Guide to the Human Genome
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Search of human proteins with 239751326

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239751326 PREDICTED: hypothetical protein XP_002347792 [Homo
sapiens]
         (117 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756825 PREDICTED: hypothetical protein [Homo sapiens]           216   4e-57
gi|239751326 PREDICTED: hypothetical protein XP_002347792 [Homo ...   216   4e-57
gi|239745825 PREDICTED: hypothetical protein XP_002343558 [Homo ...   216   4e-57
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]         45   9e-06
gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor...    44   2e-05
gi|33356174 pinin, desmosome associated protein [Homo sapiens]         44   3e-05
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        42   1e-04
gi|34452686 ring finger protein, LIM domain interacting [Homo sa...    41   2e-04
gi|34452684 ring finger protein, LIM domain interacting [Homo sa...    41   2e-04
gi|239750235 PREDICTED: hypothetical protein [Homo sapiens]            41   2e-04
gi|239744535 PREDICTED: hypothetical protein XP_002343184 [Homo ...    41   2e-04
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]    40   3e-04
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]    40   3e-04
gi|8923106 zinc finger, CCHC domain containing 10 [Homo sapiens]       40   5e-04
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot...    39   9e-04
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot...    39   9e-04
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot...    39   9e-04
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot...    39   9e-04
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot...    39   9e-04
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote...    39   9e-04
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi...    39   9e-04
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap...    39   9e-04
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa...    39   0.001
gi|40807452 peroxisome proliferator-activated receptor gamma, co...    37   0.003
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo...    35   0.013
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo...    35   0.013
gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithora...    35   0.017
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]     35   0.017
gi|4505379 nuclear factor erythroid 2-like 1 [Homo sapiens]            35   0.017
gi|55953110 retinoblastoma protein-binding zinc finger protein i...    35   0.017

>gi|239756825 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 117

 Score =  216 bits (549), Expect = 4e-57
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MRFSRVCRVFSRFSLVLRRVFSRFSRVRTLVFSIFSLEKAFLKSSTRRRPLRLIRSARDS 60
           MRFSRVCRVFSRFSLVLRRVFSRFSRVRTLVFSIFSLEKAFLKSSTRRRPLRLIRSARDS
Sbjct: 1   MRFSRVCRVFSRFSLVLRRVFSRFSRVRTLVFSIFSLEKAFLKSSTRRRPLRLIRSARDS 60

Query: 61  SITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
           SITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS
Sbjct: 61  SITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117


>gi|239751326 PREDICTED: hypothetical protein XP_002347792 [Homo
           sapiens]
          Length = 117

 Score =  216 bits (549), Expect = 4e-57
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MRFSRVCRVFSRFSLVLRRVFSRFSRVRTLVFSIFSLEKAFLKSSTRRRPLRLIRSARDS 60
           MRFSRVCRVFSRFSLVLRRVFSRFSRVRTLVFSIFSLEKAFLKSSTRRRPLRLIRSARDS
Sbjct: 1   MRFSRVCRVFSRFSLVLRRVFSRFSRVRTLVFSIFSLEKAFLKSSTRRRPLRLIRSARDS 60

Query: 61  SITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
           SITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS
Sbjct: 61  SITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117


>gi|239745825 PREDICTED: hypothetical protein XP_002343558 [Homo
           sapiens]
          Length = 117

 Score =  216 bits (549), Expect = 4e-57
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MRFSRVCRVFSRFSLVLRRVFSRFSRVRTLVFSIFSLEKAFLKSSTRRRPLRLIRSARDS 60
           MRFSRVCRVFSRFSLVLRRVFSRFSRVRTLVFSIFSLEKAFLKSSTRRRPLRLIRSARDS
Sbjct: 1   MRFSRVCRVFSRFSLVLRRVFSRFSRVRTLVFSIFSLEKAFLKSSTRRRPLRLIRSARDS 60

Query: 61  SITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
           SITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS
Sbjct: 61  SITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117


>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
          Length = 2968

 Score = 45.4 bits (106), Expect = 9e-06
 Identities = 29/63 (46%), Positives = 41/63 (65%)

Query: 55   RSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSF 114
            R+A  +S +SS+S++SS  SSS+++SSS  S S SSS S S S+S S S     S + S 
Sbjct: 2608 RAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2667

Query: 115  TSS 117
            +SS
Sbjct: 2668 SSS 2670



 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 29/62 (46%), Positives = 40/62 (64%)

Query: 56   SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFT 115
            S+R +S  SS+S++SS  SSS+++SSS  S S SSS S S S+S S S     S + S +
Sbjct: 2606 SSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2665

Query: 116  SS 117
            SS
Sbjct: 2666 SS 2667



 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 28/60 (46%), Positives = 37/60 (61%)

Query: 44   SSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFS 103
            SS    P     S+  SS +SS+S++SS  SSS+++SSS  S S SSS S S S+S S S
Sbjct: 2606 SSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2665



 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 28/60 (46%), Positives = 38/60 (63%)

Query: 56   SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFT 115
            S+  SS +SS+S++SS  SSS+++SSS  S S SSS S S S+S S S     S + S T
Sbjct: 2614 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTT 2673



 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 28/58 (48%), Positives = 38/58 (65%)

Query: 60   SSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
            SS +SS+S++SS  SSS+++SSS  S S SSS S S S+S S S     S + S +SS
Sbjct: 2614 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2671



 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 25/49 (51%), Positives = 35/49 (71%)

Query: 56   SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSD 104
            S+  SS +SS+S++SS  SSS+++SSS  S S SSS S S S+S S +D
Sbjct: 2626 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTD 2674



 Score = 43.1 bits (100), Expect = 5e-05
 Identities = 28/62 (45%), Positives = 39/62 (62%)

Query: 56   SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFT 115
            S   SS +SS+S++SS  SSS+++SSS  S S SSS S S S+S S S     S + S +
Sbjct: 2611 SPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2670

Query: 116  SS 117
            S+
Sbjct: 2671 ST 2672



 Score = 42.7 bits (99), Expect = 6e-05
 Identities = 28/66 (42%), Positives = 40/66 (60%)

Query: 52   RLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLA 111
            R    A  SS +SS+S++SS  SSS+++SSS  S S SSS S S S+S S S     S +
Sbjct: 2608 RAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2667

Query: 112  GSFTSS 117
             S +++
Sbjct: 2668 SSSSTT 2673



 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 28/62 (45%), Positives = 36/62 (58%)

Query: 56   SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFT 115
            SA  S   S  S++SS  SSS+++SSS  S S SSS S S S+S S S     S + S +
Sbjct: 2603 SAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2662

Query: 116  SS 117
            SS
Sbjct: 2663 SS 2664



 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 24/49 (48%), Positives = 34/49 (69%)

Query: 56   SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSD 104
            S+  SS +SS+S++SS  SSS+++SSS  S S SSS S S S+S +  D
Sbjct: 2628 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDED 2676



 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 24/48 (50%), Positives = 33/48 (68%)

Query: 56   SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFS 103
            S+  SS +SS+S++SS  SSS+++SSS  S S SSS S S S +D  S
Sbjct: 2630 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDS 2677



 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 25/62 (40%), Positives = 38/62 (61%)

Query: 56   SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFT 115
            +A   + + ++S++SS  SSS+++SSS  S S SSS S S S+S S S     S + S +
Sbjct: 2604 AASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2663

Query: 116  SS 117
            SS
Sbjct: 2664 SS 2665



 Score = 38.5 bits (88), Expect = 0.001
 Identities = 25/60 (41%), Positives = 35/60 (58%)

Query: 58   RDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
            R+ S  SS + + +  SSS+++SSS  S S SSS S S S+S S S     S + S +SS
Sbjct: 2600 RNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2659



 Score = 38.5 bits (88), Expect = 0.001
 Identities = 22/48 (45%), Positives = 32/48 (66%)

Query: 56   SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFS 103
            S+  SS +SS+S++SS  SSS+++SSS  S S SSS S S +  +  S
Sbjct: 2631 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSS 2678



 Score = 38.5 bits (88), Expect = 0.001
 Identities = 23/49 (46%), Positives = 32/49 (65%)

Query: 56   SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSD 104
            S+  SS +SS+S++SS  SSS+++SSS  S S SSS S +   S   SD
Sbjct: 2634 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSD 2682



 Score = 38.1 bits (87), Expect = 0.002
 Identities = 25/63 (39%), Positives = 37/63 (58%)

Query: 55   RSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSF 114
            R+   +S  +++  +SS  SSS+++SSS  S S SSS S S S+S S S     S + S 
Sbjct: 2600 RNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2659

Query: 115  TSS 117
            +SS
Sbjct: 2660 SSS 2662



 Score = 37.0 bits (84), Expect = 0.003
 Identities = 22/49 (44%), Positives = 32/49 (65%)

Query: 56   SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSD 104
            S+  SS +SS+S++SS  SSS+++SSS  S S SSS +    +S S  D
Sbjct: 2635 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDD 2683



 Score = 37.0 bits (84), Expect = 0.003
 Identities = 23/57 (40%), Positives = 34/57 (59%)

Query: 56   SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAG 112
            S+  SS +SS+S++SS  SSS+++SSS  S S SSS +   S+  S  +      AG
Sbjct: 2636 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAG 2692



 Score = 36.6 bits (83), Expect = 0.004
 Identities = 22/48 (45%), Positives = 31/48 (64%)

Query: 56   SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFS 103
            S+  SS +SS+S++SS  SSS+++SSS  S S SSS S +     S S
Sbjct: 2633 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCS 2680



 Score = 30.8 bits (68), Expect = 0.24
 Identities = 20/55 (36%), Positives = 30/55 (54%)

Query: 63   TSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
            T   + +++   +++ ASSS  S S SSS S S S+S S S     S + S +SS
Sbjct: 2597 TGGRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2651



 Score = 30.8 bits (68), Expect = 0.24
 Identities = 13/38 (34%), Positives = 26/38 (68%)

Query: 56   SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPS 93
            S+  SS +SS+S++S+ +  S+ +S    +P+P++ PS
Sbjct: 2657 SSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAGPS 2694



 Score = 29.3 bits (64), Expect = 0.70
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 29/83 (34%)

Query: 64   SSTSTASSDESSSAAASSSG-----------------------------RSPSPSSSPSF 94
            SS+S++S   SSS+++SSSG                             R+ SP+SS S 
Sbjct: 2559 SSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPASSSSS 2618

Query: 95   SGSASDSFSDLLMLSLAGSFTSS 117
            S S+S S S     S + S +SS
Sbjct: 2619 SSSSSSSSSSSSSSSSSSSSSSS 2641



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 16/30 (53%), Positives = 23/30 (76%), Gaps = 1/30 (3%)

Query: 71   SDESSSAAASSSGRSPSPSSSPSFSGSASD 100
            ++ES S+++SSSG S S SSS S SGS ++
Sbjct: 2554 AEESESSSSSSSGSSSSSSSSSS-SGSETE 2582


>gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax
           homolog, Drosophila); translocated to, 3 [Homo sapiens]
          Length = 568

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 28/54 (51%), Positives = 38/54 (70%), Gaps = 1/54 (1%)

Query: 50  PLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFS 103
           P R I ++  SS +SS+S++SS  SSS+++SSS  S S SSS S S S+S SFS
Sbjct: 142 PNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-SSSSSTSFS 194



 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 26/66 (39%), Positives = 39/66 (59%)

Query: 38  EKAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGS 97
           EK    + T     +L+++  D + +  TS++SS  SSS+++SSS  S S SSS S S S
Sbjct: 120 EKLTFNNPTEDFRRKLLKAGGDPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 179

Query: 98  ASDSFS 103
           +S S S
Sbjct: 180 SSSSSS 185



 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 27/57 (47%), Positives = 36/57 (63%)

Query: 47  RRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFS 103
           RR+ L+       S  TSS+S++SS  SSS+++SSS  S S SSS S S S+S S S
Sbjct: 132 RRKLLKAGGDPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 188



 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 26/52 (50%), Positives = 34/52 (65%)

Query: 56  SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLM 107
           S+  SS +SS+S++SS  SSS+++SSS  S S SSS S S S S S    LM
Sbjct: 149 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKPHKLM 200



 Score = 30.8 bits (68), Expect = 0.24
 Identities = 20/44 (45%), Positives = 27/44 (61%)

Query: 74  SSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
           SSS+++SSS  S S SSS S S S+S S S     S + S ++S
Sbjct: 149 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTS 192



 Score = 30.0 bits (66), Expect = 0.41
 Identities = 21/49 (42%), Positives = 25/49 (51%)

Query: 69  ASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
           A  D + S   SSS  S S SSS S S S+S S S     S + S +SS
Sbjct: 138 AGGDPNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 186



 Score = 30.0 bits (66), Expect = 0.41
 Identities = 20/47 (42%), Positives = 28/47 (59%)

Query: 71  SDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
           S  +SS+++SSS  S S SSS S S S+S S S     S + S +S+
Sbjct: 145 SIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSST 191


>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
          Length = 717

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 28/69 (40%), Positives = 39/69 (56%)

Query: 36  SLEKAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFS 95
           S  K   +S +R R       +R  S +SS+S++SS  SSS ++SSSG S S SSS S S
Sbjct: 552 SKSKTKTRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSS 611

Query: 96  GSASDSFSD 104
            ++  S  D
Sbjct: 612 STSGSSSRD 620



 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 30/75 (40%), Positives = 41/75 (54%)

Query: 43  KSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSF 102
           KS T+ R     R+   +S + S S++SS  SSS+ +SSSG S S  SS S S S+S S 
Sbjct: 553 KSKTKTRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSS 612

Query: 103 SDLLMLSLAGSFTSS 117
           +       + S TSS
Sbjct: 613 TSGSSSRDSSSSTSS 627



 Score = 37.4 bits (85), Expect = 0.003
 Identities = 25/58 (43%), Positives = 33/58 (56%)

Query: 44  SSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDS 101
           S +R R      S+  S+ +SS S++SS  SSS ++SSS  S S SSS   S S S S
Sbjct: 571 SKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSS 628



 Score = 36.6 bits (83), Expect = 0.004
 Identities = 23/48 (47%), Positives = 29/48 (60%)

Query: 56  SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFS 103
           S+  SS TSS+S +SS   SS++ SSS  S S S S S   S+S S S
Sbjct: 581 SSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSS 628



 Score = 35.8 bits (81), Expect = 0.007
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 43  KSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSF 102
           K+ TR R     R+ + S   S +S++SS  SSS ++SS   S S SSS   S S+S S 
Sbjct: 555 KTKTRSRSRGRARN-KTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSST 613

Query: 103 SDLLMLSLAGSFTSS 117
           S       + S +SS
Sbjct: 614 SGSSSRDSSSSTSSS 628



 Score = 35.0 bits (79), Expect = 0.013
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 43  KSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSF 102
           K+S  R       S+  SS +SS+ ++SS  SSS+ +SSS  S +  SS   S S++ S 
Sbjct: 569 KTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSS 628

Query: 103 SD 104
           S+
Sbjct: 629 SE 630



 Score = 33.5 bits (75), Expect = 0.037
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 56  SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFS 103
           ++  S  +SS+ ++SS  SSS+++S+SG S   SSS + S S S S S
Sbjct: 588 TSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSRS 635


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 24/45 (53%), Positives = 32/45 (71%)

Query: 55   RSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSAS 99
            R  R SS +SS+S++SS  SSS+++SSS  S S SSS S S S+S
Sbjct: 2603 RKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2647



 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 24/44 (54%), Positives = 32/44 (72%)

Query: 58   RDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDS 101
            R SS +SS+S++SS  SSS+++SSS  S S SSS S S S+S S
Sbjct: 2605 RRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2648



 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 24/45 (53%), Positives = 32/45 (71%)

Query: 55   RSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSAS 99
            RS+  SS +SS+S++SS  SSS+++SSS  S S SSS S S S S
Sbjct: 2606 RSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPS 2650



 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 47   RRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPS 93
            +RR      S+  SS +SS+S++SS  SSS+++SSS  S S SSSPS
Sbjct: 2604 KRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPS 2650



 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 25/55 (45%), Positives = 34/55 (61%)

Query: 49   RPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFS 103
            RP     + R    +SS+S++SS  SSS+++SSS  S S SSS S S S+S S S
Sbjct: 2594 RPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2648



 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 23/42 (54%), Positives = 31/42 (73%)

Query: 60   SSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDS 101
            SS +SS+S++SS  SSS+++SSS  S S SSS S S S+S S
Sbjct: 2609 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPS 2650



 Score = 37.4 bits (85), Expect = 0.003
 Identities = 22/46 (47%), Positives = 31/46 (67%)

Query: 48   RRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPS 93
            +R  R   S+  SS +SS+S++SS  SSS+++SSS  S S SSS S
Sbjct: 2602 KRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2647



 Score = 36.6 bits (83), Expect = 0.004
 Identities = 20/41 (48%), Positives = 29/41 (70%)

Query: 56   SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSG 96
            S+  SS +SS+S++SS  SSS+++SSS  S S S SP+  G
Sbjct: 2615 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPG 2655



 Score = 35.4 bits (80), Expect = 0.010
 Identities = 22/54 (40%), Positives = 28/54 (51%)

Query: 50   PLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFS 103
            P   +R  R    T +     S  SSS+++SSS  S S SSS S S S+S S S
Sbjct: 2586 PKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2639



 Score = 35.4 bits (80), Expect = 0.010
 Identities = 21/45 (46%), Positives = 30/45 (66%)

Query: 47   RRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSS 91
            R+R      S+  SS +SS+S++SS  SSS+++SSS  S S SSS
Sbjct: 2603 RKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2647



 Score = 33.9 bits (76), Expect = 0.028
 Identities = 19/47 (40%), Positives = 30/47 (63%)

Query: 51   LRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGS 97
            L  ++ A++   +SS+S++SS  SSS+++SSS  S   SSS S   S
Sbjct: 2521 LAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSS 2567



 Score = 33.5 bits (75), Expect = 0.037
 Identities = 18/36 (50%), Positives = 26/36 (72%)

Query: 63   TSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSA 98
            +SS+S++SS  SSS+++SSS  S S SSS    GS+
Sbjct: 2532 SSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSS 2567



 Score = 33.1 bits (74), Expect = 0.048
 Identities = 20/48 (41%), Positives = 27/48 (56%)

Query: 57   ARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSD 104
            A+  S  ++   A    SSS+++SSS  S S SSS S S S+  S SD
Sbjct: 2515 AQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSD 2562



 Score = 32.7 bits (73), Expect = 0.063
 Identities = 16/37 (43%), Positives = 25/37 (67%)

Query: 56   SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSP 92
            S+  SS +SS+S++SS  SSS+++S S   P P + P
Sbjct: 2624 SSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALP 2660



 Score = 32.3 bits (72), Expect = 0.082
 Identities = 18/32 (56%), Positives = 22/32 (68%)

Query: 70   SSDESSSAAASSSGRSPSPSSSPSFSGSASDS 101
            SS  SSS+++SSS  S S SSS S   S+SDS
Sbjct: 2532 SSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDS 2563



 Score = 32.3 bits (72), Expect = 0.082
 Identities = 18/44 (40%), Positives = 28/44 (63%)

Query: 56   SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSAS 99
            S+  SS +SS+S++SS  SSS+++SSS  SP+     +    AS
Sbjct: 2621 SSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPAS 2664



 Score = 31.6 bits (70), Expect = 0.14
 Identities = 18/36 (50%), Positives = 25/36 (69%)

Query: 64   SSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSAS 99
            SS+S++SS  SSS+++SSS  S S  SS S S  +S
Sbjct: 2532 SSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSS 2567



 Score = 30.8 bits (68), Expect = 0.24
 Identities = 22/62 (35%), Positives = 30/62 (48%)

Query: 56   SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFT 115
            + R+      T       SSS+++SSS  S S SSS S S S+S S S     S + S +
Sbjct: 2589 AVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2648

Query: 116  SS 117
             S
Sbjct: 2649 PS 2650



 Score = 30.4 bits (67), Expect = 0.31
 Identities = 18/37 (48%), Positives = 23/37 (62%)

Query: 69   ASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDL 105
            +SS  SSS+++SSS  S S SSS S S S+    S L
Sbjct: 2532 SSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSL 2568



 Score = 30.0 bits (66), Expect = 0.41
 Identities = 17/36 (47%), Positives = 23/36 (63%)

Query: 66   TSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDS 101
            +S++SS  SSS+++SSS  S S SS  S S S   S
Sbjct: 2532 SSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSS 2567



 Score = 29.6 bits (65), Expect = 0.53
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 9/53 (16%)

Query: 55  RSARDSSITSSTSTASSDESSSAAASSS---------GRSPSPSSSPSFSGSA 98
           +S R    TS+ S +SSD S S + S++         GRSPSP+S     G A
Sbjct: 256 KSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPASGRRGEGDA 308



 Score = 29.6 bits (65), Expect = 0.53
 Identities = 17/36 (47%), Positives = 23/36 (63%)

Query: 68   TASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFS 103
            ++SS  SSS+++SSS  S S SSS   S S S+  S
Sbjct: 2532 SSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSS 2567



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 19/50 (38%), Positives = 25/50 (50%)

Query: 67   STASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTS 116
            ST +   S+ AA   +    S SSS S S S+S S S     S +GS +S
Sbjct: 2512 STGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSS 2561


>gi|34452686 ring finger protein, LIM domain interacting [Homo
           sapiens]
          Length = 624

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 2/101 (1%)

Query: 16  VLRRVFSRFSRVRTLVFSIFSLEKAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDESS 75
           +LR++ + F  +   ++S    E      S R       RS R  S    +S+ SS  SS
Sbjct: 405 MLRQIMTGFGELSYFMYSDSDSEPTG-SVSNRNMERAESRSGRGGS-GGGSSSGSSSSSS 462

Query: 76  SAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTS 116
           S+++SSS  S S S S S  G +S++ SDL   S  GS +S
Sbjct: 463 SSSSSSSSSSSSSSPSSSSGGESSETSSDLFEGSNEGSSSS 503



 Score = 30.0 bits (66), Expect = 0.41
 Identities = 27/69 (39%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 56  SARDSSITSSTSTAS-------SDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLML 108
           S  DS  T S S  +       S    S   SSSG S S SSS S S S+S S S     
Sbjct: 422 SDSDSEPTGSVSNRNMERAESRSGRGGSGGGSSSGSSSSSSSSSSSSSSSSSSSSPSSSS 481

Query: 109 SLAGSFTSS 117
               S TSS
Sbjct: 482 GGESSETSS 490


>gi|34452684 ring finger protein, LIM domain interacting [Homo
           sapiens]
          Length = 624

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 34/101 (33%), Positives = 50/101 (49%), Gaps = 2/101 (1%)

Query: 16  VLRRVFSRFSRVRTLVFSIFSLEKAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDESS 75
           +LR++ + F  +   ++S    E      S R       RS R  S    +S+ SS  SS
Sbjct: 405 MLRQIMTGFGELSYFMYSDSDSEPTG-SVSNRNMERAESRSGRGGS-GGGSSSGSSSSSS 462

Query: 76  SAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTS 116
           S+++SSS  S S S S S  G +S++ SDL   S  GS +S
Sbjct: 463 SSSSSSSSSSSSSSPSSSSGGESSETSSDLFEGSNEGSSSS 503



 Score = 30.0 bits (66), Expect = 0.41
 Identities = 27/69 (39%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 56  SARDSSITSSTSTAS-------SDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLML 108
           S  DS  T S S  +       S    S   SSSG S S SSS S S S+S S S     
Sbjct: 422 SDSDSEPTGSVSNRNMERAESRSGRGGSGGGSSSGSSSSSSSSSSSSSSSSSSSSPSSSS 481

Query: 109 SLAGSFTSS 117
               S TSS
Sbjct: 482 GGESSETSS 490


>gi|239750235 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 257

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 5/62 (8%)

Query: 61  SITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLS-----LAGSFT 115
           S + S+S++ S  S S++ SSS   P P   PSFS S+S SF  LL+L      L  SF+
Sbjct: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFS 234

Query: 116 SS 117
           SS
Sbjct: 235 SS 236


>gi|239744535 PREDICTED: hypothetical protein XP_002343184 [Homo
           sapiens]
          Length = 257

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 5/62 (8%)

Query: 61  SITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLS-----LAGSFT 115
           S + S+S++ S  S S++ SSS   P P   PSFS S+S SF  LL+L      L  SF+
Sbjct: 175 SSSPSSSSSPSYSSPSSSPSSSSPLPPPPPPPSFSSSSSSSFPFLLLLPLFFLLLLSSFS 234

Query: 116 SS 117
           SS
Sbjct: 235 SS 236


>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
          Length = 1013

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 8/59 (13%)

Query: 56  SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFS--------GSASDSFSDLL 106
           +A  SS +SS+S++SS  S+S+++SSS  SP P+S P+ S        G  + +FSD+L
Sbjct: 82  TAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPASSPPRVLELPGVPAAAFSDVL 140



 Score = 34.3 bits (77), Expect = 0.022
 Identities = 25/74 (33%), Positives = 41/74 (55%)

Query: 39  KAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSA 98
           +A L S+    P     +A + + T++ S++SS  SSS+++SSS  S S SSS S   ++
Sbjct: 57  EALLTSAPLPLPPATGGAAPNPATTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPAS 116

Query: 99  SDSFSDLLMLSLAG 112
             + S   +L L G
Sbjct: 117 PPASSPPRVLELPG 130



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 22/69 (31%), Positives = 36/69 (52%)

Query: 35  FSLEKAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSF 94
           F   ++ L +S+      L+ SA      ++   A +  +++AA+SSS  S S SSS S 
Sbjct: 41  FPAHRSVLAASSPFFREALLTSAPLPLPPATGGAAPNPATTTAASSSSSSSSSSSSSSSS 100

Query: 95  SGSASDSFS 103
           + S+S S S
Sbjct: 101 ASSSSSSSS 109


>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
          Length = 1013

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 8/59 (13%)

Query: 56  SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFS--------GSASDSFSDLL 106
           +A  SS +SS+S++SS  S+S+++SSS  SP P+S P+ S        G  + +FSD+L
Sbjct: 82  TAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPASSPPRVLELPGVPAAAFSDVL 140



 Score = 34.3 bits (77), Expect = 0.022
 Identities = 25/74 (33%), Positives = 41/74 (55%)

Query: 39  KAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSA 98
           +A L S+    P     +A + + T++ S++SS  SSS+++SSS  S S SSS S   ++
Sbjct: 57  EALLTSAPLPLPPATGGAAPNPATTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPAS 116

Query: 99  SDSFSDLLMLSLAG 112
             + S   +L L G
Sbjct: 117 PPASSPPRVLELPG 130



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 22/69 (31%), Positives = 36/69 (52%)

Query: 35  FSLEKAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSF 94
           F   ++ L +S+      L+ SA      ++   A +  +++AA+SSS  S S SSS S 
Sbjct: 41  FPAHRSVLAASSPFFREALLTSAPLPLPPATGGAAPNPATTTAASSSSSSSSSSSSSSSS 100

Query: 95  SGSASDSFS 103
           + S+S S S
Sbjct: 101 ASSSSSSSS 109


>gi|8923106 zinc finger, CCHC domain containing 10 [Homo sapiens]
          Length = 170

 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 22/49 (44%), Positives = 32/49 (65%)

Query: 56  SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSD 104
           S+ + S T  +S++SS  +SS  +SSS  S S SSS S S +++DS SD
Sbjct: 112 SSSEDSDTDESSSSSSSSASSTTSSSSSDSDSDSSSSSSSSTSTDSSSD 160



 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 30/63 (47%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 56  SARDSSITSS-TSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSF 114
           SA DSS  S  TST+SS E S    SSS  S S SS+ S S S SDS S     S   + 
Sbjct: 97  SASDSSSESEETSTSSSSEDSDTDESSSSSSSSASSTTSSSSSDSDSDSSSSSSSSTSTD 156

Query: 115 TSS 117
           +SS
Sbjct: 157 SSS 159



 Score = 36.2 bits (82), Expect = 0.006
 Identities = 25/82 (30%), Positives = 44/82 (53%)

Query: 36  SLEKAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFS 95
           S+ +  ++   +++  + + S+  SS  SS S +SS+   ++ +SSS  S +  SS S S
Sbjct: 68  SIGETNVERKAKKKRSKSVTSSSSSSSDSSASDSSSESEETSTSSSSEDSDTDESSSSSS 127

Query: 96  GSASDSFSDLLMLSLAGSFTSS 117
            SAS + S     S + S +SS
Sbjct: 128 SSASSTTSSSSSDSDSDSSSSS 149



 Score = 36.2 bits (82), Expect = 0.006
 Identities = 22/45 (48%), Positives = 28/45 (62%)

Query: 56  SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASD 100
           S  D S +SS+S+ASS  SSS++ S S  S S SSS S   S+ D
Sbjct: 117 SDTDESSSSSSSSASSTTSSSSSDSDSDSSSSSSSSTSTDSSSDD 161



 Score = 29.3 bits (64), Expect = 0.70
 Identities = 15/37 (40%), Positives = 23/37 (62%)

Query: 56  SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSP 92
           S+  SS TSS+S+ S  +SSS+++SS+    S    P
Sbjct: 127 SSSASSTTSSSSSDSDSDSSSSSSSSTSTDSSSDDEP 163



 Score = 28.9 bits (63), Expect = 0.91
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 40  AFLKSSTRRRPLRLI--RSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGS 97
           A LK + + +  RL+  +S  ++++        S   +S+++SSS  S S SSS S   S
Sbjct: 50  AELKKALKEKENRLLLQQSIGETNVERKAKKKRSKSVTSSSSSSSDSSASDSSSESEETS 109

Query: 98  ASDSFSD 104
            S S  D
Sbjct: 110 TSSSSED 116


>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
           S1 isoform 6 [Homo sapiens]
          Length = 305

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 27/48 (56%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 55  RSARDSSITSSTSTASSDESSSAAASS-SGRSPSPSSSPSFSGSASDS 101
           RS+  SS  SSTST SS  SSS++ASS SG S +  SS S S S S S
Sbjct: 78  RSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125



 Score = 36.6 bits (83), Expect = 0.004
 Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 7/68 (10%)

Query: 36  SLEKAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFS 95
           S EK   +  TR+R     RSA  SS +SST + SS  SSS +++S+G S   SSS + S
Sbjct: 52  SSEKDRGRDKTRKR-----RSA--SSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASS 104

Query: 96  GSASDSFS 103
            S S S S
Sbjct: 105 RSGSSSTS 112



 Score = 32.0 bits (71), Expect = 0.11
 Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 44  SSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSAS 99
           SSTR R      S   +S T S+S +SS  +SS + SSS    S SSS S S S S
Sbjct: 73  SSTRSRSSSTSSSGSSTS-TGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127



 Score = 28.9 bits (63), Expect = 0.91
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 63  TSSTSTASSDESS----SAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
           T    +ASS  SS    S++ SSSG S S  SS   S S++ S S     S + S +SS
Sbjct: 62  TRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120


>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
           S1 isoform 2 [Homo sapiens]
          Length = 305

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 27/48 (56%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 55  RSARDSSITSSTSTASSDESSSAAASS-SGRSPSPSSSPSFSGSASDS 101
           RS+  SS  SSTST SS  SSS++ASS SG S +  SS S S S S S
Sbjct: 78  RSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125



 Score = 36.6 bits (83), Expect = 0.004
 Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 7/68 (10%)

Query: 36  SLEKAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFS 95
           S EK   +  TR+R     RSA  SS +SST + SS  SSS +++S+G S   SSS + S
Sbjct: 52  SSEKDRGRDKTRKR-----RSA--SSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASS 104

Query: 96  GSASDSFS 103
            S S S S
Sbjct: 105 RSGSSSTS 112



 Score = 32.0 bits (71), Expect = 0.11
 Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 44  SSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSAS 99
           SSTR R      S   +S T S+S +SS  +SS + SSS    S SSS S S S S
Sbjct: 73  SSTRSRSSSTSSSGSSTS-TGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127



 Score = 28.9 bits (63), Expect = 0.91
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 63  TSSTSTASSDESS----SAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
           T    +ASS  SS    S++ SSSG S S  SS   S S++ S S     S + S +SS
Sbjct: 62  TRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120


>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
           S1 [Homo sapiens]
          Length = 305

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 27/48 (56%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 55  RSARDSSITSSTSTASSDESSSAAASS-SGRSPSPSSSPSFSGSASDS 101
           RS+  SS  SSTST SS  SSS++ASS SG S +  SS S S S S S
Sbjct: 78  RSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125



 Score = 35.8 bits (81), Expect = 0.007
 Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 36  SLEKAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDE---SSSAAASSSGRSPSPSSSP 92
           S EK   +  TR+R      S+   S +SSTS++ S     SSS ++SSS  S S SSS 
Sbjct: 52  SSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSST 111

Query: 93  SFSGSASDS 101
           S S S+S S
Sbjct: 112 SRSSSSSSS 120



 Score = 32.0 bits (71), Expect = 0.11
 Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 44  SSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSAS 99
           SSTR R      S   +S T S+S +SS  +SS + SSS    S SSS S S S S
Sbjct: 73  SSTRSRSSSTSSSGSSTS-TGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127



 Score = 30.0 bits (66), Expect = 0.41
 Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 36  SLEKAFLKSST---RRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSP 92
           S +K   K S+   R R     R +  S  +S+ S +SS  SS ++ S+   S S SSS 
Sbjct: 43  SKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSA 102

Query: 93  SF-SGSASDSFS 103
           S  SGS+S S S
Sbjct: 103 SSRSGSSSTSRS 114



 Score = 28.9 bits (63), Expect = 0.91
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 63  TSSTSTASSDESS----SAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
           T    +ASS  SS    S++ SSSG S S  SS   S S++ S S     S + S +SS
Sbjct: 62  TRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120


>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
           S1 [Homo sapiens]
          Length = 305

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 27/48 (56%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 55  RSARDSSITSSTSTASSDESSSAAASS-SGRSPSPSSSPSFSGSASDS 101
           RS+  SS  SSTST SS  SSS++ASS SG S +  SS S S S S S
Sbjct: 78  RSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125



 Score = 35.8 bits (81), Expect = 0.007
 Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 36  SLEKAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDE---SSSAAASSSGRSPSPSSSP 92
           S EK   +  TR+R      S+   S +SSTS++ S     SSS ++SSS  S S SSS 
Sbjct: 52  SSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSST 111

Query: 93  SFSGSASDS 101
           S S S+S S
Sbjct: 112 SRSSSSSSS 120



 Score = 32.0 bits (71), Expect = 0.11
 Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 44  SSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSAS 99
           SSTR R      S   +S T S+S +SS  +SS + SSS    S SSS S S S S
Sbjct: 73  SSTRSRSSSTSSSGSSTS-TGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127



 Score = 30.0 bits (66), Expect = 0.41
 Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 36  SLEKAFLKSST---RRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSP 92
           S +K   K S+   R R     R +  S  +S+ S +SS  SS ++ S+   S S SSS 
Sbjct: 43  SKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSA 102

Query: 93  SF-SGSASDSFS 103
           S  SGS+S S S
Sbjct: 103 SSRSGSSSTSRS 114



 Score = 28.9 bits (63), Expect = 0.91
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 63  TSSTSTASSDESS----SAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
           T    +ASS  SS    S++ SSSG S S  SS   S S++ S S     S + S +SS
Sbjct: 62  TRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120


>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
           S1 [Homo sapiens]
          Length = 305

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 27/48 (56%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 55  RSARDSSITSSTSTASSDESSSAAASS-SGRSPSPSSSPSFSGSASDS 101
           RS+  SS  SSTST SS  SSS++ASS SG S +  SS S S S S S
Sbjct: 78  RSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125



 Score = 35.8 bits (81), Expect = 0.007
 Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 36  SLEKAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDE---SSSAAASSSGRSPSPSSSP 92
           S EK   +  TR+R      S+   S +SSTS++ S     SSS ++SSS  S S SSS 
Sbjct: 52  SSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSST 111

Query: 93  SFSGSASDS 101
           S S S+S S
Sbjct: 112 SRSSSSSSS 120



 Score = 32.0 bits (71), Expect = 0.11
 Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 44  SSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSAS 99
           SSTR R      S   +S T S+S +SS  +SS + SSS    S SSS S S S S
Sbjct: 73  SSTRSRSSSTSSSGSSTS-TGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127



 Score = 30.0 bits (66), Expect = 0.41
 Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 36  SLEKAFLKSST---RRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSP 92
           S +K   K S+   R R     R +  S  +S+ S +SS  SS ++ S+   S S SSS 
Sbjct: 43  SKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSA 102

Query: 93  SF-SGSASDSFS 103
           S  SGS+S S S
Sbjct: 103 SSRSGSSSTSRS 114



 Score = 28.9 bits (63), Expect = 0.91
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 63  TSSTSTASSDESS----SAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
           T    +ASS  SS    S++ SSSG S S  SS   S S++ S S     S + S +SS
Sbjct: 62  TRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120


>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
           S1 isoform 3 [Homo sapiens]
          Length = 305

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 27/48 (56%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 55  RSARDSSITSSTSTASSDESSSAAASS-SGRSPSPSSSPSFSGSASDS 101
           RS+  SS  SSTST SS  SSS++ASS SG S +  SS S S S S S
Sbjct: 78  RSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125



 Score = 35.8 bits (81), Expect = 0.007
 Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 36  SLEKAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDE---SSSAAASSSGRSPSPSSSP 92
           S EK   +  TR+R      S+   S +SSTS++ S     SSS ++SSS  S S SSS 
Sbjct: 52  SSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSST 111

Query: 93  SFSGSASDS 101
           S S S+S S
Sbjct: 112 SRSSSSSSS 120



 Score = 32.0 bits (71), Expect = 0.11
 Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 44  SSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSAS 99
           SSTR R      S   +S T S+S +SS  +SS + SSS    S SSS S S S S
Sbjct: 73  SSTRSRSSSTSSSGSSTS-TGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127



 Score = 30.0 bits (66), Expect = 0.41
 Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 36  SLEKAFLKSST---RRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSP 92
           S +K   K S+   R R     R +  S  +S+ S +SS  SS ++ S+   S S SSS 
Sbjct: 43  SKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSA 102

Query: 93  SF-SGSASDSFS 103
           S  SGS+S S S
Sbjct: 103 SSRSGSSSTSRS 114



 Score = 28.9 bits (63), Expect = 0.91
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 63  TSSTSTASSDESS----SAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
           T    +ASS  SS    S++ SSSG S S  SS   S S++ S S     S + S +SS
Sbjct: 62  TRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120


>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
           sapiens]
          Length = 305

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 27/48 (56%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 55  RSARDSSITSSTSTASSDESSSAAASS-SGRSPSPSSSPSFSGSASDS 101
           RS+  SS  SSTST SS  SSS++ASS SG S +  SS S S S S S
Sbjct: 78  RSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125



 Score = 36.6 bits (83), Expect = 0.004
 Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 7/68 (10%)

Query: 36  SLEKAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFS 95
           S EK   +  TR+R     RSA  SS +SST + SS  SSS +++S+G S   SSS + S
Sbjct: 52  SSEKDRGRDKTRKR-----RSA--SSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASS 104

Query: 96  GSASDSFS 103
            S S S S
Sbjct: 105 RSGSSSTS 112



 Score = 32.0 bits (71), Expect = 0.11
 Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 44  SSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSAS 99
           SSTR R      S   +S T S+S +SS  +SS + SSS    S SSS S S S S
Sbjct: 73  SSTRSRSSSTSSSGSSTS-TGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127



 Score = 28.9 bits (63), Expect = 0.91
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 63  TSSTSTASSDESS----SAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
           T    +ASS  SS    S++ SSSG S S  SS   S S++ S S     S + S +SS
Sbjct: 62  TRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120


>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
           sapiens]
          Length = 305

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 27/48 (56%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 55  RSARDSSITSSTSTASSDESSSAAASS-SGRSPSPSSSPSFSGSASDS 101
           RS+  SS  SSTST SS  SSS++ASS SG S +  SS S S S S S
Sbjct: 78  RSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPS 125



 Score = 36.6 bits (83), Expect = 0.004
 Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 7/68 (10%)

Query: 36  SLEKAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFS 95
           S EK   +  TR+R     RSA  SS +SST + SS  SSS +++S+G S   SSS + S
Sbjct: 52  SSEKDRGRDKTRKR-----RSA--SSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASS 104

Query: 96  GSASDSFS 103
            S S S S
Sbjct: 105 RSGSSSTS 112



 Score = 32.0 bits (71), Expect = 0.11
 Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 44  SSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSAS 99
           SSTR R      S   +S T S+S +SS  +SS + SSS    S SSS S S S S
Sbjct: 73  SSTRSRSSSTSSSGSSTS-TGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPS 127



 Score = 28.9 bits (63), Expect = 0.91
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 63  TSSTSTASSDESS----SAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
           T    +ASS  SS    S++ SSSG S S  SS   S S++ S S     S + S +SS
Sbjct: 62  TRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSS 120


>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
            sapiens]
          Length = 2881

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 24/48 (50%), Positives = 32/48 (66%)

Query: 56   SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFS 103
            S+R SS +SS+S + S   SS+++SSS  S S SSS S S S+S S S
Sbjct: 2144 SSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSS 2191



 Score = 37.0 bits (84), Expect = 0.003
 Identities = 26/62 (41%), Positives = 34/62 (54%)

Query: 56   SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFT 115
            S+ DS   S  S+ SS  SSS+++SS   S S SSS S S  +S S S     S + S +
Sbjct: 2130 SSSDSDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSS 2189

Query: 116  SS 117
            SS
Sbjct: 2190 SS 2191



 Score = 35.8 bits (81), Expect = 0.007
 Identities = 21/45 (46%), Positives = 29/45 (64%)

Query: 56   SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASD 100
            S+  SS + S S +SS  SSS +++SS  S S SSS S S S+S+
Sbjct: 2150 SSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSE 2194



 Score = 35.4 bits (80), Expect = 0.010
 Identities = 24/59 (40%), Positives = 32/59 (54%)

Query: 43   KSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDS 101
            +SS   R      S+  S   S +S++SS   SSA++SSS  + S SSS S S   SDS
Sbjct: 2140 RSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSEESDS 2198



 Score = 35.4 bits (80), Expect = 0.010
 Identities = 22/45 (48%), Positives = 29/45 (64%)

Query: 60   SSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSD 104
            SS +SS S + S  SSS+++S S  S S SSS S S S+S S S+
Sbjct: 2150 SSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSE 2194



 Score = 32.0 bits (71), Expect = 0.11
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 55   RSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSF 114
            R  +  S +SS S + S+ SS ++ SSS  S S S S S SGS+S S S     S + S 
Sbjct: 2122 RVHKRGSESSSDSDSDSERSSCSSRSSSS-SSSSSCSHSRSGSSSSSSSSCSSASSSSSS 2180

Query: 115  TSS 117
            ++S
Sbjct: 2181 STS 2183


>gi|40807452 peroxisome proliferator-activated receptor gamma,
            coactivator-related 1 [Homo sapiens]
          Length = 1664

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 19/34 (55%), Positives = 26/34 (76%)

Query: 55   RSARDSSITSSTSTASSDESSSAAASSSGRSPSP 88
            RS R SS +SS+S++SS  SSS+++ S  RSPSP
Sbjct: 1475 RSRRCSSSSSSSSSSSSSSSSSSSSRSRSRSPSP 1508



 Score = 32.7 bits (73), Expect = 0.063
 Identities = 17/29 (58%), Positives = 23/29 (79%)

Query: 64   SSTSTASSDESSSAAASSSGRSPSPSSSP 92
            SS+S++SS  SSS+++SSS RS S S SP
Sbjct: 1480 SSSSSSSSSSSSSSSSSSSSRSRSRSPSP 1508



 Score = 30.4 bits (67), Expect = 0.31
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 55   RSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSP 92
            R     S++S ++  S   SSS+++SSS RS S S SP
Sbjct: 1423 RGRNSRSVSSGSNRTSEASSSSSSSSSSSRSRSRSLSP 1460



 Score = 30.0 bits (66), Expect = 0.41
 Identities = 20/42 (47%), Positives = 25/42 (59%)

Query: 58   RDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSAS 99
            R SS +SS  +     SSS+++SSS  S S SSS S S S S
Sbjct: 1466 RRSSCSSSGRSRRCSSSSSSSSSSSSSSSSSSSSRSRSRSPS 1507



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 18/39 (46%), Positives = 24/39 (61%)

Query: 55   RSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPS 93
            RS+  SS  S   ++SS  SSS+++SSS  S S S S S
Sbjct: 1467 RSSCSSSGRSRRCSSSSSSSSSSSSSSSSSSSSRSRSRS 1505



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 18/38 (47%), Positives = 22/38 (57%)

Query: 66   TSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFS 103
            +S +SS  S   ++SSS  S S SSS S S S S S S
Sbjct: 1468 SSCSSSGRSRRCSSSSSSSSSSSSSSSSSSSSRSRSRS 1505



 Score = 27.3 bits (59), Expect = 2.6
 Identities = 21/58 (36%), Positives = 28/58 (48%)

Query: 44   SSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDS 101
            SS+ R   R +         SS S++      S+++SSS  S S SSS S S S S S
Sbjct: 1448 SSSSRSRSRSLSPPHKRWRRSSCSSSGRSRRCSSSSSSSSSSSSSSSSSSSSRSRSRS 1505



 Score = 27.3 bits (59), Expect = 2.6
 Identities = 19/37 (51%), Positives = 23/37 (62%)

Query: 65   STSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDS 101
            S+S  S   SSS+++SSS  S S SSS S S S S S
Sbjct: 1471 SSSGRSRRCSSSSSSSSSSSSSSSSSSSSRSRSRSPS 1507


>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
           sapiens]
          Length = 1059

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 16/35 (45%), Positives = 25/35 (71%)

Query: 60  SSITSSTSTASSDESSSAAASSSGRSPSPSSSPSF 94
           SS +SS+S++SS  SSS+++SS  + P P   P+F
Sbjct: 96  SSSSSSSSSSSSSSSSSSSSSSQAKKPDPPLPPAF 130



 Score = 29.3 bits (64), Expect = 0.70
 Identities = 14/30 (46%), Positives = 22/30 (73%)

Query: 63  TSSTSTASSDESSSAAASSSGRSPSPSSSP 92
           +SS+S++SS  SSS+++SSS  S S +  P
Sbjct: 93  SSSSSSSSSSSSSSSSSSSSSSSSSQAKKP 122



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 65  STSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDS 101
           ST    ++  SS+++SSS  S S SSS S S S+S +
Sbjct: 83  STFKPKAEVPSSSSSSSSSSSSSSSSSSSSSSSSSQA 119



 Score = 27.3 bits (59), Expect = 2.6
 Identities = 16/41 (39%), Positives = 20/41 (48%)

Query: 60  SSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASD 100
           S+        SS  SSS+++SSS  S S SSS S      D
Sbjct: 83  STFKPKAEVPSSSSSSSSSSSSSSSSSSSSSSSSSQAKKPD 123


>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
           sapiens]
          Length = 1059

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 16/35 (45%), Positives = 25/35 (71%)

Query: 60  SSITSSTSTASSDESSSAAASSSGRSPSPSSSPSF 94
           SS +SS+S++SS  SSS+++SS  + P P   P+F
Sbjct: 96  SSSSSSSSSSSSSSSSSSSSSSQAKKPDPPLPPAF 130



 Score = 29.3 bits (64), Expect = 0.70
 Identities = 14/30 (46%), Positives = 22/30 (73%)

Query: 63  TSSTSTASSDESSSAAASSSGRSPSPSSSP 92
           +SS+S++SS  SSS+++SSS  S S +  P
Sbjct: 93  SSSSSSSSSSSSSSSSSSSSSSSSSQAKKP 122



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 65  STSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDS 101
           ST    ++  SS+++SSS  S S SSS S S S+S +
Sbjct: 83  STFKPKAEVPSSSSSSSSSSSSSSSSSSSSSSSSSQA 119



 Score = 27.3 bits (59), Expect = 2.6
 Identities = 16/41 (39%), Positives = 20/41 (48%)

Query: 60  SSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASD 100
           S+        SS  SSS+++SSS  S S SSS S      D
Sbjct: 83  STFKPKAEVPSSSSSSSSSSSSSSSSSSSSSSSSSQAKKPD 123


>gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithorax
           homolog, Drosophila); translocated to, 1 [Homo sapiens]
          Length = 559

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 28  RTLVFSIFSLEK-AFLKSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSP 86
           RT   S FS +K A  KSSTR   ++     R++        ++S++ +S  + S+  SP
Sbjct: 317 RTSSSSSFSDKKPAKDKSSTRGEKVKAESEPREAKKALEVEESNSEDEASFKSESAQSSP 376

Query: 87  SPSSSPSFSGSASD 100
           S SSS S S S SD
Sbjct: 377 SNSSSSSDSSSDSD 390



 Score = 26.2 bits (56), Expect = 5.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 69  ASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSD 104
           +  D+SSS   ++   +P   S  SFS S SD+ +D
Sbjct: 414 SDEDDSSSGEEAAGKTNPGRDSRLSFSDSESDNSAD 449



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 56  SARDSSITSSTSTASSDESSSAAASSS--GRSPSPSSSPSFS 95
           S R ++  S   +A   + SS+  S S  G SP  SSS SFS
Sbjct: 284 SKRPATADSPKPSAKKQKKSSSKGSRSAPGTSPRTSSSSSFS 325


>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
          Length = 3664

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 29/70 (41%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 48  RRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLM 107
           RRP R  + +R  S  SS S   S +  ++ AS   RSPS S S S S S+SDS S    
Sbjct: 231 RRPERNYQHSRSRSPHSSQSRNQSPQRLASQASRPTRSPSGSGSRSRS-SSSDSISSSSS 289

Query: 108 LSLAGSFTSS 117
            S   S +SS
Sbjct: 290 TSSDSSDSSS 299



 Score = 30.4 bits (67), Expect = 0.31
 Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 2/41 (4%)

Query: 55  RSARDSSITSSTSTA--SSDESSSAAASSSGRSPSPSSSPS 93
           RS+   SI+SS+ST+  SSD SSS++  S  RS   ++ P+
Sbjct: 277 RSSSSDSISSSSSTSSDSSDSSSSSSDDSPARSVQSAAVPA 317



 Score = 28.9 bits (63), Expect = 0.91
 Identities = 21/66 (31%), Positives = 29/66 (43%)

Query: 38  EKAFLKSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGS 97
           E+ +  S +R       R+     + S  S  +   S S + S S  S S SSS S S  
Sbjct: 234 ERNYQHSRSRSPHSSQSRNQSPQRLASQASRPTRSPSGSGSRSRSSSSDSISSSSSTSSD 293

Query: 98  ASDSFS 103
           +SDS S
Sbjct: 294 SSDSSS 299



 Score = 28.9 bits (63), Expect = 0.91
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 45  STRRRPLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDS 101
           S  + P RL   A   + + S S + S  SSS + SSS  S S  SS S S S+ DS
Sbjct: 250 SRNQSPQRLASQASRPTRSPSGSGSRSRSSSSDSISSSS-STSSDSSDSSSSSSDDS 305



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 45  STRRRPLRLIRSARDSSITSSTS-TASSDESSSAAASSSGRSPSPSSSPSFSGSAS 99
           S +R   +  R  R  S + S S ++SSD  SS++++SS  S S SSS   S + S
Sbjct: 254 SPQRLASQASRPTRSPSGSGSRSRSSSSDSISSSSSTSSDSSDSSSSSSDDSPARS 309


>gi|4505379 nuclear factor erythroid 2-like 1 [Homo sapiens]
          Length = 772

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 59  DSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSD 104
           DS ++  +S + S  SSS  +SSS  S S SSS S S SAS SFS+
Sbjct: 476 DSGLSLDSSHSPSSLSSSEGSSSSSSSSSSSSS-SASSSASSSFSE 520



 Score = 32.0 bits (71), Expect = 0.11
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 5/51 (9%)

Query: 56  SARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFS-----GSASDS 101
           S   S   SS S++    SSS+++SSS  S S S+S SFS     G +SDS
Sbjct: 480 SLDSSHSPSSLSSSEGSSSSSSSSSSSSSSASSSASSSFSEEGAVGYSSDS 530



 Score = 30.4 bits (67), Expect = 0.31
 Identities = 19/41 (46%), Positives = 23/41 (56%)

Query: 63  TSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFS 103
           + S  +  S  S S+ +SS G S S SSS S S SAS S S
Sbjct: 475 SDSGLSLDSSHSPSSLSSSEGSSSSSSSSSSSSSSASSSAS 515



 Score = 26.2 bits (56), Expect = 5.9
 Identities = 19/46 (41%), Positives = 22/46 (47%)

Query: 72  DESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSLAGSFTSS 117
           +E  S +  S   S SPSS  S  GS+S S S     S A S  SS
Sbjct: 471 EEFDSDSGLSLDSSHSPSSLSSSEGSSSSSSSSSSSSSSASSSASS 516


>gi|55953110 retinoblastoma protein-binding zinc finger protein
           isoform c [Homo sapiens]
          Length = 1481

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 50  PLRLIRSARDSSITSSTSTASSDESSSAAASSSGRSPSPSSSPSFSGSASDSF-SDLLML 108
           PL    S    +++SS+S++SS  S S+++SSS  SP P S+ S   S+ D+  + L M+
Sbjct: 838 PLMSAASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLSAISSVVSSGDNLEASLPMI 897

Query: 109 S 109
           S
Sbjct: 898 S 898



 Score = 30.4 bits (67), Expect = 0.31
 Identities = 20/44 (45%), Positives = 26/44 (59%)

Query: 67  STASSDESSSAAASSSGRSPSPSSSPSFSGSASDSFSDLLMLSL 110
           S++SS  SSS++ SSS  S SPS  P  + S+  S  D L  SL
Sbjct: 851 SSSSSSSSSSSSFSSSSSSSSPSPPPLSAISSVVSSGDNLEASL 894



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 9/81 (11%)

Query: 42  LKSSTRRRPLRLIRSARDSSITSSTSTASSDESSSAAASS-----SGRSPSPSSSPSFSG 96
           L ++T + PL ++      +++ S S     E   +AAS      S  S S SSS SFS 
Sbjct: 810 LSNATAQSPLPIL----SPTVSPSPSPIPPVEPLMSAASPGPPTLSSSSSSSSSSSSFSS 865

Query: 97  SASDSFSDLLMLSLAGSFTSS 117
           S+S S      LS   S  SS
Sbjct: 866 SSSSSSPSPPPLSAISSVVSS 886


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.122    0.315 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,374,495
Number of Sequences: 37866
Number of extensions: 126078
Number of successful extensions: 5578
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 131
Number of HSP's that attempted gapping in prelim test: 2922
Number of HSP's gapped (non-prelim): 1912
length of query: 117
length of database: 18,247,518
effective HSP length: 87
effective length of query: 30
effective length of database: 14,953,176
effective search space: 448595280
effective search space used: 448595280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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