Guide to the Human Genome
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Name: LOC100288997 Sequence: fasta or formatted (923aa) NCBI GI: 239750922
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {923aa} PREDICTED: hypothetical protein XP_002343437
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         74           3
 C cysteine            3.0         28           2
 D aspartate           2.6         24           1
 E glutamate           3.1         29           1
 F phenylalanine       3.5         32           2
 G glycine             7.2         66           2
 H histidine           4.0         37           1
 I isoleucine          2.2         20           1
 K lysine              3.3         30           2
 L leucine             9.6         89           3
 M methionine          2.3         21           1
 N asparagine          2.1         19           1
 P proline             9.9         91           3
 Q glutamine           6.0         55           2
 R arginine            8.1         75           3
 S serine             11.9        110           6
 T threonine           5.3         49           3
 V valine              4.2         39           1
 W tryptophan          2.3         21           1
 Y tyrosine            1.5         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288997          1.000   PREDICTED: hypothetical protein XP_002343437 
ANTXR1                0.009   anthrax toxin receptor 1 isoform 1 precursor 
ATOH8                 0.007   atonal homolog 8 
LOC440829             0.007   PREDICTED: transmembrane protein 46-like 
ARID1A                0.006   AT rich interactive domain 1A isoform a 
ARID1A                0.006   AT rich interactive domain 1A isoform b 
PCLO                  0.006   piccolo isoform 2 
PCLO                  0.006   piccolo isoform 1 
LOC100289242          0.006   PREDICTED: hypothetical protein XP_002342243 
PRB3                  0.006   proline-rich protein BstNI subfamily 3 precursor [H...
ADAM19                0.005   ADAM metallopeptidase domain 19 preproprotein 
TNRC6B                0.005   trinucleotide repeat containing 6B isoform 3 
PRB1                  0.005   proline-rich protein BstNI subfamily 1 isoform 1 pre...
CSF1                  0.005   colony stimulating factor 1 isoform a precursor [Hom...
CSF1                  0.005   colony stimulating factor 1 isoform b precursor [Hom...
CSF1                  0.005   colony stimulating factor 1 isoform a precursor [Hom...
LOC399829             0.005   PREDICTED: FLJ43861 protein 
FAM22E                0.005   PREDICTED: hypothetical protein isoform 1 
FAM22E                0.005   PREDICTED: hypothetical protein 
FAM22B                0.005   PREDICTED: hypothetical protein isoform 1 
LOC100293029          0.005   PREDICTED: similar to zinc finger protein 30 
LOC100290062          0.005   PREDICTED: hypothetical protein XP_002346980 
LOC100289678          0.005   PREDICTED: hypothetical protein XP_002342831 
LOC100289678          0.005   PREDICTED: similar to zinc finger protein 30 
SYNPO                 0.005   synaptopodin isoform A 
DUX5                  0.005   double homeobox, 5 
ZNF787                0.005   zinc finger protein 787 
LOC728317             0.005   PREDICTED: hypothetical protein 
LOC728317             0.005   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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