BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239751438 PREDICTED: similar to hCG1647636 [Homo sapiens] (73 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239756947 PREDICTED: similar to hCG1647636 [Homo sapiens] 165 6e-42 gi|239751438 PREDICTED: similar to hCG1647636 [Homo sapiens] 165 6e-42 gi|239745943 PREDICTED: similar to hCG1647636 [Homo sapiens] 165 6e-42 gi|7706499 DNA directed RNA polymerase III polypeptide K [Homo s... 107 2e-24 gi|9994187 platelet-derived growth factor C precursor [Homo sapi... 29 0.69 gi|17978466 cyclin T1 [Homo sapiens] 28 1.5 gi|17978469 cyclin T2 isoform b [Homo sapiens] 27 2.6 gi|4502629 cyclin T2 isoform a [Homo sapiens] 27 2.6 gi|42475941 zinc finger protein 261 [Homo sapiens] 27 3.4 gi|4827067 zinc finger protein 261 [Homo sapiens] 27 3.4 gi|169171432 PREDICTED: similar to hCG2014367 [Homo sapiens] 27 4.5 gi|239753062 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5 gi|169171899 PREDICTED: similar to hCG2014367 [Homo sapiens] 27 4.5 gi|169171130 PREDICTED: hypothetical protein LOC100130600 [Homo ... 27 4.5 gi|239740980 PREDICTED: hypothetical protein XP_002344293 [Homo ... 27 4.5 gi|239509024 PREDICTED: similar to hCG2014367 [Homo sapiens] 27 4.5 gi|169171742 PREDICTED: hypothetical protein LOC442676 [Homo sap... 26 5.9 gi|169172340 PREDICTED: hypothetical protein LOC442676 [Homo sap... 26 5.9 gi|169170016 PREDICTED: hypothetical protein LOC442676 [Homo sap... 26 5.9 gi|239508816 PREDICTED: hypothetical protein LOC442676 [Homo sap... 26 5.9 gi|108773804 Fraser syndrome 1 [Homo sapiens] 26 5.9 gi|169790973 parkin isoform 3 [Homo sapiens] 26 7.7 gi|169790971 parkin isoform 2 [Homo sapiens] 26 7.7 gi|169790969 parkin isoform 1 [Homo sapiens] 26 7.7 gi|126012573 low density lipoprotein-related protein 2 [Homo sap... 26 7.7 >gi|239756947 PREDICTED: similar to hCG1647636 [Homo sapiens] Length = 73 Score = 165 bits (418), Expect = 6e-42 Identities = 73/73 (100%), Positives = 73/73 (100%) Query: 1 MMLLFYPGCRDGLIVEEGQRCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLGGAAA 60 MMLLFYPGCRDGLIVEEGQRCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLGGAAA Sbjct: 1 MMLLFYPGCRDGLIVEEGQRCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLGGAAA 60 Query: 61 WEDVDSTAEPCPQ 73 WEDVDSTAEPCPQ Sbjct: 61 WEDVDSTAEPCPQ 73 >gi|239751438 PREDICTED: similar to hCG1647636 [Homo sapiens] Length = 73 Score = 165 bits (418), Expect = 6e-42 Identities = 73/73 (100%), Positives = 73/73 (100%) Query: 1 MMLLFYPGCRDGLIVEEGQRCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLGGAAA 60 MMLLFYPGCRDGLIVEEGQRCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLGGAAA Sbjct: 1 MMLLFYPGCRDGLIVEEGQRCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLGGAAA 60 Query: 61 WEDVDSTAEPCPQ 73 WEDVDSTAEPCPQ Sbjct: 61 WEDVDSTAEPCPQ 73 >gi|239745943 PREDICTED: similar to hCG1647636 [Homo sapiens] Length = 73 Score = 165 bits (418), Expect = 6e-42 Identities = 73/73 (100%), Positives = 73/73 (100%) Query: 1 MMLLFYPGCRDGLIVEEGQRCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLGGAAA 60 MMLLFYPGCRDGLIVEEGQRCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLGGAAA Sbjct: 1 MMLLFYPGCRDGLIVEEGQRCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLGGAAA 60 Query: 61 WEDVDSTAEPCPQ 73 WEDVDSTAEPCPQ Sbjct: 61 WEDVDSTAEPCPQ 73 >gi|7706499 DNA directed RNA polymerase III polypeptide K [Homo sapiens] Length = 108 Score = 107 bits (267), Expect = 2e-24 Identities = 55/73 (75%), Positives = 58/73 (79%), Gaps = 3/73 (4%) Query: 2 MLLFYPGCRDGLIVEEGQRCRCHSLACNTCLCVH-FTHKVTNWKYSKLKEVDDGLGGAAA 60 MLLF PGC +GLIVEEGQRC H ACNTC VH T KVTN KY KLKEVDD LGGAAA Sbjct: 1 MLLFCPGCGNGLIVEEGQRC--HRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAA 58 Query: 61 WEDVDSTAEPCPQ 73 WE+VDSTAE CP+ Sbjct: 59 WENVDSTAESCPK 71 >gi|9994187 platelet-derived growth factor C precursor [Homo sapiens] Length = 345 Score = 29.3 bits (64), Expect = 0.69 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%) Query: 4 LFYPGCRDGLIVEEGQRCRCHSLACNTCLCVHFTHKVTNWKYSKLKEV 51 +F+PGC L+ G C C CN C CV KVT KY ++ ++ Sbjct: 269 IFWPGCL--LVKRCGGNCACCLHNCNECQCV--PSKVTK-KYHEVLQL 311 >gi|17978466 cyclin T1 [Homo sapiens] Length = 726 Score = 28.1 bits (61), Expect = 1.5 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 6/37 (16%) Query: 31 CLCVHFTHKVTNWKYSKLKEVDDGLGGAAAWEDVDST 67 C+C+H K +NW E+ G WE VD+T Sbjct: 198 CVCIHLACKWSNW------EIPVSTDGKHWWEYVDAT 228 >gi|17978469 cyclin T2 isoform b [Homo sapiens] Length = 730 Score = 27.3 bits (59), Expect = 2.6 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 6/37 (16%) Query: 31 CLCVHFTHKVTNWKYSKLKEVDDGLGGAAAWEDVDST 67 C+C+H K +NW E+ G WE VD T Sbjct: 197 CVCIHLACKWSNW------EIPVSTDGKHWWEYVDPT 227 >gi|4502629 cyclin T2 isoform a [Homo sapiens] Length = 663 Score = 27.3 bits (59), Expect = 2.6 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 6/37 (16%) Query: 31 CLCVHFTHKVTNWKYSKLKEVDDGLGGAAAWEDVDST 67 C+C+H K +NW E+ G WE VD T Sbjct: 197 CVCIHLACKWSNW------EIPVSTDGKHWWEYVDPT 227 >gi|42475941 zinc finger protein 261 [Homo sapiens] Length = 1370 Score = 26.9 bits (58), Expect = 3.4 Identities = 12/23 (52%), Positives = 13/23 (56%) Query: 50 EVDDGLGGAAAWEDVDSTAEPCP 72 EVD G G AW+ D T EP P Sbjct: 94 EVDHGPEGTLAWDAGDQTLEPGP 116 >gi|4827067 zinc finger protein 261 [Homo sapiens] Length = 1370 Score = 26.9 bits (58), Expect = 3.4 Identities = 12/23 (52%), Positives = 13/23 (56%) Query: 50 EVDDGLGGAAAWEDVDSTAEPCP 72 EVD G G AW+ D T EP P Sbjct: 94 EVDHGPEGTLAWDAGDQTLEPGP 116 >gi|169171432 PREDICTED: similar to hCG2014367 [Homo sapiens] Length = 594 Score = 26.6 bits (57), Expect = 4.5 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Query: 20 RCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLG 56 R H++ C T HF+ + W Y E ++GLG Sbjct: 514 RAPVHTMNCGTFRAFHFSENSSCWGYK--MECEEGLG 548 >gi|239753062 PREDICTED: hypothetical protein [Homo sapiens] Length = 811 Score = 26.6 bits (57), Expect = 4.5 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Query: 20 RCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLG 56 R H++ C T HF+ + W Y E ++GLG Sbjct: 731 RAPVHTMNCGTFRAFHFSENSSCWGYK--MECEEGLG 765 >gi|169171899 PREDICTED: similar to hCG2014367 [Homo sapiens] Length = 594 Score = 26.6 bits (57), Expect = 4.5 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Query: 20 RCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLG 56 R H++ C T HF+ + W Y E ++GLG Sbjct: 514 RAPVHTMNCGTFRAFHFSENSSCWGYK--MECEEGLG 548 >gi|169171130 PREDICTED: hypothetical protein LOC100130600 [Homo sapiens] Length = 594 Score = 26.6 bits (57), Expect = 4.5 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Query: 20 RCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLG 56 R H++ C T HF+ + W Y E ++GLG Sbjct: 514 RAPVHTMNCGTFRAFHFSENSSCWGYK--MECEEGLG 548 >gi|239740980 PREDICTED: hypothetical protein XP_002344293 [Homo sapiens] Length = 616 Score = 26.6 bits (57), Expect = 4.5 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Query: 20 RCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLG 56 R H++ C T HF+ + W Y E ++GLG Sbjct: 536 RAPVHTMNCGTFRAFHFSENSSCWGYK--MECEEGLG 570 >gi|239509024 PREDICTED: similar to hCG2014367 [Homo sapiens] Length = 594 Score = 26.6 bits (57), Expect = 4.5 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%) Query: 20 RCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLG 56 R H++ C T HF+ + W Y E ++GLG Sbjct: 514 RAPVHTMNCGTFRAFHFSENSSCWGYK--MECEEGLG 548 >gi|169171742 PREDICTED: hypothetical protein LOC442676 [Homo sapiens] Length = 679 Score = 26.2 bits (56), Expect = 5.9 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%) Query: 20 RCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLG 56 R H++ C T HF + W Y E ++GLG Sbjct: 604 RAPVHTMKCGTFRAFHFLENSSCWGYK--MECEEGLG 638 >gi|169172340 PREDICTED: hypothetical protein LOC442676 [Homo sapiens] Length = 679 Score = 26.2 bits (56), Expect = 5.9 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%) Query: 20 RCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLG 56 R H++ C T HF + W Y E ++GLG Sbjct: 604 RAPVHTMKCGTFRAFHFLENSSCWGYK--MECEEGLG 638 >gi|169170016 PREDICTED: hypothetical protein LOC442676 [Homo sapiens] Length = 679 Score = 26.2 bits (56), Expect = 5.9 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%) Query: 20 RCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLG 56 R H++ C T HF + W Y E ++GLG Sbjct: 604 RAPVHTMKCGTFRAFHFLENSSCWGYK--MECEEGLG 638 >gi|239508816 PREDICTED: hypothetical protein LOC442676 [Homo sapiens] Length = 679 Score = 26.2 bits (56), Expect = 5.9 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%) Query: 20 RCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDGLG 56 R H++ C T HF + W Y E ++GLG Sbjct: 604 RAPVHTMKCGTFRAFHFLENSSCWGYK--MECEEGLG 638 >gi|108773804 Fraser syndrome 1 [Homo sapiens] Length = 4011 Score = 26.2 bits (56), Expect = 5.9 Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%) Query: 7 PGCRDGLIVEEGQRCRCHSLACNTC 31 P C G E G +CHS +C TC Sbjct: 844 PDCPSGYYAERGACKKCHS-SCRTC 867 >gi|169790973 parkin isoform 3 [Homo sapiens] Length = 316 Score = 25.8 bits (55), Expect = 7.7 Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 19/86 (22%) Query: 7 PGCRDGLIVEEGQR-CRC---HSLACNTCLCVHFTHKVTNWKYSKLKE----------VD 52 PGC GL+ E QR C + L C C + S + E VD Sbjct: 186 PGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQAYRVD 245 Query: 53 DGLGGAAAW-----EDVDSTAEPCPQ 73 + A W E + T +PCP+ Sbjct: 246 ERAAEQARWEAASKETIKKTTKPCPR 271 >gi|169790971 parkin isoform 2 [Homo sapiens] Length = 437 Score = 25.8 bits (55), Expect = 7.7 Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 19/86 (22%) Query: 7 PGCRDGLIVEEGQR-CRC---HSLACNTCLCVHFTHKVTNWKYSKLKE----------VD 52 PGC GL+ E QR C + L C C + S + E VD Sbjct: 307 PGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQAYRVD 366 Query: 53 DGLGGAAAW-----EDVDSTAEPCPQ 73 + A W E + T +PCP+ Sbjct: 367 ERAAEQARWEAASKETIKKTTKPCPR 392 >gi|169790969 parkin isoform 1 [Homo sapiens] Length = 465 Score = 25.8 bits (55), Expect = 7.7 Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 19/86 (22%) Query: 7 PGCRDGLIVEEGQR-CRC---HSLACNTCLCVHFTHKVTNWKYSKLKE----------VD 52 PGC GL+ E QR C + L C C + S + E VD Sbjct: 335 PGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAVFEASGTTTQAYRVD 394 Query: 53 DGLGGAAAW-----EDVDSTAEPCPQ 73 + A W E + T +PCP+ Sbjct: 395 ERAAEQARWEAASKETIKKTTKPCPR 420 >gi|126012573 low density lipoprotein-related protein 2 [Homo sapiens] Length = 4655 Score = 25.8 bits (55), Expect = 7.7 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 5/45 (11%) Query: 10 RDGLIVEEGQRCRCHSLACNTCLCVHFTHKVTNWKYSKLKEVDDG 54 R IV+ G+RC S C+ C+ WK + DG Sbjct: 2689 RKHCIVDNGERCGASSFTCSNGRCIS-----EEWKCDNDNDCGDG 2728 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.324 0.138 0.486 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,451,105 Number of Sequences: 37866 Number of extensions: 123228 Number of successful extensions: 370 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 19 Number of HSP's that attempted gapping in prelim test: 359 Number of HSP's gapped (non-prelim): 28 length of query: 73 length of database: 18,247,518 effective HSP length: 46 effective length of query: 27 effective length of database: 16,505,682 effective search space: 445653414 effective search space used: 445653414 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.