSGQSWDQMHMQLYPLLSIPNIT
Sbjct: 121 TCLHARAPAPVSRAGTMEPAPGTVELASAVAESGLWALSGQSWDQMHMQLYPLLSIPNIT 180
Query: 181 DTLILYLRVQPQHGPFSVWAPFPAASSKDLGPPSSPGAQPCCLAEDRAQVGLAWVESPAT 240
DTLILYLRVQPQHGPFSVWAPFPAASSKDLGPPSSPGAQPCCLAEDRAQVGLAWVESPAT
Sbjct: 181 DTLILYLRVQPQHGPFSVWAPFPAASSKDLGPPSSPGAQPCCLAEDRAQVGLAWVESPAT 240
Query: 241 GCSDPGGAWSPTVASMHVDTEPGVYAPPVP 270
GCSDPGGAWSPTVASMHVDTEPGVYAPPVP
Sbjct: 241 GCSDPGGAWSPTVASMHVDTEPGVYAPPVP 270
>gi|239747859 PREDICTED: hypothetical protein [Homo sapiens]
Length = 595
Score = 36.2 bits (82), Expect = 0.031
Identities = 44/159 (27%), Positives = 61/159 (38%), Gaps = 30/159 (18%)
Query: 14 GCSTGKPAFPLEIRSHVWGDAASHPSDGNPSGSAPIRGRPARRSCRVPWLALS------- 66
G S G PA+ LE S + G+P S P+R P++ R+P L
Sbjct: 388 GNSAGLPAWHLE----------SQEAKGDPEPSFPVR--PSQGCSRMPRFKLQLPCQLGF 435
Query: 67 ----RGRVPRSPDRSVHCYQPGPMISWLSQWIVV--FNVTAYWPSSG-PWGPLSAASCAF 119
G+V + R + + +WL V + + P+ G PW A A
Sbjct: 436 SAGWTGQVSQGTSRRLQAMRLDN--AWLVGQTDVDGASTSERLPNLGHPWPQPQAIQGAA 493
Query: 120 RTCL--HARARAPVSRAGTMELAPGTVELASAVAESGLW 156
TC H+R RAPV A AP V A+A W
Sbjct: 494 CTCSTSHSRGRAPVCNARRRRAAPAVVAAAAAATGGDAW 532
>gi|239741741 PREDICTED: hypothetical protein XP_002342309 [Homo
sapiens]
Length = 404
Score = 36.2 bits (82), Expect = 0.031
Identities = 44/159 (27%), Positives = 61/159 (38%), Gaps = 30/159 (18%)
Query: 14 GCSTGKPAFPLEIRSHVWGDAASHPSDGNPSGSAPIRGRPARRSCRVPWLALS------- 66
G S G PA+ LE S + G+P S P+R P++ R+P L
Sbjct: 197 GNSAGLPAWHLE----------SQEAKGDPEPSFPVR--PSQGCSRMPRFKLQLPCQLGF 244
Query: 67 ----RGRVPRSPDRSVHCYQPGPMISWLSQWIVV--FNVTAYWPSSG-PWGPLSAASCAF 119
G+V + R + + +WL V + + P+ G PW A A
Sbjct: 245 SAGWTGQVSQGTSRRLQAMRLDN--AWLVGQTDVDGASTSERLPNLGHPWPQPQAIQGAA 302
Query: 120 RTCL--HARARAPVSRAGTMELAPGTVELASAVAESGLW 156
TC H+R RAPV A AP V A+A W
Sbjct: 303 CTCSTSHSRGRAPVCNARRRRAAPAVVAAAAAATGGDAW 341
>gi|239744249 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 32.3 bits (72), Expect = 0.45
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 199 WAPFPAASSKDLGPPSSPGAQPCCLAE-DRAQVGL--AWVESPATGCSDPGGAW--SPTV 253
W P P S +D P PC +A+ AQ G V +P T P W P V
Sbjct: 320 WPPHPGKSREDRDPQRDGLPGPCAVAQPGPAQAGPQGQGVLAPPTSQGSPWWGWGRGPQV 379
Query: 254 ASMHVDTEPGVYAPPVP 270
A + + G PP P
Sbjct: 380 AGAAWEPQAGAAPPPQP 396
>gi|239744248 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 32.3 bits (72), Expect = 0.45
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 199 WAPFPAASSKDLGPPSSPGAQPCCLAE-DRAQVGL--AWVESPATGCSDPGGAW--SPTV 253
W P P S +D P PC +A+ AQ G V +P T P W P V
Sbjct: 320 WPPHPGKSREDRDPQRDGLPGPCAVAQPGPAQAGPQGQGVLAPPTSQGSPWWGWGRGPQV 379
Query: 254 ASMHVDTEPGVYAPPVP 270
A + + G PP P
Sbjct: 380 AGAAWEPQAGAAPPPQP 396
>gi|239744246 PREDICTED: hypothetical protein XP_002343082 [Homo
sapiens]
Length = 483
Score = 32.3 bits (72), Expect = 0.45
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 199 WAPFPAASSKDLGPPSSPGAQPCCLAE-DRAQVGL--AWVESPATGCSDPGGAW--SPTV 253
W P P S +D P PC +A+ AQ G V +P T P W P V
Sbjct: 320 WPPHPGKSREDRDPQRDGLPGPCAVAQPGPAQAGPQGQGVLAPPTSQGSPWWGWGRGPQV 379
Query: 254 ASMHVDTEPGVYAPPVP 270
A + + G PP P
Sbjct: 380 AGAAWEPQAGAAPPPQP 396
>gi|239744244 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 32.3 bits (72), Expect = 0.45
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 199 WAPFPAASSKDLGPPSSPGAQPCCLAE-DRAQVGL--AWVESPATGCSDPGGAW--SPTV 253
W P P S +D P PC +A+ AQ G V +P T P W P V
Sbjct: 320 WPPHPGKSREDRDPQRDGLPGPCAVAQPGPAQAGPQGQGVLAPPTSQGSPWWGWGRGPQV 379
Query: 254 ASMHVDTEPGVYAPPVP 270
A + + G PP P
Sbjct: 380 AGAAWEPQAGAAPPPQP 396
>gi|239744242 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 32.3 bits (72), Expect = 0.45
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 199 WAPFPAASSKDLGPPSSPGAQPCCLAE-DRAQVGL--AWVESPATGCSDPGGAW--SPTV 253
W P P S +D P PC +A+ AQ G V +P T P W P V
Sbjct: 320 WPPHPGKSREDRDPQRDGLPGPCAVAQPGPAQAGPQGQGVLAPPTSQGSPWWGWGRGPQV 379
Query: 254 ASMHVDTEPGVYAPPVP 270
A + + G PP P
Sbjct: 380 AGAAWEPQAGAAPPPQP 396
>gi|239744240 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 32.3 bits (72), Expect = 0.45
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 199 WAPFPAASSKDLGPPSSPGAQPCCLAE-DRAQVGL--AWVESPATGCSDPGGAW--SPTV 253
W P P S +D P PC +A+ AQ G V +P T P W P V
Sbjct: 320 WPPHPGKSREDRDPQRDGLPGPCAVAQPGPAQAGPQGQGVLAPPTSQGSPWWGWGRGPQV 379
Query: 254 ASMHVDTEPGVYAPPVP 270
A + + G PP P
Sbjct: 380 AGAAWEPQAGAAPPPQP 396
>gi|239742468 PREDICTED: double homeobox, 4-like [Homo sapiens]
Length = 485
Score = 32.3 bits (72), Expect = 0.45
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 199 WAPFPAASSKDLGPPSSPGAQPCCLAE-DRAQVGL--AWVESPATGCSDPGGAW--SPTV 253
W P P S +D P PC +A+ AQ G V +P T P W P V
Sbjct: 320 WPPHPGKSREDRDPQRDGLPGPCAVAQPGPAQAGPQGQGVLAPPTSQGSPWWGWGRGPQV 379
Query: 254 ASMHVDTEPGVYAPPVP 270
A + + G PP P
Sbjct: 380 AGAAWEPQAGAAPPPQP 396
>gi|194272172 double homeobox, 4 [Homo sapiens]
Length = 485
Score = 32.3 bits (72), Expect = 0.45
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 199 WAPFPAASSKDLGPPSSPGAQPCCLAE-DRAQVGL--AWVESPATGCSDPGGAW--SPTV 253
W P P S +D P PC +A+ AQ G V +P T P W P V
Sbjct: 320 WPPHPGKSREDRDPQRDGLPGPCAVAQPGPAQAGPQGQGVLAPPTSQGSPWWGWGRGPQV 379
Query: 254 ASMHVDTEPGVYAPPVP 270
A + + G PP P
Sbjct: 380 AGAAWEPQAGAAPPPQP 396
>gi|194272217 double homeobox, 4-like [Homo sapiens]
Length = 485
Score = 32.3 bits (72), Expect = 0.45
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 199 WAPFPAASSKDLGPPSSPGAQPCCLAE-DRAQVGL--AWVESPATGCSDPGGAW--SPTV 253
W P P S +D P PC +A+ AQ G V +P T P W P V
Sbjct: 320 WPPHPGKSREDRDPQRDGLPGPCAVAQPGPAQAGPQGQGVLAPPTSQGSPWWGWGRGPQV 379
Query: 254 ASMHVDTEPGVYAPPVP 270
A + + G PP P
Sbjct: 380 AGAAWEPQAGAAPPPQP 396
>gi|194272216 double homeobox, 4-like [Homo sapiens]
Length = 485
Score = 32.3 bits (72), Expect = 0.45
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 199 WAPFPAASSKDLGPPSSPGAQPCCLAE-DRAQVGL--AWVESPATGCSDPGGAW--SPTV 253
W P P S +D P PC +A+ AQ G V +P T P W P V
Sbjct: 320 WPPHPGKSREDRDPQRDGLPGPCAVAQPGPAQAGPQGQGVLAPPTSQGSPWWGWGRGPQV 379
Query: 254 ASMHVDTEPGVYAPPVP 270
A + + G PP P
Sbjct: 380 AGAAWEPQAGAAPPPQP 396
>gi|194272215 double homeobox, 4-like [Homo sapiens]
Length = 485
Score = 32.3 bits (72), Expect = 0.45
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 199 WAPFPAASSKDLGPPSSPGAQPCCLAE-DRAQVGL--AWVESPATGCSDPGGAW--SPTV 253
W P P S +D P PC +A+ AQ G V +P T P W P V
Sbjct: 320 WPPHPGKSREDRDPQRDGLPGPCAVAQPGPAQAGPQGQGVLAPPTSQGSPWWGWGRGPQV 379
Query: 254 ASMHVDTEPGVYAPPVP 270
A + + G PP P
Sbjct: 380 AGAAWEPQAGAAPPPQP 396
>gi|194272192 double homeobox, 4-like [Homo sapiens]
Length = 485
Score = 32.3 bits (72), Expect = 0.45
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 199 WAPFPAASSKDLGPPSSPGAQPCCLAE-DRAQVGL--AWVESPATGCSDPGGAW--SPTV 253
W P P S +D P PC +A+ AQ G V +P T P W P V
Sbjct: 320 WPPHPGKSREDRDPQRDGLPGPCAVAQPGPAQAGPQGQGVLAPPTSQGSPWWGWGRGPQV 379
Query: 254 ASMHVDTEPGVYAPPVP 270
A + + G PP P
Sbjct: 380 AGAAWEPQAGAAPPPQP 396
>gi|239742467 PREDICTED: double homeobox, 4-like [Homo sapiens]
Length = 483
Score = 31.6 bits (70), Expect = 0.76
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 199 WAPFPAASSKDLGPPSSPGAQPCCLAE-DRAQVGL--AWVESPATGCSDPGGAW--SPTV 253
W P P S +D P PC +A+ AQ G V +P T P W P V
Sbjct: 320 WPPHPGKSREDRDPQRDGLPGPCAVAQPGPAQAGPQGQGVLAPPTSQGSPWWGWGRGPQV 379
Query: 254 ASMHVDTEPGVYAPPVP 270
A + + G PP P
Sbjct: 380 AGAAWEPQAGEAPPPQP 396
>gi|116256471 SNF1-like kinase [Homo sapiens]
Length = 783
Score = 30.8 bits (68), Expect = 1.3
Identities = 40/145 (27%), Positives = 51/145 (35%), Gaps = 15/145 (10%)
Query: 128 RAPVSRAGTMELAPGTVELASAVAESGLWALSGQSWDQMHMQLYPLLSIPNITDTLILYL 187
+AP SRA L+P S G A S + W + L +L L
Sbjct: 614 QAPASRASRGGLSPFHAPAQSPGLHGGA-AGSREGWSLLEEVL---------EQQRLLQL 663
Query: 188 RVQPQHGPFSVWAPFPAASSKDLGPPSSPGAQPCCLAEDRAQVGLAWVESP--ATGCSDP 245
+ P P AP PA + + P PGA P L GL + P TG S
Sbjct: 664 QHHPAAAPGCSQAPQPAPAPFVIAPCDGPGAAP--LPSTLLTSGLPLLPPPLLQTGASPV 721
Query: 246 GGAWSPTVASMHVDTEPGVYAPPVP 270
A +H+ T P P VP
Sbjct: 722 ASAAQLLDTHLHIGTGP-TALPAVP 745
>gi|63055047 hairy and enhancer of split homolog 2 [Homo sapiens]
Length = 173
Score = 30.8 bits (68), Expect = 1.3
Identities = 21/81 (25%), Positives = 32/81 (39%)
Query: 3 ALITRVSWGQTGCSTGKPAFPLEIRSHVWGDAASHPSDGNPSGSAPIRGRPARRSCRVPW 62
A + R++ C +PA + H+W AAS DG +G + PA P
Sbjct: 92 ACVARLARVLPACRVLEPAVSARLLEHLWRRAASATLDGGRAGDSSGPSAPAPAPASAPE 151
Query: 63 LALSRGRVPRSPDRSVHCYQP 83
A + P SP ++P
Sbjct: 152 PASAPVPSPPSPPCGPGLWRP 172
>gi|51468067 Sp5 transcription factor [Homo sapiens]
Length = 398
Score = 30.8 bits (68), Expect = 1.3
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 191 PQHGPFSVWAPFPAASSKDLGPPSSPGAQPCC--LAEDRAQVGLAWVESPATGCSDPGGA 248
P + P++ A P S L PP P P C L+ + A L W P G + PG +
Sbjct: 144 PAYVPYAAQAALPPGYSNLLPPPPPPPPPPTCRQLSPNPAPDDLPWWSIPQAG-AGPGAS 202
Query: 249 WSP 251
P
Sbjct: 203 GVP 205
>gi|145699123 dedicator of cytokinesis 11 [Homo sapiens]
Length = 2073
Score = 30.4 bits (67), Expect = 1.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 23 PLEIRSHVWGDAASHPSDGNPSGSAP 48
P +R +WG + SDG+P GS+P
Sbjct: 421 PPSVREMLWGSSTQLASDGSPKGSSP 446
>gi|150170699 kinesin family member 26A [Homo sapiens]
Length = 1882
Score = 30.4 bits (67), Expect = 1.7
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 193 HGPFSVWAPFPAASSKDLGPPSSP-GAQPCCLAEDRAQVGLAWVESPATGCS 243
HG S+ P SS+D P+ P G QP DR + GLAW P+ S
Sbjct: 156 HGGPSLAPPSTTTSSRDTPGPAGPAGRQPGRAGPDRTK-GLAWSPGPSVQVS 206
>gi|239756926 PREDICTED: similar to TBC1 domain family, member 3
[Homo sapiens]
Length = 424
Score = 30.0 bits (66), Expect = 2.2
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 191 PQHGPFSVWAPFPAASSKDLGPPSSPGAQPCCLAEDRAQVGLAWVESPATGCSDPGGAW 249
P P+ +W+ P + + P PG + ED VG V SPA P G+W
Sbjct: 269 PARFPWPIWSASPPRAPRSSTP--CPGG---AVREDTYPVGTQGVPSPALAQGGPQGSW 322
>gi|169164483 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 30.0 bits (66), Expect = 2.2
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 197 SVWAPF-----PAASSKDLGPPSSPGAQPCCLAEDRAQVGLAWV-ESPATGCSDPGGAWS 250
S W P PA + + L PP+S P L + GLAW ESPA+ S+ W+
Sbjct: 224 SGWTPARPPSPPAGAPEALRPPASTTRAPAPLTLSFSARGLAWAGESPASHQSERRWQWT 283
>gi|113414226 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 30.0 bits (66), Expect = 2.2
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 197 SVWAPF-----PAASSKDLGPPSSPGAQPCCLAEDRAQVGLAWV-ESPATGCSDPGGAWS 250
S W P PA + + L PP+S P L + GLAW ESPA+ S+ W+
Sbjct: 224 SGWTPARPPSPPAGAPEALRPPASTTRAPAPLTLSFSARGLAWAGESPASHQSERRWQWT 283
>gi|113413437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 30.0 bits (66), Expect = 2.2
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 197 SVWAPF-----PAASSKDLGPPSSPGAQPCCLAEDRAQVGLAWV-ESPATGCSDPGGAWS 250
S W P PA + + L PP+S P L + GLAW ESPA+ S+ W+
Sbjct: 224 SGWTPARPPSPPAGAPEALRPPASTTRAPAPLTLSFSARGLAWAGESPASHQSERRWQWT 283
>gi|4508017 zinc finger protein 207 isoform a [Homo sapiens]
Length = 478
Score = 30.0 bits (66), Expect = 2.2
Identities = 26/88 (29%), Positives = 29/88 (32%), Gaps = 6/88 (6%)
Query: 189 VQPQHGPFSVWA-----PFPAASSKDLG-PPSSPGAQPCCLAEDRAQVGLAWVESPATGC 242
VQPQ G A P P A G PP PG P G+ P G
Sbjct: 132 VQPQQGYIPPMAQPGLPPVPGAPGMPPGIPPLMPGVPPLMPGMPPVMPGMPPGMMPMGGM 191
Query: 243 SDPGGAWSPTVASMHVDTEPGVYAPPVP 270
PG P + M P V P +P
Sbjct: 192 MPPGPGIPPLMPGMPPGMPPPVPRPGIP 219
>gi|19743886 regulatory factor X4 isoform a [Homo sapiens]
Length = 641
Score = 29.6 bits (65), Expect = 2.9
Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 8/103 (7%)
Query: 175 SIPNITDTLILYLRVQPQHGPFSVWAPFPAASSKDLGPPSSPGAQPCCLAEDRAQVG--- 231
S + + +IL P P ++P +A+S ++ PPSSP + P + G
Sbjct: 395 STAEVREEIILTEAAAPTPSPVPSFSPAKSATSVEVPPPSSPVSNPSPEYTGLSTTGAMQ 454
Query: 232 -----LAWVESPATGCSDPGGAWSPTVASMHVDTEPGVYAPPV 269
L + + A G P + + HV + + PV
Sbjct: 455 SYTWSLTYTVTTAAGSPAENSQQLPCMRNTHVPSSSVTHRIPV 497
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 29.6 bits (65), Expect = 2.9
Identities = 23/77 (29%), Positives = 25/77 (32%), Gaps = 15/77 (19%)
Query: 201 PFPAASSKDLGPPSSPGAQPCCLAEDRAQVGLAWVESPATGCSDPGGAWS-------PTV 253
P PA GPP PGA R Q G+ P +PG A V
Sbjct: 556 PGPAGQDGRPGPPGPPGA--------RGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAV 607
Query: 254 ASMHVDTEPGVYAPPVP 270
D E G PP P
Sbjct: 608 GPAGKDGEAGAQGPPGP 624
>gi|4557882 interleukin 2 receptor, gamma precursor [Homo sapiens]
Length = 369
Score = 29.6 bits (65), Expect = 2.9
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 12/99 (12%)
Query: 163 WDQMHMQLYPLLSIPNITDTLILYLRVQPQHGPFSVWAPFPAASSKDLGPPSSPGAQPCC 222
W + M P L N+ D + Y HG FS W+ ++ L P S + C
Sbjct: 282 WLERTMPRIPTLK--NLEDLVTEY------HGNFSAWSGVSKGLAESLQPDYS---ERLC 330
Query: 223 LAEDRAQVGLAWVESP-ATGCSDPGGAWSPTVASMHVDT 260
L + G A E P A+ C+ W+P ++ +T
Sbjct: 331 LVSEIPPKGGALGEGPGASPCNQHSPYWAPPCYTLKPET 369
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,687,488
Number of Sequences: 37866
Number of extensions: 752420
Number of successful extensions: 2534
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 2509
Number of HSP's gapped (non-prelim): 80
length of query: 270
length of database: 18,247,518
effective HSP length: 101
effective length of query: 169
effective length of database: 14,423,052
effective search space: 2437495788
effective search space used: 2437495788
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.