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Search of human proteins with 239751080
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751080 PREDICTED: hypothetical protein XP_002347700 [Homo
sapiens]
(330 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751080 PREDICTED: hypothetical protein XP_002347700 [Homo ... 691 0.0
gi|239745567 PREDICTED: hypothetical protein XP_002344149 [Homo ... 691 0.0
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 49 5e-06
gi|239754512 PREDICTED: hypothetical protein [Homo sapiens] 45 1e-04
gi|239749073 PREDICTED: hypothetical protein [Homo sapiens] 45 1e-04
gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo ... 45 1e-04
gi|239508751 PREDICTED: hypothetical protein [Homo sapiens] 45 1e-04
gi|68563515 keratinocyte proline-rich protein [Homo sapiens] 44 2e-04
gi|4503825 frizzled 1 [Homo sapiens] 43 3e-04
gi|5730045 solute carrier family 16, member 2 [Homo sapiens] 43 3e-04
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 43 3e-04
gi|58761548 tau tubulin kinase 1 [Homo sapiens] 41 0.002
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|62953127 polyhomeotic 1-like [Homo sapiens] 40 0.003
gi|72004269 tetra-peptide repeat homeobox [Homo sapiens] 40 0.003
gi|150378543 MYST histone acetyltransferase (monocytic leukemia)... 40 0.004
gi|150378463 MYST histone acetyltransferase (monocytic leukemia)... 40 0.004
gi|150378493 MYST histone acetyltransferase (monocytic leukemia)... 40 0.004
gi|209862845 nuclear factor of activated T-cells, cytoplasmic, c... 39 0.005
gi|239757128 PREDICTED: similar to mCG141871 [Homo sapiens] 39 0.005
gi|113428072 PREDICTED: similar to mCG141871 [Homo sapiens] 39 0.005
gi|114431236 zinc finger protein 462 [Homo sapiens] 39 0.006
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 39 0.006
gi|13376335 hypothetical protein LOC79946 [Homo sapiens] 39 0.008
gi|118402590 myosin XV [Homo sapiens] 38 0.011
gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sap... 38 0.011
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 38 0.014
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 38 0.014
gi|14249464 zinc finger and BTB domain containing 45 [Homo sapiens] 38 0.014
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 38 0.014
>gi|239751080 PREDICTED: hypothetical protein XP_002347700 [Homo
sapiens]
Length = 330
Score = 691 bits (1784), Expect = 0.0
Identities = 330/330 (100%), Positives = 330/330 (100%)
Query: 1 MASHLDYMTSKLHRLSSGGFSPRGGRGTGGLGIAASHLTGGRIAAYSSPGLVAEEGTHSI 60
MASHLDYMTSKLHRLSSGGFSPRGGRGTGGLGIAASHLTGGRIAAYSSPGLVAEEGTHSI
Sbjct: 1 MASHLDYMTSKLHRLSSGGFSPRGGRGTGGLGIAASHLTGGRIAAYSSPGLVAEEGTHSI 60
Query: 61 GDHHQTRKELKERESHSGPVIATSSTPTQTHHQWPGNHVQLHVQLKQVEVEEDDCHQPEE 120
GDHHQTRKELKERESHSGPVIATSSTPTQTHHQWPGNHVQLHVQLKQVEVEEDDCHQPEE
Sbjct: 61 GDHHQTRKELKERESHSGPVIATSSTPTQTHHQWPGNHVQLHVQLKQVEVEEDDCHQPEE 120
Query: 121 DSDEHHPAIGRIQVVRGVRNQRPHQQPQHLGGCSSMSAPRRERTKPRSGRSADTEASAPC 180
DSDEHHPAIGRIQVVRGVRNQRPHQQPQHLGGCSSMSAPRRERTKPRSGRSADTEASAPC
Sbjct: 121 DSDEHHPAIGRIQVVRGVRNQRPHQQPQHLGGCSSMSAPRRERTKPRSGRSADTEASAPC 180
Query: 181 AGLLVRVLTFDGNSAMAAPLASRGRYGRRRRPSSGGCRLPRRFSPRLRIPVWLQALQEAS 240
AGLLVRVLTFDGNSAMAAPLASRGRYGRRRRPSSGGCRLPRRFSPRLRIPVWLQALQEAS
Sbjct: 181 AGLLVRVLTFDGNSAMAAPLASRGRYGRRRRPSSGGCRLPRRFSPRLRIPVWLQALQEAS 240
Query: 241 GLGAWGARCGRDPGSAPAAGAAPLTLCSPPPPQPRPVRGQPRPLPGPVNNPGSVNRLRQH 300
GLGAWGARCGRDPGSAPAAGAAPLTLCSPPPPQPRPVRGQPRPLPGPVNNPGSVNRLRQH
Sbjct: 241 GLGAWGARCGRDPGSAPAAGAAPLTLCSPPPPQPRPVRGQPRPLPGPVNNPGSVNRLRQH 300
Query: 301 QPRPLRRPPPGQAARWEFPGSRPGRGSFRA 330
QPRPLRRPPPGQAARWEFPGSRPGRGSFRA
Sbjct: 301 QPRPLRRPPPGQAARWEFPGSRPGRGSFRA 330
>gi|239745567 PREDICTED: hypothetical protein XP_002344149 [Homo
sapiens]
Length = 330
Score = 691 bits (1784), Expect = 0.0
Identities = 330/330 (100%), Positives = 330/330 (100%)
Query: 1 MASHLDYMTSKLHRLSSGGFSPRGGRGTGGLGIAASHLTGGRIAAYSSPGLVAEEGTHSI 60
MASHLDYMTSKLHRLSSGGFSPRGGRGTGGLGIAASHLTGGRIAAYSSPGLVAEEGTHSI
Sbjct: 1 MASHLDYMTSKLHRLSSGGFSPRGGRGTGGLGIAASHLTGGRIAAYSSPGLVAEEGTHSI 60
Query: 61 GDHHQTRKELKERESHSGPVIATSSTPTQTHHQWPGNHVQLHVQLKQVEVEEDDCHQPEE 120
GDHHQTRKELKERESHSGPVIATSSTPTQTHHQWPGNHVQLHVQLKQVEVEEDDCHQPEE
Sbjct: 61 GDHHQTRKELKERESHSGPVIATSSTPTQTHHQWPGNHVQLHVQLKQVEVEEDDCHQPEE 120
Query: 121 DSDEHHPAIGRIQVVRGVRNQRPHQQPQHLGGCSSMSAPRRERTKPRSGRSADTEASAPC 180
DSDEHHPAIGRIQVVRGVRNQRPHQQPQHLGGCSSMSAPRRERTKPRSGRSADTEASAPC
Sbjct: 121 DSDEHHPAIGRIQVVRGVRNQRPHQQPQHLGGCSSMSAPRRERTKPRSGRSADTEASAPC 180
Query: 181 AGLLVRVLTFDGNSAMAAPLASRGRYGRRRRPSSGGCRLPRRFSPRLRIPVWLQALQEAS 240
AGLLVRVLTFDGNSAMAAPLASRGRYGRRRRPSSGGCRLPRRFSPRLRIPVWLQALQEAS
Sbjct: 181 AGLLVRVLTFDGNSAMAAPLASRGRYGRRRRPSSGGCRLPRRFSPRLRIPVWLQALQEAS 240
Query: 241 GLGAWGARCGRDPGSAPAAGAAPLTLCSPPPPQPRPVRGQPRPLPGPVNNPGSVNRLRQH 300
GLGAWGARCGRDPGSAPAAGAAPLTLCSPPPPQPRPVRGQPRPLPGPVNNPGSVNRLRQH
Sbjct: 241 GLGAWGARCGRDPGSAPAAGAAPLTLCSPPPPQPRPVRGQPRPLPGPVNNPGSVNRLRQH 300
Query: 301 QPRPLRRPPPGQAARWEFPGSRPGRGSFRA 330
QPRPLRRPPPGQAARWEFPGSRPGRGSFRA
Sbjct: 301 QPRPLRRPPPGQAARWEFPGSRPGRGSFRA 330
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 49.3 bits (116), Expect = 5e-06
Identities = 27/64 (42%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 246 GARCGRDPGSAPAAGAAPLTLCSPPPPQPRPVRGQPRPLPGPVNNPGSVNRLRQHQPRPL 305
G R G PG+ PA G PPPP P P + QP P P P PG QH PR
Sbjct: 7 GGRPGESPGATPAPGP-------PPPPPPAPPQQQPPPPPPPAPPPGPGPAPPQHPPRAE 59
Query: 306 RRPP 309
PP
Sbjct: 60 ALPP 63
Score = 31.6 bits (70), Expect = 1.0
Identities = 24/71 (33%), Positives = 25/71 (35%), Gaps = 25/71 (35%)
Query: 269 PPPPQPRPVRGQ----------------PRPLPGPVNNPGSVNRLRQHQPRPLRRPPPGQ 312
PPPP P V RPL GP L PR +RRPPPG
Sbjct: 715 PPPPPPPQVTSAIATLQQAAAMSFCPQVARPLVGP---------LALGSPRLVRRPPPGP 765
Query: 313 AARWEFPGSRP 323
A PG P
Sbjct: 766 APAAASPGPPP 776
>gi|239754512 PREDICTED: hypothetical protein [Homo sapiens]
Length = 556
Score = 44.7 bits (104), Expect = 1e-04
Identities = 48/189 (25%), Positives = 64/189 (33%), Gaps = 31/189 (16%)
Query: 137 GVRNQRPHQQPQHLGGCSSMSAPRRERTKPRSGRSADTEASAPC-AGLLVRVLTFDGNSA 195
G R +R + +P P+R R +P G C +G + L
Sbjct: 333 GPRERRVYPRPPSKSQIQRRIRPKRSRRRPYQGTPGRDRPLRDCYSGPRLGYLRGPETRR 392
Query: 196 MAAPLASRGRYGRRRRPSSGGCRLPRRFSPRLRIPVWLQALQEASGLGAWGARCGRDPGS 255
+ +G+ GR + P + PRL W ++A PG
Sbjct: 393 RGGGVWWKGKAGRLAKRCGERHEAPEQGKPRLPPQAWHDQGRDAP------------PGP 440
Query: 256 APAAGAAPLTLCSPPPPQPRPVRGQP--RPLPGPVNNPGSVNRLRQHQPRPLRRPPPGQA 313
PA P PPPP P P R +P R PGP QP RPP Q+
Sbjct: 441 TPARRGLPRPPPPPPPPLPPPPRREPCHRAWPGPA------------QPLGNLRPPVQQS 488
Query: 314 ARWEFPGSR 322
A PG R
Sbjct: 489 A----PGGR 493
>gi|239749073 PREDICTED: hypothetical protein [Homo sapiens]
Length = 884
Score = 44.7 bits (104), Expect = 1e-04
Identities = 48/189 (25%), Positives = 64/189 (33%), Gaps = 31/189 (16%)
Query: 137 GVRNQRPHQQPQHLGGCSSMSAPRRERTKPRSGRSADTEASAPC-AGLLVRVLTFDGNSA 195
G R +R + +P P+R R +P G C +G + L
Sbjct: 661 GPRERRVYPRPPSKSQIQRRIRPKRSRRRPYQGTPGRDRPLRDCYSGPRLGYLRGPETRR 720
Query: 196 MAAPLASRGRYGRRRRPSSGGCRLPRRFSPRLRIPVWLQALQEASGLGAWGARCGRDPGS 255
+ +G+ GR + P + PRL W ++A PG
Sbjct: 721 RGGGVWWKGKAGRLAKRCGERHEAPEQGKPRLPPQAWHDQGRDAP------------PGP 768
Query: 256 APAAGAAPLTLCSPPPPQPRPVRGQP--RPLPGPVNNPGSVNRLRQHQPRPLRRPPPGQA 313
PA P PPPP P P R +P R PGP QP RPP Q+
Sbjct: 769 TPARRGLPRPPPPPPPPLPPPPRREPCHRAWPGPA------------QPLGNLRPPVQQS 816
Query: 314 ARWEFPGSR 322
A PG R
Sbjct: 817 A----PGGR 821
>gi|239743099 PREDICTED: hypothetical protein XP_002342754 [Homo
sapiens]
Length = 884
Score = 44.7 bits (104), Expect = 1e-04
Identities = 48/189 (25%), Positives = 64/189 (33%), Gaps = 31/189 (16%)
Query: 137 GVRNQRPHQQPQHLGGCSSMSAPRRERTKPRSGRSADTEASAPC-AGLLVRVLTFDGNSA 195
G R +R + +P P+R R +P G C +G + L
Sbjct: 661 GPRERRVYPRPPSKSQIQRRIRPKRSRRRPYQGTPGRDRPLRDCYSGPRLGYLRGPETRR 720
Query: 196 MAAPLASRGRYGRRRRPSSGGCRLPRRFSPRLRIPVWLQALQEASGLGAWGARCGRDPGS 255
+ +G+ GR + P + PRL W ++A PG
Sbjct: 721 RGGGVWWKGKAGRLAKRCGERHEAPEQGKPRLPPQAWHDQGRDAP------------PGP 768
Query: 256 APAAGAAPLTLCSPPPPQPRPVRGQP--RPLPGPVNNPGSVNRLRQHQPRPLRRPPPGQA 313
PA P PPPP P P R +P R PGP QP RPP Q+
Sbjct: 769 TPARRGLPRPPPPPPPPLPPPPRREPCHRAWPGPA------------QPLGNLRPPVQQS 816
Query: 314 ARWEFPGSR 322
A PG R
Sbjct: 817 A----PGGR 821
>gi|239508751 PREDICTED: hypothetical protein [Homo sapiens]
Length = 884
Score = 44.7 bits (104), Expect = 1e-04
Identities = 48/189 (25%), Positives = 64/189 (33%), Gaps = 31/189 (16%)
Query: 137 GVRNQRPHQQPQHLGGCSSMSAPRRERTKPRSGRSADTEASAPC-AGLLVRVLTFDGNSA 195
G R +R + +P P+R R +P G C +G + L
Sbjct: 661 GPRERRVYPRPPSKSQIQRRIRPKRSRRRPYQGTPGRDRPLRDCYSGPRLGYLRGPETRR 720
Query: 196 MAAPLASRGRYGRRRRPSSGGCRLPRRFSPRLRIPVWLQALQEASGLGAWGARCGRDPGS 255
+ +G+ GR + P + PRL W ++A PG
Sbjct: 721 RGGGVWWKGKAGRLAKRCGERHEAPEQGKPRLPPQAWHDQGRDAP------------PGP 768
Query: 256 APAAGAAPLTLCSPPPPQPRPVRGQP--RPLPGPVNNPGSVNRLRQHQPRPLRRPPPGQA 313
PA P PPPP P P R +P R PGP QP RPP Q+
Sbjct: 769 TPARRGLPRPPPPPPPPLPPPPRREPCHRAWPGPA------------QPLGNLRPPVQQS 816
Query: 314 ARWEFPGSR 322
A PG R
Sbjct: 817 A----PGGR 821
>gi|68563515 keratinocyte proline-rich protein [Homo sapiens]
Length = 579
Score = 44.3 bits (103), Expect = 2e-04
Identities = 59/210 (28%), Positives = 80/210 (38%), Gaps = 51/210 (24%)
Query: 159 PRRERTKPRSGRSADTEASAPCAGLLVRVLTFDG-NSAMAAPLASRGRYGRR--RRPSSG 215
PRR + PRS + PC+ + + +G + P S Y R RRP S
Sbjct: 259 PRRLQLFPRS--CSPPRRFEPCSSSYLPLRPSEGFPNYCTPPRRSEPIYNSRCPRRPISS 316
Query: 216 -------GCRL-------PRRFSPR---LRIPVWLQALQEASGLGAWGARCGR-----DP 253
CR+ PR+ P+ + IP + Q +WGA C +P
Sbjct: 317 CSQRRGPKCRIEISSPCCPRQVPPQRCPVEIPPIRRRSQSCGPQPSWGASCPELRPHVEP 376
Query: 254 GSAPA---------AGAAPLTLCSPPPPQPR-------PVRGQPRPLP----GPVNNPGS 293
P+ +PL C PP P+PR + +PRPLP P P
Sbjct: 377 RPLPSFCPPRRLDQCPESPLQRCPPPAPRPRLRPEPCISLEPRPRPLPRQLSEPCLYPEP 436
Query: 294 VNRLRQHQPRPLRRPPPGQAARWEFPGSRP 323
+ LR PRP+ P PGQ E P RP
Sbjct: 437 LPALRP-TPRPVPLPRPGQC---EIPEPRP 462
>gi|4503825 frizzled 1 [Homo sapiens]
Length = 647
Score = 43.1 bits (100), Expect = 3e-04
Identities = 38/113 (33%), Positives = 48/113 (42%), Gaps = 22/113 (19%)
Query: 162 ERTKPRSGRSADTEASAP-CAGLLVRVLTFDGNSAMAAPLASRGRYGRRRRPSSGGCRLP 220
E P+ R+A AS CAG L L +G+ G G RRRP P
Sbjct: 3 EEEAPKKSRAAGGGASWELCAGALSARLAEEGS----------GDAGGRRRPPVD----P 48
Query: 221 RRFSPRLRIPVWLQALQEASGLGAWGARCGRDPGSAPAAGAAPLTLCSPPPPQ 273
RR + +L + +WL L+ LG G+ PG P G P PPPPQ
Sbjct: 49 RRLARQLLLLLWL--LEAPLLLGVRAQAAGQGPGQGPGPGQQP-----PPPPQ 94
>gi|5730045 solute carrier family 16, member 2 [Homo sapiens]
Length = 613
Score = 43.1 bits (100), Expect = 3e-04
Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 13/141 (9%)
Query: 194 SAMAAPLASRGRYGRRRRPSSGGCRLPRRFSPRLRIPVWLQALQEASGLGAWGARCGRDP 253
S ++P +S R + G P SP + + QA +EA G + ++P
Sbjct: 40 SGSSSPPSSSSCSSRNKYQPQSGSSGPSSHSPPAAMALQSQASEEAKGPWQEADQEQQEP 99
Query: 254 GSAPAAGAAPLTLCSP-----PPPQPRPVRGQPRPLPGPVNNPG-SVNRLRQHQPRPLRR 307
+P + P P PPP+P+P +P+PLP P P R H+P
Sbjct: 100 VGSPEPESEPEPEPEPEPVPVPPPEPQP---EPQPLPDPAPLPELEFESERVHEP----E 152
Query: 308 PPPGQAARWEFPGSRPGRGSF 328
P P R G +P G F
Sbjct: 153 PTPTVETRGTARGFQPPEGGF 173
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 43.1 bits (100), Expect = 3e-04
Identities = 32/76 (42%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 253 PGSAPAAGAAPLTLCSPPPP--QPRPVRGQPRPLPGPVNNPGSVNRLRQHQ-----PRPL 305
PG A A G AP + P PP Q P PR PGP PGSV+ LR P P
Sbjct: 1241 PGPAGATGRAPKDIPDPGPPGDQGPPGPDGPRGAPGPPGLPGSVDLLRGEPGDCGLPGPP 1300
Query: 306 RRP-PPGQAARWEFPG 320
P PPG FPG
Sbjct: 1301 GPPGPPGPPGYKGFPG 1316
>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
Length = 1321
Score = 40.8 bits (94), Expect = 0.002
Identities = 82/329 (24%), Positives = 111/329 (33%), Gaps = 72/329 (21%)
Query: 12 LHRLSSGGFSPRGGRGTGGLGIAASHLTGGRIAAYSSPGLVAEEGTHSIGDHHQTRKELK 71
L S GG G R G+A S L G I EG+ G +T E+
Sbjct: 962 LELASDGGAVEEGARAPLENGLALSGLNGAEI-----------EGSALSGAPRETPSEMA 1010
Query: 72 ERESHSGPVIATSSTP--------------TQTHHQWPGNHVQLHVQLKQVEVEEDDCHQ 117
+GP +A P + H PG+ + + + + EED +
Sbjct: 1011 TNSLPNGPALADGPAPVSPLEPSPEKVATISPRRHAMPGSRPRSRIPV--LLSEEDTGSE 1068
Query: 118 PEE--DSDEHHPAIGRIQ--VVRGVRNQRPHQQPQHLGGCSSMSAPRRER----TKPRSG 169
P + E R Q + R V +R + L +S S+ +R T +G
Sbjct: 1069 PSGSLSAKERWSKRARPQQDLARLVMEKRQGRLLLRLASGASSSSSEEQRRASETLSGTG 1128
Query: 170 RSADTEASAPCAGLLVRVLTFDGNSAMAAPLASRGRYGRRRRPSSGGCRLPRRFSPRLRI 229
DT AS P A L S AA S R+PR LR+
Sbjct: 1129 SEEDTPASEPAAAL-------PRKSGRAAATRS---------------RIPRPIG--LRM 1164
Query: 230 PVWLQALQEASGLGAWGARCGRDPGSAPAAGAAPLT--LCSPPPPQPRPVRGQPRPLPGP 287
P+ + A Q AS R G+APA A + PP +P+ PG
Sbjct: 1165 PMPVAAQQPAS----------RSHGAAPALDTAITSRLQLQTPPGSATAADLRPKQPPGR 1214
Query: 288 VNNPGSVNR-LRQHQPRPLRRPPPGQAAR 315
PG R PR R P AAR
Sbjct: 1215 GLGPGRAQAGARPPAPRSPRLPASTSAAR 1243
>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 40.4 bits (93), Expect = 0.002
Identities = 64/227 (28%), Positives = 83/227 (36%), Gaps = 40/227 (17%)
Query: 127 PAIGRIQVVRGVRNQRPHQQPQHLGGCSSMSAPRRERTKPRSGRSA------DTEASAP- 179
PA R+ G R + +S S P P S R+A A+AP
Sbjct: 20 PARPRVNEQWGSRAHPNPRSASSAAAAASSSFPPPGFIHPPSSRAAVHSRLRAAPAAAPR 79
Query: 180 -----CAGLLVRVLTFDGNSAMAAPLASRGRY-----GRR--RRPSSGGCRLPRRFSPRL 227
AG R G+ AA A+ + GRR RRP PR P
Sbjct: 80 LLPRVLAGAPARTGALAGSRLRAAAAAAHDQEAAAPTGRRWRRRPGPSPPLQPRSRHPHT 139
Query: 228 RIPVWLQALQEASGLGAWGARCGRDPGSAPAAGAAPLTLCSPPPPQPR------PVRGQP 281
R P +A+ EA+ L PG+ P A + P SP P + R P RG P
Sbjct: 140 RYP---RAVPEATPLRP-------PPGTRPRAKSRPGCRSSPFPARSRTPGEAGPPRGDP 189
Query: 282 RP-LPGPVNNPGSVNRLRQ----HQPRPLRRPPPGQAARWEFPGSRP 323
RP P P ++P LR+ P P RR A + P +P
Sbjct: 190 RPRAPRPGDHPRRSPALRETPSLSPPSPGRRNGKRAAGKGTTPQPQP 236
>gi|62953127 polyhomeotic 1-like [Homo sapiens]
Length = 1004
Score = 40.0 bits (92), Expect = 0.003
Identities = 70/313 (22%), Positives = 106/313 (33%), Gaps = 48/313 (15%)
Query: 24 GGRGTGGLGIAASHLTGGRIAAYSSPGLV-----AEEGTHSIGDHHQTRKELKERESHSG 78
GG+ GGLG S GG G+V A+ T S G + ++ G
Sbjct: 284 GGQAHGGLGQLPSSGMGGGSCPRKGTGVVQPLPAAQTVTVSQGSQTEAESAAAKKAEADG 343
Query: 79 -------------------PVIATSSTPTQTH-HQWPGNHVQLHVQLKQVEVEEDDC--H 116
+ +S+T TQ H Q+H+Q KQV +++ H
Sbjct: 344 SGQQNVGMNLTRTATPAPSQTLISSATYTQIQPHSLIQQQQQIHLQQKQVVIQQQIAIHH 403
Query: 117 QPE---EDSDEHHPAIGRIQVVRGVRNQRPHQQPQHLGGCSSMSAPRRERTKP------- 166
Q + S H A +Q+ + + Q+ QQ Q ++++AP+ + P
Sbjct: 404 QQQFQHRQSQLLHTAT-HLQLAQQQQQQQQQQQQQQQPQATTLTAPQPPQVPPTQQVPPS 462
Query: 167 RSGRSADTEASAPCAGLLVRVLTFDGNSAMAAPLASRGRYGRRRRPSSGGCRLPRRFSPR 226
+S + A T P L D P+ S+ + P G ++ P
Sbjct: 463 QSQQQAQTLVVQPMLQSSPLSLPPDAAPKPPIPIQSKPPVAPIKPPQLGAAKMSAAQQPP 522
Query: 227 LRIPVWL-------QALQEASGLGAWGARCGRDPGSAPAAGAAPLTLCSPPPPQPRPVRG 279
IPV + A +A GL A G + L S PP P
Sbjct: 523 PHIPVQVVGTRQPGTAQAQALGLAQLAAAVPTSRGMPGTVQSGQAHLASSPPSSQAPGAL 582
Query: 280 QPRPLPGPVNNPG 292
Q P P PG
Sbjct: 583 QECP---PTLAPG 592
>gi|72004269 tetra-peptide repeat homeobox [Homo sapiens]
Length = 411
Score = 40.0 bits (92), Expect = 0.003
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 18/87 (20%)
Query: 253 PGSAPAAGAAPLTLCSPPP-PQPRPVRGQ-----PRPLPGPVNNPGSVNRLRQHQPRPLR 306
P P G P + P P P P P+ G P P+PGP++ PG + P P +
Sbjct: 218 PNPGPIPGPIPGPISGPNPGPIPGPISGPNPGLIPGPIPGPISGPGPI---IGPIPSPAQ 274
Query: 307 RPPPGQ---------AARWEFPGSRPG 324
P PG+ R PGS PG
Sbjct: 275 IPGPGRLQGPGPILSPGRMRSPGSLPG 301
Score = 35.0 bits (79), Expect = 0.092
Identities = 48/194 (24%), Positives = 64/194 (32%), Gaps = 51/194 (26%)
Query: 139 RNQRPHQQPQHLGGCSSMSA------PRRERTKPRSGRSADTEASAPCAGLLVRVLTFDG 192
R +R QQPQ + G A P + P+ G S A+ P L
Sbjct: 22 RERRLQQQPQRVPGQRGRGARAAPLVPAASASAPQRGPSGILPAAEPTICSL-------- 73
Query: 193 NSAMAAPLASRGRYGRRRRPSSGGCRLPRRFSPRLRIPVWLQALQEASGLGAWGARCGRD 252
+ A P R + G S G +P +IP G G
Sbjct: 74 HQAWGGP-GCRAQKGIPAALSPGPGPIPAPIPGPAQIP---------------GPLPGSI 117
Query: 253 PGSAPAAGAAPLTLCSPPP---------------PQPRPVRGQPRPLPGPVNNPGSVNRL 297
PG P P + +P P P P P+ G P P+PGP++ P S
Sbjct: 118 PGPIPGPAQIPSPIPAPIPGPISGPVQIPGPFRGPIPGPISG-PAPIPGPISGPFS---- 172
Query: 298 RQHQPRPLRRPPPG 311
P P+ P PG
Sbjct: 173 -GPNPGPIPGPNPG 185
Score = 33.9 bits (76), Expect = 0.21
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 16/82 (19%)
Query: 253 PGSAPAAGAAPLTLCSPPP-PQPRPVRGQ---------PRPLPGPVNNPGSVNRLRQHQP 302
P S P +G P + P P P P P+ G P P+PGP++ P + P
Sbjct: 166 PISGPFSGPNPGPIPGPNPGPIPGPISGPIPGPISVPIPGPIPGPISGP-----ISGPNP 220
Query: 303 RPLRRPPPGQAARWEFPGSRPG 324
P+ P PG + PG PG
Sbjct: 221 GPIPGPIPGPIS-GPNPGPIPG 241
Score = 33.1 bits (74), Expect = 0.35
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 13/65 (20%)
Query: 251 RDPGSAPAAGAAPLTLCSPPP---PQPRPVRG-QPRPLPGPVNNPGSVNRLRQHQPRPLR 306
R P P +G AP+ P P P P+ G P P+PGP++ P P P+
Sbjct: 150 RGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGP---------IPGPIS 200
Query: 307 RPPPG 311
P PG
Sbjct: 201 VPIPG 205
>gi|150378543 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 39.7 bits (91), Expect = 0.004
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 269 PPPPQPRPVRGQPRPLPGPVNNPGSVNRLRQHQPRPLRRPPP 310
PPP QP+P QP+P P P P +Q QP+P + PPP
Sbjct: 1654 PPPQQPQPPPPQPQPAPQPP--PPQQQPQQQPQPQPQQPPPP 1693
Score = 29.3 bits (64), Expect = 5.1
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 18/55 (32%)
Query: 269 PPPPQPRPVRGQPRPLPGPVNNPGSVNRLRQHQPRPLRRPPPGQAARWEFPGSRP 323
PPPP P+ QP+P P QP+P +PPP Q + P +P
Sbjct: 1651 PPPPPPQ----QPQPPPP--------------QPQPAPQPPPPQQQPQQQPQPQP 1687
>gi|150378463 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 39.7 bits (91), Expect = 0.004
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 269 PPPPQPRPVRGQPRPLPGPVNNPGSVNRLRQHQPRPLRRPPP 310
PPP QP+P QP+P P P P +Q QP+P + PPP
Sbjct: 1654 PPPQQPQPPPPQPQPAPQPP--PPQQQPQQQPQPQPQQPPPP 1693
Score = 29.3 bits (64), Expect = 5.1
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 18/55 (32%)
Query: 269 PPPPQPRPVRGQPRPLPGPVNNPGSVNRLRQHQPRPLRRPPPGQAARWEFPGSRP 323
PPPP P+ QP+P P QP+P +PPP Q + P +P
Sbjct: 1651 PPPPPPQ----QPQPPPP--------------QPQPAPQPPPPQQQPQQQPQPQP 1687
>gi|150378493 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 39.7 bits (91), Expect = 0.004
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 269 PPPPQPRPVRGQPRPLPGPVNNPGSVNRLRQHQPRPLRRPPP 310
PPP QP+P QP+P P P P +Q QP+P + PPP
Sbjct: 1654 PPPQQPQPPPPQPQPAPQPP--PPQQQPQQQPQPQPQQPPPP 1693
Score = 29.3 bits (64), Expect = 5.1
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 18/55 (32%)
Query: 269 PPPPQPRPVRGQPRPLPGPVNNPGSVNRLRQHQPRPLRRPPPGQAARWEFPGSRP 323
PPPP P+ QP+P P QP+P +PPP Q + P +P
Sbjct: 1651 PPPPPPQ----QPQPPPP--------------QPQPAPQPPPPQQQPQQQPQPQP 1687
>gi|209862845 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 1 [Homo sapiens]
Length = 964
Score = 39.3 bits (90), Expect = 0.005
Identities = 33/109 (30%), Positives = 41/109 (37%), Gaps = 13/109 (11%)
Query: 190 FDGNSAMAAPLASRGRYGRRRRPSSGGCRLPRRFSPRLRIPVWLQALQEASGLGAWGAR- 248
F GNS+ P +S GR +G L + +EA LGA G
Sbjct: 39 FPGNSSPGLPSSSSP--GRDLGAPAGSMGAASCEDEELEFKLVFGEEKEAPPLGAGGLGE 96
Query: 249 ----------CGRDPGSAPAAGAAPLTLCSPPPPQPRPVRGQPRPLPGP 287
C G P GAAP+ + PPPP+P PRP P P
Sbjct: 97 ELDSEDAPPCCRLALGEPPPYGAAPIGIPRPPPPRPGMHSPPPRPAPSP 145
>gi|239757128 PREDICTED: similar to mCG141871 [Homo sapiens]
Length = 306
Score = 39.3 bits (90), Expect = 0.005
Identities = 46/129 (35%), Positives = 52/129 (40%), Gaps = 27/129 (20%)
Query: 212 PSSGGCRLPRRFSPRLRIPVWLQALQEASGLGAWGARCGRDPGSAPAAGAAPLTLCSPPP 271
P S G P RFS RLR PV+ ++Q L +RC R G A APLT PP
Sbjct: 143 PPSPGAARPARFSFRLR-PVFNASVQ---FLHCQLSRCRRLRGVRRA--PAPLT----PP 192
Query: 272 PQPRPVRGQPRPLPGPVNNPGSVNRLRQH--------------QPRPLRRPP---PGQAA 314
P P P R P+ GS L PRP RPP PG+A
Sbjct: 193 PPPPPSRCLPQDEACADTGSGSAEGLAADGPHLHTLTQPIVVTVPRPPPRPPKSVPGRAV 252
Query: 315 RWEFPGSRP 323
R E P P
Sbjct: 253 RPEPPAPAP 261
Score = 33.9 bits (76), Expect = 0.21
Identities = 40/127 (31%), Positives = 48/127 (37%), Gaps = 33/127 (25%)
Query: 220 PRRFSPRLRIP----VWLQALQEASGLGAWGA---RCGRDPGSAPAAGAA---------- 262
PRR P L +P V++QA A WG RC P S PA G A
Sbjct: 75 PRRAGP-LEVPADSRVFVQAAL-ARPSPRWGLALHRCSVTPSSRPAPGPALALLREGCPA 132
Query: 263 PLTLCSPPPPQPRPVRGQPRPLP---GPVNNP---------GSVNRLR--QHQPRPLRRP 308
++ PPPP P P +P PV N RLR + P PL P
Sbjct: 133 DTSVAFPPPPPPSPGAARPARFSFRLRPVFNASVQFLHCQLSRCRRLRGVRRAPAPLTPP 192
Query: 309 PPGQAAR 315
PP +R
Sbjct: 193 PPPPPSR 199
>gi|113428072 PREDICTED: similar to mCG141871 [Homo sapiens]
Length = 358
Score = 39.3 bits (90), Expect = 0.005
Identities = 46/129 (35%), Positives = 52/129 (40%), Gaps = 27/129 (20%)
Query: 212 PSSGGCRLPRRFSPRLRIPVWLQALQEASGLGAWGARCGRDPGSAPAAGAAPLTLCSPPP 271
P S G P RFS RLR PV+ ++Q L +RC R G A APLT PP
Sbjct: 195 PPSPGAARPARFSFRLR-PVFNASVQ---FLHCQLSRCRRLRGVRRA--PAPLT----PP 244
Query: 272 PQPRPVRGQPRPLPGPVNNPGSVNRLRQH--------------QPRPLRRPP---PGQAA 314
P P P R P+ GS L PRP RPP PG+A
Sbjct: 245 PPPPPSRCLPQDEACADTGSGSAEGLAADGPHLHTLTQPIVVTVPRPPPRPPKSVPGRAV 304
Query: 315 RWEFPGSRP 323
R E P P
Sbjct: 305 RPEPPAPAP 313
Score = 33.9 bits (76), Expect = 0.21
Identities = 40/127 (31%), Positives = 48/127 (37%), Gaps = 33/127 (25%)
Query: 220 PRRFSPRLRIP----VWLQALQEASGLGAWGA---RCGRDPGSAPAAGAA---------- 262
PRR P L +P V++QA A WG RC P S PA G A
Sbjct: 127 PRRAGP-LEVPADSRVFVQAAL-ARPSPRWGLALHRCSVTPSSRPAPGPALALLREGCPA 184
Query: 263 PLTLCSPPPPQPRPVRGQPRPLP---GPVNNP---------GSVNRLR--QHQPRPLRRP 308
++ PPPP P P +P PV N RLR + P PL P
Sbjct: 185 DTSVAFPPPPPPSPGAARPARFSFRLRPVFNASVQFLHCQLSRCRRLRGVRRAPAPLTPP 244
Query: 309 PPGQAAR 315
PP +R
Sbjct: 245 PPPPPSR 251
>gi|114431236 zinc finger protein 462 [Homo sapiens]
Length = 2506
Score = 38.9 bits (89), Expect = 0.006
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 269 PPPPQPRPVRGQPRPLPGPVNNPGSVNRLRQHQPRPLRRPPPGQ 312
PPPP P P QP+PL P P + Q P+P +PPP Q
Sbjct: 545 PPPPPPPPPPSQPQPLQQP--QPPQLQPPHQVPPQPQTQPPPTQ 586
Score = 34.3 bits (77), Expect = 0.16
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 269 PPPPQPRPVRGQPRPLPGPVNNPGSVNRLRQHQPRPLRRP-PPGQAA 314
PPPP P + +P P + P V Q QP P ++P PP QAA
Sbjct: 549 PPPPPPSQPQPLQQPQPPQLQPPHQVPPQPQTQPPPTQQPQPPTQAA 595
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 38.9 bits (89), Expect = 0.006
Identities = 43/140 (30%), Positives = 49/140 (35%), Gaps = 27/140 (19%)
Query: 192 GNSAMAAPLASRGRYGRRRRPSS-------GGCRLPRRFSPRLRIPVWLQALQEASGL-G 243
G + P S+G GR P G LP P LR L L G G
Sbjct: 1152 GFPGLTGPPGSQGELGRIGLPGGKGDDGWPGAPGLPG--FPGLRGIRGLHGLPGTKGFPG 1209
Query: 244 AWGARCGRDPGSAPAAGAAPLTLCSPPPPQPRPVRGQPRPLPGPVNNPGSVNRLRQHQPR 303
+ G+ DPG P PP R G+ LPGPV PG + Q
Sbjct: 1210 SPGSDIHGDPGF-------------PGPPGERGDPGEANTLPGPVGVPGQ----KGDQGA 1252
Query: 304 PLRRPPPGQAARWEFPGSRP 323
P R PPG FPG P
Sbjct: 1253 PGERGPPGSPGLQGFPGITP 1272
>gi|13376335 hypothetical protein LOC79946 [Homo sapiens]
Length = 257
Score = 38.5 bits (88), Expect = 0.008
Identities = 45/148 (30%), Positives = 56/148 (37%), Gaps = 38/148 (25%)
Query: 191 DGNSAMAAPLASRGRYGRR-------RRPSSGGCRLPRRFSPRLRIPVW--------LQA 235
D + + AP + R G R RRP+ R R SP P W +
Sbjct: 27 DKSGSAGAPSKNSSRLGGRPCMCTAGRRPNRASGRRRRSCSPA---PTWPPLCCYPQSRP 83
Query: 236 LQEASGLGAWGARCGRDPGSAPAAGAAPLTLCSPPPPQPRP-------VRGQPRPLPGPV 288
A+G GA GR G+ A+ A PP PRP +R PRP GP
Sbjct: 84 TASAAGPGACMRASGRPHGNTTASTA--------PPRHPRPRRPGGPALRPTPRPCAGPA 135
Query: 289 NNPGSVN-RLRQHQPRPLRRPPPGQAAR 315
P S + R R RP R P G+ R
Sbjct: 136 PPPASRDCRCR----RPRRWPRAGRRGR 159
Score = 30.4 bits (67), Expect = 2.3
Identities = 34/129 (26%), Positives = 44/129 (34%), Gaps = 17/129 (13%)
Query: 142 RPHQQPQHLGGCSSMSAPRRERTKPRSGRSADTEASAPCAGLLVRVLTFDGNSAMAAPLA 201
RPH G ++ +AP R R G A PCAG + D
Sbjct: 99 RPH------GNTTASTAPPRHPRPRRPGGPALRPTPRPCAGPAPPPASRDCRCRRPRRWP 152
Query: 202 SRGRYGRRR---RPSSGGCRLPRRFSPRLRIPVWLQALQEASGLGAWGARCGRDPGSAPA 258
GR GRR +PS G R +P S G+ GAR P A
Sbjct: 153 RAGRRGRRAGACKPSCAGAAWSARGAP--------LCSYRTSCAGSCGARTAPTPAPTCA 204
Query: 259 AGAAPLTLC 267
+ +A + C
Sbjct: 205 SPSAAASSC 213
>gi|118402590 myosin XV [Homo sapiens]
Length = 3530
Score = 38.1 bits (87), Expect = 0.011
Identities = 42/120 (35%), Positives = 45/120 (37%), Gaps = 41/120 (34%)
Query: 247 ARCGRDPGSAPAAGAAPLTLC------SPPPPQPRPVRGQPRP----------LPGPVNN 290
AR D PA AP TL SPP P PRP P P LP P +
Sbjct: 635 ARSSNDARRPPAPQPAPRTLSHWSALLSPPVP-PRPPSSGPPPAPPLSPALSGLPRPASP 693
Query: 291 PGSVNRLRQHQP---RPLRRPPPGQAARW-----------------EFPGSRPG-RGSFR 329
GS LR+H P P PP QA+ W FPG RP RGS R
Sbjct: 694 YGS---LRRHPPPWAAPAHVPPAPQASWWAFVEPPAVSPEVPPDLLAFPGPRPSFRGSRR 750
>gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo
sapiens]
Length = 1747
Score = 38.1 bits (87), Expect = 0.011
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 255 SAPAAGAAPLTLCSPPPPQPRPVRGQPRPLPGPVNNPGSVNRLRQHQPRPLRRP-PPGQA 313
S P AG A + S P P P V G P P PG P S R+R P P P PP +
Sbjct: 422 SGPLAGRAGQSKISDPGPGPGGVGGAPLPPPGA---PRSCIRIRARFPAPPAPPAPPPRG 478
Query: 314 ARWEFPGSRPGR 325
+ + + PGR
Sbjct: 479 PKRKLYSAVPGR 490
Score = 33.1 bits (74), Expect = 0.35
Identities = 36/125 (28%), Positives = 46/125 (36%), Gaps = 17/125 (13%)
Query: 194 SAMAAPLASRGRYGRRRRPSSGGCRLPRRFSPRLRIPVWLQALQEASGLGAWGARCGRDP 253
SA +P G RPS R P + R PV +L+ GLGA GR
Sbjct: 1563 SAQRSPGGPGGGASYSVRPSG---RYP--VARRAPSPVKPASLERVEGLGAGAGGAGRPF 1617
Query: 254 GSAPAAGAAPLTLCSPPPPQ----------PRPVRGQPRPLPGPVN--NPGSVNRLRQHQ 301
G P +L P P+ R P PLP P + PG+ R Q
Sbjct: 1618 GLTPPTILKSSSLSIPHEPKEVRFVVRSVSARSRSPSPSPLPSPASGPGPGAPGPRRPFQ 1677
Query: 302 PRPLR 306
+PL+
Sbjct: 1678 QKPLQ 1682
Score = 28.9 bits (63), Expect = 6.6
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 255 SAPAAGAAPLTLCSPPPPQPRPVRGQPRPLP----GPVNNPGSVNRLRQHQPRPLRRPPP 310
SAP +G AP PPP P R + RP P P N G+ + +P RR P
Sbjct: 914 SAPESGDAP----RPPPAATPPERPKRRPRPPGPDSPYANLGAFSASLFAPSKPQRRKSP 969
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 37.7 bits (86), Expect = 0.014
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 252 DPGSAPAAGAAPLTLCSPPPPQPRPVRGQPRPLPGPVNNPGSVNRLRQHQPRP 304
DPG+ P G +P P P P P+ G P PGP +PGSV+ + P P
Sbjct: 6 DPGAMPHPGPSP-----GPGPSPGPILG---PSPGPGPSPGSVHSMMGPSPGP 50
Score = 34.3 bits (77), Expect = 0.16
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 12/61 (19%)
Query: 250 GRDPGSAPAAGAAPLTLCSPPPPQPRPVRGQPRPLPGPVNNPGSVNRLRQHQPR--PLRR 307
G P AP A A P P P P+P GQP P V +L+Q Q R P+++
Sbjct: 284 GGRPSPAPPAAAQPPAAAVPGPSVPQPAPGQPSP----------VLQLQQKQSRISPIQK 333
Query: 308 P 308
P
Sbjct: 334 P 334
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 37.7 bits (86), Expect = 0.014
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 252 DPGSAPAAGAAPLTLCSPPPPQPRPVRGQPRPLPGPVNNPGSVNRLRQHQPRP 304
DPG+ P G +P P P P P+ G P PGP +PGSV+ + P P
Sbjct: 6 DPGAMPHPGPSP-----GPGPSPGPILG---PSPGPGPSPGSVHSMMGPSPGP 50
Score = 34.3 bits (77), Expect = 0.16
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 12/61 (19%)
Query: 250 GRDPGSAPAAGAAPLTLCSPPPPQPRPVRGQPRPLPGPVNNPGSVNRLRQHQPR--PLRR 307
G P AP A A P P P P+P GQP P V +L+Q Q R P+++
Sbjct: 284 GGRPSPAPPAAAQPPAAAVPGPSVPQPAPGQPSP----------VLQLQQKQSRISPIQK 333
Query: 308 P 308
P
Sbjct: 334 P 334
>gi|14249464 zinc finger and BTB domain containing 45 [Homo sapiens]
Length = 511
Score = 37.7 bits (86), Expect = 0.014
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 251 RDPG-SAPAAGAAPLTLCSPPPPQPRPVRGQPRPLPG--PVNNPGSVNRLRQHQPRPLRR 307
R PG SAP PL PPP P +R + R L P +PG+ + +Q QP L+
Sbjct: 126 RAPGTSAPT----PLPTPVPPPLAPAQLRHRLRHLLAARPPGHPGAAHSRKQRQPARLQL 181
Query: 308 PPPGQAARWEFPGSRP 323
P P A+ E P + P
Sbjct: 182 PAPPTPAKAEGPDADP 197
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 37.7 bits (86), Expect = 0.014
Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 5/110 (4%)
Query: 202 SRGR-YGRRRRPSSGGCRLPRRFSPRLRIPVWLQALQEASGLGAWGARCGRDPGSAPAAG 260
SR R Y RRRPS PRR +P R+P + + S + R R S +
Sbjct: 304 SRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPV----RRRRRSSASLSGSS 359
Query: 261 AAPLTLCSPPPPQPRPVRGQPRPLPGPVNNPGSVNRLRQHQPRPLRRPPP 310
++ + S PP+ P R P +P + R+H+P P PPP
Sbjct: 360 SSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPP 409
Score = 32.0 bits (71), Expect = 0.78
Identities = 56/229 (24%), Positives = 78/229 (34%), Gaps = 29/229 (12%)
Query: 106 KQVEVEEDDCHQPEEDSDEHHPAIGRIQVVRGVRNQRPHQQPQHLGGCSSMSAPRRERTK 165
++VE+ E EED A +Q R R Q Q G SS R +R+
Sbjct: 458 RKVELSES-----EEDKGGKMAAADSVQQRRQYRRQN-QQSSSDSGSSSSSEDERPKRSH 511
Query: 166 PRSGRSADTEASAPCAGLLVRVLTFDGNSAMAAP------LASRGRYGRRRRPSSGGCRL 219
++G +P SA +P + RGR RRR PS R
Sbjct: 512 VKNGEVGRRRRHSP------------SRSASPSPRKRQKETSPRGR--RRRSPSPPPTR- 556
Query: 220 PRRFSPRLRIPVWLQALQEASGLGAWGARCGRDPGSAPAAGAAPLTLCSPPPPQPRPVRG 279
RR SP P + + R +P + P+ P P P+
Sbjct: 557 -RRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTA 615
Query: 280 QPRPLPGPVNNPGSVNRLR-QHQPRPLRRPPPGQAARWEFPGSRPGRGS 327
P P P +P + R H P P +R P R S+ +GS
Sbjct: 616 SPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGS 664
Score = 28.9 bits (63), Expect = 6.6
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 254 GSAPAAGAAPLTLCSPPP-----PQPRPVRGQPRPLPGPVNNPGSVNRLRQHQPRPLRRP 308
GS+P+ SP P P PRP Q P PV S + R+ P P RP
Sbjct: 663 GSSPSRSTREAR--SPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRP 720
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,051,571
Number of Sequences: 37866
Number of extensions: 1225139
Number of successful extensions: 12040
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 744
Number of HSP's that attempted gapping in prelim test: 8871
Number of HSP's gapped (non-prelim): 3132
length of query: 330
length of database: 18,247,518
effective HSP length: 103
effective length of query: 227
effective length of database: 14,347,320
effective search space: 3256841640
effective search space used: 3256841640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.