Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239750986
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750986 PREDICTED: hypothetical protein XP_002347637 [Homo
sapiens]
(377 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756458 PREDICTED: similar to ZNF668 protein [Homo sapiens] 793 0.0
gi|239750986 PREDICTED: hypothetical protein XP_002347637 [Homo ... 793 0.0
gi|239745391 PREDICTED: hypothetical protein XP_002343487 [Homo ... 793 0.0
gi|239757367 PREDICTED: hypothetical protein [Homo sapiens] 76 6e-14
gi|239751919 PREDICTED: hypothetical protein XP_002348040 [Homo ... 76 6e-14
gi|239746409 PREDICTED: hypothetical protein XP_002343743 [Homo ... 76 6e-14
gi|239754259 PREDICTED: hypothetical protein XP_002345937 [Homo ... 65 1e-10
gi|239748797 PREDICTED: hypothetical protein XP_002346805 [Homo ... 65 1e-10
gi|239742834 PREDICTED: hypothetical protein XP_002342675 [Homo ... 65 1e-10
gi|239751880 PREDICTED: hypothetical protein XP_002348020 [Homo ... 49 6e-06
gi|239746369 PREDICTED: hypothetical protein XP_002343699 [Homo ... 49 6e-06
gi|239746366 PREDICTED: hypothetical protein XP_002343738 [Homo ... 48 1e-05
gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo ... 44 2e-04
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 40 0.003
gi|239757412 PREDICTED: hypothetical protein XP_002345272 [Homo ... 39 0.006
gi|145309315 G protein-coupled receptor 62 [Homo sapiens] 34 0.25
gi|169160919 PREDICTED: hypothetical protein [Homo sapiens] 31 2.1
gi|169162159 PREDICTED: hypothetical protein [Homo sapiens] 31 2.1
gi|169161152 PREDICTED: hypothetical protein [Homo sapiens] 31 2.1
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi... 31 2.1
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 31 2.1
gi|156104862 ankyrin repeat domain 38 [Homo sapiens] 31 2.1
gi|229892328 IQ motif containing C isoform 1 [Homo sapiens] 30 2.7
gi|229892326 IQ motif containing C isoform 2 [Homo sapiens] 30 2.7
gi|124107616 claudin 23 [Homo sapiens] 30 3.6
gi|169168601 PREDICTED: hypothetical protein [Homo sapiens] 30 4.6
gi|169169523 PREDICTED: hypothetical protein [Homo sapiens] 30 4.6
gi|23943787 dermatan sulfate epimerase-like [Homo sapiens] 30 4.6
gi|16306552 semaphorin Y [Homo sapiens] 30 4.6
gi|215422370 solute carrier family 10, member 3 isoform 1 [Homo ... 29 6.1
>gi|239756458 PREDICTED: similar to ZNF668 protein [Homo sapiens]
Length = 377
Score = 793 bits (2049), Expect = 0.0
Identities = 377/377 (100%), Positives = 377/377 (100%)
Query: 1 MRDEVRALLEALVALSAAEGPLTGVHTPMVQQEKGFSPVCTPWWRTRSEELRKLLSHSGH 60
MRDEVRALLEALVALSAAEGPLTGVHTPMVQQEKGFSPVCTPWWRTRSEELRKLLSHSGH
Sbjct: 1 MRDEVRALLEALVALSAAEGPLTGVHTPMVQQEKGFSPVCTPWWRTRSEELRKLLSHSGH 60
Query: 61 LCGFSPVCVRWCRARSEPQRKRFPHCPQLCGFSAARSRNWRRRGNAGDKARSLPSHSTVH 120
LCGFSPVCVRWCRARSEPQRKRFPHCPQLCGFSAARSRNWRRRGNAGDKARSLPSHSTVH
Sbjct: 61 LCGFSPVCVRWCRARSEPQRKRFPHCPQLCGFSAARSRNWRRRGNAGDKARSLPSHSTVH 120
Query: 121 KNGGLLTAMAVLLLGNRRPPPCPHRRGRPRGLGSPACSLGFRLLRGHILCRNHNMLISPR 180
KNGGLLTAMAVLLLGNRRPPPCPHRRGRPRGLGSPACSLGFRLLRGHILCRNHNMLISPR
Sbjct: 121 KNGGLLTAMAVLLLGNRRPPPCPHRRGRPRGLGSPACSLGFRLLRGHILCRNHNMLISPR 180
Query: 181 PDRGRQSLLPGKETQDMTLRMLGCGKETNMVLHQGDSLLTASRVLLTHPALDLPWQHCQE 240
PDRGRQSLLPGKETQDMTLRMLGCGKETNMVLHQGDSLLTASRVLLTHPALDLPWQHCQE
Sbjct: 181 PDRGRQSLLPGKETQDMTLRMLGCGKETNMVLHQGDSLLTASRVLLTHPALDLPWQHCQE 240
Query: 241 LLQHQQLQDLLLGTQLGPQPAAAELPELAEGLMRPMHIPVAELPEALAAGFGIPAILMLG 300
LLQHQQLQDLLLGTQLGPQPAAAELPELAEGLMRPMHIPVAELPEALAAGFGIPAILMLG
Sbjct: 241 LLQHQQLQDLLLGTQLGPQPAAAELPELAEGLMRPMHIPVAELPEALAAGFGIPAILMLG 300
Query: 301 RFLFPGGIFHFHNQKPFSLPRGLVLGLQGGCHSPGLRLRVGRLQPGPQNLYFQSPRGIPC 360
RFLFPGGIFHFHNQKPFSLPRGLVLGLQGGCHSPGLRLRVGRLQPGPQNLYFQSPRGIPC
Sbjct: 301 RFLFPGGIFHFHNQKPFSLPRGLVLGLQGGCHSPGLRLRVGRLQPGPQNLYFQSPRGIPC 360
Query: 361 GSWAGIWMCARTILILW 377
GSWAGIWMCARTILILW
Sbjct: 361 GSWAGIWMCARTILILW 377
>gi|239750986 PREDICTED: hypothetical protein XP_002347637 [Homo
sapiens]
Length = 377
Score = 793 bits (2049), Expect = 0.0
Identities = 377/377 (100%), Positives = 377/377 (100%)
Query: 1 MRDEVRALLEALVALSAAEGPLTGVHTPMVQQEKGFSPVCTPWWRTRSEELRKLLSHSGH 60
MRDEVRALLEALVALSAAEGPLTGVHTPMVQQEKGFSPVCTPWWRTRSEELRKLLSHSGH
Sbjct: 1 MRDEVRALLEALVALSAAEGPLTGVHTPMVQQEKGFSPVCTPWWRTRSEELRKLLSHSGH 60
Query: 61 LCGFSPVCVRWCRARSEPQRKRFPHCPQLCGFSAARSRNWRRRGNAGDKARSLPSHSTVH 120
LCGFSPVCVRWCRARSEPQRKRFPHCPQLCGFSAARSRNWRRRGNAGDKARSLPSHSTVH
Sbjct: 61 LCGFSPVCVRWCRARSEPQRKRFPHCPQLCGFSAARSRNWRRRGNAGDKARSLPSHSTVH 120
Query: 121 KNGGLLTAMAVLLLGNRRPPPCPHRRGRPRGLGSPACSLGFRLLRGHILCRNHNMLISPR 180
KNGGLLTAMAVLLLGNRRPPPCPHRRGRPRGLGSPACSLGFRLLRGHILCRNHNMLISPR
Sbjct: 121 KNGGLLTAMAVLLLGNRRPPPCPHRRGRPRGLGSPACSLGFRLLRGHILCRNHNMLISPR 180
Query: 181 PDRGRQSLLPGKETQDMTLRMLGCGKETNMVLHQGDSLLTASRVLLTHPALDLPWQHCQE 240
PDRGRQSLLPGKETQDMTLRMLGCGKETNMVLHQGDSLLTASRVLLTHPALDLPWQHCQE
Sbjct: 181 PDRGRQSLLPGKETQDMTLRMLGCGKETNMVLHQGDSLLTASRVLLTHPALDLPWQHCQE 240
Query: 241 LLQHQQLQDLLLGTQLGPQPAAAELPELAEGLMRPMHIPVAELPEALAAGFGIPAILMLG 300
LLQHQQLQDLLLGTQLGPQPAAAELPELAEGLMRPMHIPVAELPEALAAGFGIPAILMLG
Sbjct: 241 LLQHQQLQDLLLGTQLGPQPAAAELPELAEGLMRPMHIPVAELPEALAAGFGIPAILMLG 300
Query: 301 RFLFPGGIFHFHNQKPFSLPRGLVLGLQGGCHSPGLRLRVGRLQPGPQNLYFQSPRGIPC 360
RFLFPGGIFHFHNQKPFSLPRGLVLGLQGGCHSPGLRLRVGRLQPGPQNLYFQSPRGIPC
Sbjct: 301 RFLFPGGIFHFHNQKPFSLPRGLVLGLQGGCHSPGLRLRVGRLQPGPQNLYFQSPRGIPC 360
Query: 361 GSWAGIWMCARTILILW 377
GSWAGIWMCARTILILW
Sbjct: 361 GSWAGIWMCARTILILW 377
>gi|239745391 PREDICTED: hypothetical protein XP_002343487 [Homo
sapiens]
Length = 417
Score = 793 bits (2049), Expect = 0.0
Identities = 377/377 (100%), Positives = 377/377 (100%)
Query: 1 MRDEVRALLEALVALSAAEGPLTGVHTPMVQQEKGFSPVCTPWWRTRSEELRKLLSHSGH 60
MRDEVRALLEALVALSAAEGPLTGVHTPMVQQEKGFSPVCTPWWRTRSEELRKLLSHSGH
Sbjct: 41 MRDEVRALLEALVALSAAEGPLTGVHTPMVQQEKGFSPVCTPWWRTRSEELRKLLSHSGH 100
Query: 61 LCGFSPVCVRWCRARSEPQRKRFPHCPQLCGFSAARSRNWRRRGNAGDKARSLPSHSTVH 120
LCGFSPVCVRWCRARSEPQRKRFPHCPQLCGFSAARSRNWRRRGNAGDKARSLPSHSTVH
Sbjct: 101 LCGFSPVCVRWCRARSEPQRKRFPHCPQLCGFSAARSRNWRRRGNAGDKARSLPSHSTVH 160
Query: 121 KNGGLLTAMAVLLLGNRRPPPCPHRRGRPRGLGSPACSLGFRLLRGHILCRNHNMLISPR 180
KNGGLLTAMAVLLLGNRRPPPCPHRRGRPRGLGSPACSLGFRLLRGHILCRNHNMLISPR
Sbjct: 161 KNGGLLTAMAVLLLGNRRPPPCPHRRGRPRGLGSPACSLGFRLLRGHILCRNHNMLISPR 220
Query: 181 PDRGRQSLLPGKETQDMTLRMLGCGKETNMVLHQGDSLLTASRVLLTHPALDLPWQHCQE 240
PDRGRQSLLPGKETQDMTLRMLGCGKETNMVLHQGDSLLTASRVLLTHPALDLPWQHCQE
Sbjct: 221 PDRGRQSLLPGKETQDMTLRMLGCGKETNMVLHQGDSLLTASRVLLTHPALDLPWQHCQE 280
Query: 241 LLQHQQLQDLLLGTQLGPQPAAAELPELAEGLMRPMHIPVAELPEALAAGFGIPAILMLG 300
LLQHQQLQDLLLGTQLGPQPAAAELPELAEGLMRPMHIPVAELPEALAAGFGIPAILMLG
Sbjct: 281 LLQHQQLQDLLLGTQLGPQPAAAELPELAEGLMRPMHIPVAELPEALAAGFGIPAILMLG 340
Query: 301 RFLFPGGIFHFHNQKPFSLPRGLVLGLQGGCHSPGLRLRVGRLQPGPQNLYFQSPRGIPC 360
RFLFPGGIFHFHNQKPFSLPRGLVLGLQGGCHSPGLRLRVGRLQPGPQNLYFQSPRGIPC
Sbjct: 341 RFLFPGGIFHFHNQKPFSLPRGLVLGLQGGCHSPGLRLRVGRLQPGPQNLYFQSPRGIPC 400
Query: 361 GSWAGIWMCARTILILW 377
GSWAGIWMCARTILILW
Sbjct: 401 GSWAGIWMCARTILILW 417
>gi|239757367 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 75.9 bits (185), Expect = 6e-14
Identities = 48/105 (45%), Positives = 59/105 (56%), Gaps = 3/105 (2%)
Query: 206 KETNMVLHQGDSLLTASRVLLTHPALDLPWQHCQELLQHQQLQDLLLGTQLGPQPAAAEL 265
++ + LHQG LL A RVL HP DL Q QELLQHQQLQ LLLG +L QP AA+L
Sbjct: 29 QDISEALHQGGCLLAALRVLCHHPGPDLIRQDAQELLQHQQLQHLLLGARLRHQPLAAQL 88
Query: 266 PELAEGLMRPMHIPVAELPEALAAGFGI---PAILMLGRFLFPGG 307
+ +GL+ P + V + PE A + P LG FL G
Sbjct: 89 MQPGQGLVGPGSLLVDKFPETQAGELQVSRGPLRDGLGFFLLDSG 133
>gi|239751919 PREDICTED: hypothetical protein XP_002348040 [Homo
sapiens]
Length = 134
Score = 75.9 bits (185), Expect = 6e-14
Identities = 48/105 (45%), Positives = 59/105 (56%), Gaps = 3/105 (2%)
Query: 206 KETNMVLHQGDSLLTASRVLLTHPALDLPWQHCQELLQHQQLQDLLLGTQLGPQPAAAEL 265
++ + LHQG LL A RVL HP DL Q QELLQHQQLQ LLLG +L QP AA+L
Sbjct: 29 QDISEALHQGGCLLAALRVLCHHPGPDLIRQDAQELLQHQQLQHLLLGARLRHQPLAAQL 88
Query: 266 PELAEGLMRPMHIPVAELPEALAAGFGI---PAILMLGRFLFPGG 307
+ +GL+ P + V + PE A + P LG FL G
Sbjct: 89 MQPGQGLVGPGSLLVDKFPETQAGELQVSRGPLRDGLGFFLLDSG 133
>gi|239746409 PREDICTED: hypothetical protein XP_002343743 [Homo
sapiens]
Length = 134
Score = 75.9 bits (185), Expect = 6e-14
Identities = 48/105 (45%), Positives = 59/105 (56%), Gaps = 3/105 (2%)
Query: 206 KETNMVLHQGDSLLTASRVLLTHPALDLPWQHCQELLQHQQLQDLLLGTQLGPQPAAAEL 265
++ + LHQG LL A RVL HP DL Q QELLQHQQLQ LLLG +L QP AA+L
Sbjct: 29 QDISEALHQGGCLLAALRVLCHHPGPDLIRQDAQELLQHQQLQHLLLGARLRHQPLAAQL 88
Query: 266 PELAEGLMRPMHIPVAELPEALAAGFGI---PAILMLGRFLFPGG 307
+ +GL+ P + V + PE A + P LG FL G
Sbjct: 89 MQPGQGLVGPGSLLVDKFPETQAGELQVSRGPLRDGLGFFLLDSG 133
>gi|239754259 PREDICTED: hypothetical protein XP_002345937 [Homo
sapiens]
Length = 105
Score = 65.1 bits (157), Expect = 1e-10
Identities = 37/65 (56%), Positives = 42/65 (64%)
Query: 224 VLLTHPALDLPWQHCQELLQHQQLQDLLLGTQLGPQPAAAELPELAEGLMRPMHIPVAEL 283
+LL HPAL +P Q QELLQHQQLQDLLL L QP +AEL E + L + VAE
Sbjct: 1 MLLPHPALQIPRQDGQELLQHQQLQDLLLAVHLRLQPLSAELSEPTQRLAGACSLRVAEA 60
Query: 284 PEALA 288
EALA
Sbjct: 61 SEALA 65
>gi|239748797 PREDICTED: hypothetical protein XP_002346805 [Homo
sapiens]
Length = 105
Score = 65.1 bits (157), Expect = 1e-10
Identities = 37/65 (56%), Positives = 42/65 (64%)
Query: 224 VLLTHPALDLPWQHCQELLQHQQLQDLLLGTQLGPQPAAAELPELAEGLMRPMHIPVAEL 283
+LL HPAL +P Q QELLQHQQLQDLLL L QP +AEL E + L + VAE
Sbjct: 1 MLLPHPALQIPRQDGQELLQHQQLQDLLLAVHLRLQPLSAELSEPTQRLAGACSLRVAEA 60
Query: 284 PEALA 288
EALA
Sbjct: 61 SEALA 65
>gi|239742834 PREDICTED: hypothetical protein XP_002342675 [Homo
sapiens]
Length = 105
Score = 65.1 bits (157), Expect = 1e-10
Identities = 37/65 (56%), Positives = 42/65 (64%)
Query: 224 VLLTHPALDLPWQHCQELLQHQQLQDLLLGTQLGPQPAAAELPELAEGLMRPMHIPVAEL 283
+LL HPAL +P Q QELLQHQQLQDLLL L QP +AEL E + L + VAE
Sbjct: 1 MLLPHPALQIPRQDGQELLQHQQLQDLLLAVHLRLQPLSAELSEPTQRLAGACSLRVAEA 60
Query: 284 PEALA 288
EALA
Sbjct: 61 SEALA 65
>gi|239751880 PREDICTED: hypothetical protein XP_002348020 [Homo
sapiens]
Length = 146
Score = 49.3 bits (116), Expect = 6e-06
Identities = 27/69 (39%), Positives = 30/69 (43%)
Query: 35 GFSPVCTPWWRTRSEELRKLLSHSGHLCGFSPVCVRWCRARSEPQRKRFPHCPQLCGFSA 94
G SP CT WW S RK HSG G P + CR R + K P CGFS+
Sbjct: 75 GRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWLERLKVLPQTLHWCGFSS 134
Query: 95 ARSRNWRRR 103
WR R
Sbjct: 135 ECEMLWRSR 143
Score = 34.7 bits (78), Expect = 0.14
Identities = 30/85 (35%), Positives = 32/85 (37%), Gaps = 8/85 (9%)
Query: 21 PLTGVH--TPMVQQEKGFSPVCTPWWRTRSEELRKLLSHSGHLCGFSPVCVRWCRARSEP 78
P +G H TPM F+ WR K GH G SP C RW A S
Sbjct: 37 PGSGAHRGTPMASGCLRFA------WRRSVLASVKRSRQMGHWYGRSPECTRWWCASSPA 90
Query: 79 QRKRFPHCPQLCGFSAARSRNWRRR 103
RKR H Q G A RRR
Sbjct: 91 SRKRRGHSGQRKGRRPAWMLQCRRR 115
>gi|239746369 PREDICTED: hypothetical protein XP_002343699 [Homo
sapiens]
Length = 146
Score = 49.3 bits (116), Expect = 6e-06
Identities = 27/69 (39%), Positives = 30/69 (43%)
Query: 35 GFSPVCTPWWRTRSEELRKLLSHSGHLCGFSPVCVRWCRARSEPQRKRFPHCPQLCGFSA 94
G SP CT WW S RK HSG G P + CR R + K P CGFS+
Sbjct: 75 GRSPECTRWWCASSPASRKRRGHSGQRKGRRPAWMLQCRRRWLERLKVLPQTLHWCGFSS 134
Query: 95 ARSRNWRRR 103
WR R
Sbjct: 135 ECEMLWRSR 143
Score = 34.7 bits (78), Expect = 0.14
Identities = 30/85 (35%), Positives = 32/85 (37%), Gaps = 8/85 (9%)
Query: 21 PLTGVH--TPMVQQEKGFSPVCTPWWRTRSEELRKLLSHSGHLCGFSPVCVRWCRARSEP 78
P +G H TPM F+ WR K GH G SP C RW A S
Sbjct: 37 PGSGAHRGTPMASGCLRFA------WRRSVLASVKRSRQMGHWYGRSPECTRWWCASSPA 90
Query: 79 QRKRFPHCPQLCGFSAARSRNWRRR 103
RKR H Q G A RRR
Sbjct: 91 SRKRRGHSGQRKGRRPAWMLQCRRR 115
>gi|239746366 PREDICTED: hypothetical protein XP_002343738 [Homo
sapiens]
Length = 522
Score = 48.1 bits (113), Expect = 1e-05
Identities = 27/62 (43%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 32 QEKGFSPVCTPWWRTRSEELRKLLSHSGHLCGFS------PVCVRWCRARSEPQRKRFPH 85
Q KG SPVCT W R E KLL + G S PVC RW A E + K PH
Sbjct: 323 QRKGRSPVCTRWCCRRLEVCAKLLPQTPQAWGLSPVKARRPVCTRWWMASREERLKALPH 382
Query: 86 CP 87
P
Sbjct: 383 SP 384
Score = 46.2 bits (108), Expect = 5e-05
Identities = 24/52 (46%), Positives = 27/52 (51%)
Query: 47 RSEELRKLLSHSGHLCGFSPVCVRWCRARSEPQRKRFPHCPQLCGFSAARSR 98
R EE K+L SG G SPVC RWC R E K P PQ G S ++R
Sbjct: 310 RLEEWVKVLGQSGQRKGRSPVCTRWCCRRLEVCAKLLPQTPQAWGLSPVKAR 361
Score = 40.4 bits (93), Expect = 0.003
Identities = 23/50 (46%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 44 WR----TRSEELRKLLSHSGHLCGFSPVCVRWCRARSEPQRKRFPHCPQL 89
WR +R EE K+L SG G SPVC RWC R K FP PQ+
Sbjct: 473 WRCRCSSRLEEWVKVLGQSGQRKGRSPVCTRWCCRRLVLCVKLFPQTPQV 522
Score = 33.1 bits (74), Expect = 0.42
Identities = 14/27 (51%), Positives = 14/27 (51%)
Query: 34 KGFSPVCTPWWRTRSEELRKLLSHSGH 60
K PVCT WW EE K L HS H
Sbjct: 359 KARRPVCTRWWMASREERLKALPHSPH 385
>gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo
sapiens]
Length = 944
Score = 43.9 bits (102), Expect = 2e-04
Identities = 47/168 (27%), Positives = 58/168 (34%), Gaps = 32/168 (19%)
Query: 4 EVRALLEALVALSAAEGPLTGVHTPMVQQE--------------KGFSPVCTPWWRTRSE 49
+V AL EAL A S GPL GVH + Q K PVCT W E
Sbjct: 782 QVGALREALPADSTGVGPLAGVHVAVAPQAGRVLEGLGAVRARMKARRPVCTLRWICSRE 841
Query: 50 ELRKLLSHSGHLCGFSPVCVRWCRARSEPQRKRFPHCPQ--LCGFSAARSRNWRRRGNAG 107
E K L SGH W R + R PH P + A + +A
Sbjct: 842 ERLKALGQSGH----------WSR---DDHRNDLPHSPHSYWAAGAGAAGPGFSPAPSAV 888
Query: 108 DKARSLPSHSTVHKNGGLLTAMAVLLLGNRRPPPCPHRRGRPRGLGSP 155
+ T+ GG+L L + P P G +G G P
Sbjct: 889 EAGAMSAWEPTITPGGGILGQRLTPALDHLNPKP---THGLFKGQGLP 933
Score = 37.0 bits (84), Expect = 0.029
Identities = 18/34 (52%), Positives = 20/34 (58%)
Query: 47 RSEELRKLLSHSGHLCGFSPVCVRWCRARSEPQR 80
R EE K+L SG G SPVC RWC R E +R
Sbjct: 390 RLEEWVKVLGQSGQRKGRSPVCTRWCCRRLEARR 423
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 40.4 bits (93), Expect = 0.003
Identities = 44/131 (33%), Positives = 53/131 (40%), Gaps = 14/131 (10%)
Query: 26 HTPMVQQEKGFSPVCTPWWRTRSEELRKLLSHSGHLCGFSPV------CVRWCRARSEPQ 79
HTP + + SP R+RS K GH SP RW R+RS PQ
Sbjct: 475 HTPSRRMGRSRSPATAKRGRSRSRTPTK----RGHSRSRSPQWRRSRSAQRWGRSRS-PQ 529
Query: 80 RKRFPHCPQLCGFSAARSRNWRRRGNAGDKARSLPSHSTVHKNGGLLTAMAVLLLGNRRP 139
R+ PQ G+S RSRN +RRG + AR SHS G + G R
Sbjct: 530 RRGRSRSPQRPGWS--RSRNTQRRGRS-RSARRGRSHSRSPATRGRSRSRTPARRGRSRS 586
Query: 140 PPCPHRRGRPR 150
RR R R
Sbjct: 587 RTPARRRSRSR 597
>gi|239757412 PREDICTED: hypothetical protein XP_002345272 [Homo
sapiens]
Length = 564
Score = 39.3 bits (90), Expect = 0.006
Identities = 21/42 (50%), Positives = 22/42 (52%)
Query: 47 RSEELRKLLSHSGHLCGFSPVCVRWCRARSEPQRKRFPHCPQ 88
R EE K+L SG G SPVC RWC R K FP PQ
Sbjct: 390 RLEEWVKVLGQSGQRKGRSPVCTRWCCRRLVLCVKLFPQTPQ 431
Score = 31.6 bits (70), Expect = 1.2
Identities = 34/130 (26%), Positives = 43/130 (33%), Gaps = 18/130 (13%)
Query: 28 PMVQQEKGFSPVCTPWWRTRSEELRKLLSHSGHLCGFSPVCVRWCRARSEPQRKRFPHCP 87
P Q K PVCT W EE K L SGH W R + R PH P
Sbjct: 440 PHWPQMKARRPVCTLRWICSREERLKALGQSGH----------WSR---DDHRNDLPHSP 486
Query: 88 Q--LCGFSAARSRNWRRRGNAGDKARSLPSHSTVHKNGGLLTAMAVLLLGNRRPPPCPHR 145
+ A + +A + T+ GG+L L + P P
Sbjct: 487 HSYWAAGAGAAGPGFSPAPSAVEAGAMSAWEPTITPGGGILGQRLTPALDHLNPKP---T 543
Query: 146 RGRPRGLGSP 155
G +G G P
Sbjct: 544 HGLFKGQGLP 553
>gi|145309315 G protein-coupled receptor 62 [Homo sapiens]
Length = 368
Score = 33.9 bits (76), Expect = 0.25
Identities = 33/97 (34%), Positives = 41/97 (42%), Gaps = 17/97 (17%)
Query: 251 LLGTQLGPQPAAAELPELAEGL--MRPMHIPVAELPEALAAGFGIPAILMLGRFLFPGGI 308
LLGT P PA A LA GL RP+ +A F +PA+L+LG + GGI
Sbjct: 148 LLGTPPAPPPAPARCSVLAGGLGPFRPLWALLA---------FALPALLLLGAY---GGI 195
Query: 309 FHFHNQKPFSLPRGLVLGLQGGCHSPGLRLRVGRLQP 345
F + PR HS L R+ L P
Sbjct: 196 FVVARRAALRPPRP---ARGSRLHSDSLDSRLSILPP 229
>gi|169160919 PREDICTED: hypothetical protein [Homo sapiens]
Length = 404
Score = 30.8 bits (68), Expect = 2.1
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 11/52 (21%)
Query: 10 EALVALSAAEGPLTGVHTPMVQQEKGFSPVCTPWWRTRSEELRKLLSHSGHL 61
EAL+AL+ AEG L GVH +V Q R E L L +H G L
Sbjct: 209 EALLALATAEGLLAGVHAQVVHQV-----------RVTPEALPALAAHVGPL 249
>gi|169162159 PREDICTED: hypothetical protein [Homo sapiens]
Length = 404
Score = 30.8 bits (68), Expect = 2.1
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 11/52 (21%)
Query: 10 EALVALSAAEGPLTGVHTPMVQQEKGFSPVCTPWWRTRSEELRKLLSHSGHL 61
EAL+AL+ AEG L GVH +V Q R E L L +H G L
Sbjct: 209 EALLALATAEGLLAGVHAQVVHQV-----------RVTPEALPALAAHVGPL 249
>gi|169161152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 404
Score = 30.8 bits (68), Expect = 2.1
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 11/52 (21%)
Query: 10 EALVALSAAEGPLTGVHTPMVQQEKGFSPVCTPWWRTRSEELRKLLSHSGHL 61
EAL+AL+ AEG L GVH +V Q R E L L +H G L
Sbjct: 209 EALLALATAEGLLAGVHAQVVHQV-----------RVTPEALPALAAHVGPL 249
>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
sapiens]
Length = 674
Score = 30.8 bits (68), Expect = 2.1
Identities = 45/175 (25%), Positives = 60/175 (34%), Gaps = 9/175 (5%)
Query: 11 ALVALSAAEGPLTGVHTPMVQQEKGFSPVCTPWWRTRSEELRKLLSHSGHLCGFSPVCVR 70
A A +AA G TG P Q G +P R+ R+ S S S
Sbjct: 341 AAAAAAAASGVTTG-KPPAPPQPGGPAP-------GRNASARRRSSSSSSSSSASRTSSS 392
Query: 71 WCRARSEPQRKRFPHCPQLCGFSAARSRNWRRRGNAGDKARSLPSHSTVHKNGGLLTAMA 130
+RS + +R + + +RSR+W R + + S H GG
Sbjct: 393 RSSSRSSSRSRRGGGYYRSGRHARSRSRSWSRSRSRSRRYSRSRSRGRRHSGGGSRDGHR 452
Query: 131 VLLLGNRRPPPCPHRRGRPRGLGSPACSLGFRLLRGHILCRNHNMLISPRPDRGR 185
RR P RR R R G R LR H R+ + S P R R
Sbjct: 453 YSRSPARRGGYGPRRRSRSRSHSGDRYRRGGRGLRHHSSSRSRSSW-SLSPSRSR 506
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 30.8 bits (68), Expect = 2.1
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 18/94 (19%)
Query: 103 RGNAGDKARSLPSHSTVHKNGGLLTAMAVLLLGNRRPPPCPHRRG--RPRGLGSPACSLG 160
RG+ + + S + ++ G L+ +V L +RPPP P R RGL P LG
Sbjct: 461 RGSPSGGSTAEASDTLSIRSSGQLSGRSVSLRKLKRPPPPPRRTHSLHQRGLAVPDGPLG 520
Query: 161 FRLLRGHILCRNHNMLISPRPDRGRQSLLPGKET 194
+ P+P+R +Q LP T
Sbjct: 521 ----------------LPPKPERKQQPQLPRPPT 538
>gi|156104862 ankyrin repeat domain 38 [Homo sapiens]
Length = 995
Score = 30.8 bits (68), Expect = 2.1
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 11/60 (18%)
Query: 184 GRQSLLPG--KETQDMTLRMLGCGKETNMVLHQGDSLLTAS---------RVLLTHPALD 232
G+ +L+ G + +DM +L C + N+ H G S L + R+LL HPA D
Sbjct: 896 GQTALMLGVSHDREDMVQALLSCQADVNLQDHDGSSALMVACHHGNVDLVRLLLAHPACD 955
>gi|229892328 IQ motif containing C isoform 1 [Homo sapiens]
Length = 546
Score = 30.4 bits (67), Expect = 2.7
Identities = 41/159 (25%), Positives = 64/159 (40%), Gaps = 29/159 (18%)
Query: 120 HKNGGLLTAMAVLLLGNRRPPPCPHRRGRPRGLGSPACSLGFRLLRGHILCRNHNMLISP 179
H++ G L + G + PC + G P + S + +LG RL +G
Sbjct: 335 HRSPGSLATTQKNIAGAKCREPCYSKSGPPSSIPSNSQALGDRLTKG------------- 381
Query: 180 RPDRGRQS-----LLPGKETQDMTLRML----GCGKETN---MVLHQGDSLLTASRVLLT 227
PD GRQ+ LL K +D T R L C +++ L++ ++ S L
Sbjct: 382 -PDDGRQTFGGTCLLQMKILEDQTPRGLKPRNHCPRKSRTQLSALYEDSNIKEMSPRKLD 440
Query: 228 HPALDLPWQHCQEL-LQHQQLQDLLLGTQLGPQPAAAEL 265
H D QEL L + + GT GP+ + +L
Sbjct: 441 HKEPDCRTVRTQELGLSEDHI--IWDGTLGGPEHSVLDL 477
>gi|229892326 IQ motif containing C isoform 2 [Homo sapiens]
Length = 466
Score = 30.4 bits (67), Expect = 2.7
Identities = 41/159 (25%), Positives = 64/159 (40%), Gaps = 29/159 (18%)
Query: 120 HKNGGLLTAMAVLLLGNRRPPPCPHRRGRPRGLGSPACSLGFRLLRGHILCRNHNMLISP 179
H++ G L + G + PC + G P + S + +LG RL +G
Sbjct: 255 HRSPGSLATTQKNIAGAKCREPCYSKSGPPSSIPSNSQALGDRLTKG------------- 301
Query: 180 RPDRGRQS-----LLPGKETQDMTLRML----GCGKETN---MVLHQGDSLLTASRVLLT 227
PD GRQ+ LL K +D T R L C +++ L++ ++ S L
Sbjct: 302 -PDDGRQTFGGTCLLQMKILEDQTPRGLKPRNHCPRKSRTQLSALYEDSNIKEMSPRKLD 360
Query: 228 HPALDLPWQHCQEL-LQHQQLQDLLLGTQLGPQPAAAEL 265
H D QEL L + + GT GP+ + +L
Sbjct: 361 HKEPDCRTVRTQELGLSEDHI--IWDGTLGGPEHSVLDL 397
>gi|124107616 claudin 23 [Homo sapiens]
Length = 292
Score = 30.0 bits (66), Expect = 3.6
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 96 RSRNWRRRGNAGDKARSLPSHSTVHKNGGLLTAMAVLLLGNRRPPPCPHRRGRPR 150
R R R+ +AG + S+ + L A+ G RPPP HR+ +P+
Sbjct: 188 RCRRRRKGPSAGPRRSSVSTIQVEWPEPDLAPAIKYYSDGQHRPPPAQHRKPKPK 242
>gi|169168601 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 29.6 bits (65), Expect = 4.6
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 13/125 (10%)
Query: 119 VHKNGGLLTAMAVLLLGNRRPPPCPHRRGRPRGL-GSPACSLGFRLLRGHILCRNHNMLI 177
+H N L++ +R P C R RP S A S FRLL +
Sbjct: 40 IHPNRSLISLCGSPGPPSRPEPKCLGSRERPVPFFSSLATSSHFRLLT-----------V 88
Query: 178 SPRPDRGRQSLLPGKETQDMTLRMLGCGKETNM-VLHQGDSLLTASRVLLTHPALDLPWQ 236
+P + + L PG E ++ + G + ++ +L LL++ ++ THP L + +
Sbjct: 89 PKQPPKTLRELGPGPEAENGRKKRSGRFIKLSLQILQYRHCLLSSLWMVCTHPCLQVFRK 148
Query: 237 HCQEL 241
+ QEL
Sbjct: 149 NAQEL 153
>gi|169169523 PREDICTED: hypothetical protein [Homo sapiens]
Length = 154
Score = 29.6 bits (65), Expect = 4.6
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 13/125 (10%)
Query: 119 VHKNGGLLTAMAVLLLGNRRPPPCPHRRGRPRGL-GSPACSLGFRLLRGHILCRNHNMLI 177
+H N L++ +R P C R RP S A S FRLL +
Sbjct: 40 IHPNRSLISLCGSPGPPSRPEPKCLGSRERPVPFFSSLATSSHFRLLT-----------V 88
Query: 178 SPRPDRGRQSLLPGKETQDMTLRMLGCGKETNM-VLHQGDSLLTASRVLLTHPALDLPWQ 236
+P + + L PG E ++ + G + ++ +L LL++ ++ THP L + +
Sbjct: 89 PKQPPKTLRELGPGPEAENGRKKRSGRFIKLSLQILQYRHCLLSSLWMVCTHPCLQVFRK 148
Query: 237 HCQEL 241
+ QEL
Sbjct: 149 NAQEL 153
>gi|23943787 dermatan sulfate epimerase-like [Homo sapiens]
Length = 1222
Score = 29.6 bits (65), Expect = 4.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 38 PVCTPWWRTRSEELRKLLSHSGH 60
P+C W RT +E +K LS GH
Sbjct: 836 PICAKWTRTEAEGSKKSLSSEGH 858
>gi|16306552 semaphorin Y [Homo sapiens]
Length = 930
Score = 29.6 bits (65), Expect = 4.6
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 239 QELLQHQQLQDLLLGTQLGPQPAA----AELPELAEGLMRPMHIPVAELPEALAAGFGIP 294
QE ++H QD G+Q GP +A +LP + P+ + +A + A A G +
Sbjct: 562 QESMEHGDCQDGATGSQSGPGDSAYGVRRDLPPASASRSVPIPLLLASVAAAFALGASVS 621
Query: 295 AILM 298
+L+
Sbjct: 622 GLLV 625
>gi|215422370 solute carrier family 10, member 3 isoform 1 [Homo
sapiens]
Length = 477
Score = 29.3 bits (64), Expect = 6.1
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 298 MLGRFLFPGGIFHFHNQKPFSLPRGLVLGLQGGCHSPG 335
+LG+FL ++ F K F LP+ L LGL C SPG
Sbjct: 230 LLGQFLVMP-LYAFLMAKVFMLPKALALGLIITCSSPG 266
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.141 0.467
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,787,425
Number of Sequences: 37866
Number of extensions: 988552
Number of successful extensions: 3275
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 3208
Number of HSP's gapped (non-prelim): 74
length of query: 377
length of database: 18,247,518
effective HSP length: 104
effective length of query: 273
effective length of database: 14,309,454
effective search space: 3906480942
effective search space used: 3906480942
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.