Search of human proteins with 239750855

Search of human proteins with 239750855

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239750855 PREDICTED: similar to rCG58239 [Homo sapiens]
         (156 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756309 PREDICTED: similar to rCG58239 [Homo sapiens]            311   2e-85
gi|239750855 PREDICTED: similar to rCG58239 [Homo sapiens]            311   2e-85
gi|239745218 PREDICTED: hypothetical protein XP_002343390 [Homo ...   311   2e-85
gi|8394499 ubiquitin associated protein 1 [Homo sapiens]               92   2e-19
gi|169215201 PREDICTED: similar to Ubiquitin associated and SH3 ...    34   0.057
gi|49640014 ubiquitin associated and SH3 domain containing, A sh...    34   0.057
gi|9507221 ubiquitin associated and SH3 domain containing, A lon...    34   0.057
gi|11496882 ELK4 protein isoform b [Homo sapiens]                      31   0.37 
gi|41872448 ELK4 protein isoform a [Homo sapiens]                      31   0.37 
gi|239049118 linker for activation of T cells isoform d [Homo sa...    28   4.1  
gi|5453844 TAF6-like RNA polymerase II [Homo sapiens]                  28   4.1  
gi|16554564 caspase recruitment domain family, member 6 [Homo sa...    28   4.1  
gi|166706868 synaptopodin 2-like isoform a [Homo sapiens]              28   4.1  
gi|119120918 coiled-coil domain containing 64 [Homo sapiens]           27   5.4  
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa...    27   5.4  
gi|35493713 vacuolar protein sorting 13B isoform 5 [Homo sapiens]      27   9.2  
gi|35493701 vacuolar protein sorting 13B isoform 1 [Homo sapiens]      27   9.2  
gi|35493725 vacuolar protein sorting 13B isoform 3 [Homo sapiens]      27   9.2  
gi|23510413 sorting nexin 26 [Homo sapiens]                            27   9.2  

>gi|239756309 PREDICTED: similar to rCG58239 [Homo sapiens]
          Length = 156

 Score =  311 bits (796), Expect = 2e-85
 Identities = 156/156 (100%), Positives = 156/156 (100%)

Query: 1   MSSLSVFQSLSPYTCLPPLGGAPQPLNPHKSHPDTAADLLSALSQEEQDLIGPVVALGYP 60
           MSSLSVFQSLSPYTCLPPLGGAPQPLNPHKSHPDTAADLLSALSQEEQDLIGPVVALGYP
Sbjct: 1   MSSLSVFQSLSPYTCLPPLGGAPQPLNPHKSHPDTAADLLSALSQEEQDLIGPVVALGYP 60

Query: 61  LRRAIIALQKTGRQSLSQFLSYLSACDRLLRQGYEEGLVDEAMEMFQFSESQAGEFLRLW 120
           LRRAIIALQKTGRQSLSQFLSYLSACDRLLRQGYEEGLVDEAMEMFQFSESQAGEFLRLW
Sbjct: 61  LRRAIIALQKTGRQSLSQFLSYLSACDRLLRQGYEEGLVDEAMEMFQFSESQAGEFLRLW 120

Query: 121 EQFSDMGFQQDRIKEVLLVHGNRREQALEELVACAQ 156
           EQFSDMGFQQDRIKEVLLVHGNRREQALEELVACAQ
Sbjct: 121 EQFSDMGFQQDRIKEVLLVHGNRREQALEELVACAQ 156


>gi|239750855 PREDICTED: similar to rCG58239 [Homo sapiens]
          Length = 156

 Score =  311 bits (796), Expect = 2e-85
 Identities = 156/156 (100%), Positives = 156/156 (100%)

Query: 1   MSSLSVFQSLSPYTCLPPLGGAPQPLNPHKSHPDTAADLLSALSQEEQDLIGPVVALGYP 60
           MSSLSVFQSLSPYTCLPPLGGAPQPLNPHKSHPDTAADLLSALSQEEQDLIGPVVALGYP
Sbjct: 1   MSSLSVFQSLSPYTCLPPLGGAPQPLNPHKSHPDTAADLLSALSQEEQDLIGPVVALGYP 60

Query: 61  LRRAIIALQKTGRQSLSQFLSYLSACDRLLRQGYEEGLVDEAMEMFQFSESQAGEFLRLW 120
           LRRAIIALQKTGRQSLSQFLSYLSACDRLLRQGYEEGLVDEAMEMFQFSESQAGEFLRLW
Sbjct: 61  LRRAIIALQKTGRQSLSQFLSYLSACDRLLRQGYEEGLVDEAMEMFQFSESQAGEFLRLW 120

Query: 121 EQFSDMGFQQDRIKEVLLVHGNRREQALEELVACAQ 156
           EQFSDMGFQQDRIKEVLLVHGNRREQALEELVACAQ
Sbjct: 121 EQFSDMGFQQDRIKEVLLVHGNRREQALEELVACAQ 156


>gi|239745218 PREDICTED: hypothetical protein XP_002343390 [Homo
           sapiens]
          Length = 156

 Score =  311 bits (796), Expect = 2e-85
 Identities = 156/156 (100%), Positives = 156/156 (100%)

Query: 1   MSSLSVFQSLSPYTCLPPLGGAPQPLNPHKSHPDTAADLLSALSQEEQDLIGPVVALGYP 60
           MSSLSVFQSLSPYTCLPPLGGAPQPLNPHKSHPDTAADLLSALSQEEQDLIGPVVALGYP
Sbjct: 1   MSSLSVFQSLSPYTCLPPLGGAPQPLNPHKSHPDTAADLLSALSQEEQDLIGPVVALGYP 60

Query: 61  LRRAIIALQKTGRQSLSQFLSYLSACDRLLRQGYEEGLVDEAMEMFQFSESQAGEFLRLW 120
           LRRAIIALQKTGRQSLSQFLSYLSACDRLLRQGYEEGLVDEAMEMFQFSESQAGEFLRLW
Sbjct: 61  LRRAIIALQKTGRQSLSQFLSYLSACDRLLRQGYEEGLVDEAMEMFQFSESQAGEFLRLW 120

Query: 121 EQFSDMGFQQDRIKEVLLVHGNRREQALEELVACAQ 156
           EQFSDMGFQQDRIKEVLLVHGNRREQALEELVACAQ
Sbjct: 121 EQFSDMGFQQDRIKEVLLVHGNRREQALEELVACAQ 156


>gi|8394499 ubiquitin associated protein 1 [Homo sapiens]
          Length = 502

 Score = 91.7 bits (226), Expect = 2e-19
 Identities = 60/161 (37%), Positives = 88/161 (54%), Gaps = 7/161 (4%)

Query: 1   MSSLSVFQSLSPYTCLPPLGGAPQPLN------PHKSHPDTAADLLSALSQEEQDLIGPV 54
           M SLSV    +  +  P  G    P N      P+      A   L  LS  E+  +  V
Sbjct: 340 MPSLSVLSVCTEESSPPNTGPTVTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETV 399

Query: 55  VALGYPLRRAIIALQKTGRQSLSQFLSYLSACDRLLRQGYEEGLVDEAMEMFQFSESQAG 114
           V +GY     + A++K G +++ Q L YL A  +L  +G++  LV+EA+EM Q SE +  
Sbjct: 400 VNMGYSYECVLRAMKKKG-ENIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMM 458

Query: 115 EFLRLWEQFSDMGFQQDRIKEVLLVHGNRREQALEELVACA 155
           EFL+L  +F +MGF+   IKEVLL+H N ++ ALE+L+A A
Sbjct: 459 EFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMARA 499


>gi|169215201 PREDICTED: similar to Ubiquitin associated and SH3
          domain containing, A [Homo sapiens]
          Length = 122

 Score = 33.9 bits (76), Expect = 0.057
 Identities = 14/40 (35%), Positives = 27/40 (67%)

Query: 44 SQEEQDLIGPVVALGYPLRRAIIALQKTGRQSLSQFLSYL 83
          S+    L+ P++A+G+P+  A+ AL  TGR++  + L++L
Sbjct: 18 SRSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWL 57


>gi|49640014 ubiquitin associated and SH3 domain containing, A
          short form [Homo sapiens]
          Length = 623

 Score = 33.9 bits (76), Expect = 0.057
 Identities = 14/40 (35%), Positives = 27/40 (67%)

Query: 44 SQEEQDLIGPVVALGYPLRRAIIALQKTGRQSLSQFLSYL 83
          S+    L+ P++A+G+P+  A+ AL  TGR++  + L++L
Sbjct: 18 SRSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWL 57


>gi|9507221 ubiquitin associated and SH3 domain containing, A long
          form [Homo sapiens]
          Length = 661

 Score = 33.9 bits (76), Expect = 0.057
 Identities = 14/40 (35%), Positives = 27/40 (67%)

Query: 44 SQEEQDLIGPVVALGYPLRRAIIALQKTGRQSLSQFLSYL 83
          S+    L+ P++A+G+P+  A+ AL  TGR++  + L++L
Sbjct: 18 SRSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWL 57


>gi|11496882 ELK4 protein isoform b [Homo sapiens]
          Length = 405

 Score = 31.2 bits (69), Expect = 0.37
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 4   LSVFQSLSPYTCLPPLGGAPQ-PLNPHKSHPDTAADLLSALSQ 45
           ++ F +  P + +PPL   P+ P  P  SHPD   D+ S  SQ
Sbjct: 246 MTAFATTPPISSIPPLQEPPRTPSPPLSSHPDIDTDIDSVASQ 288


>gi|41872448 ELK4 protein isoform a [Homo sapiens]
          Length = 431

 Score = 31.2 bits (69), Expect = 0.37
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 4   LSVFQSLSPYTCLPPLGGAPQ-PLNPHKSHPDTAADLLSALSQ 45
           ++ F +  P + +PPL   P+ P  P  SHPD   D+ S  SQ
Sbjct: 246 MTAFATTPPISSIPPLQEPPRTPSPPLSSHPDIDTDIDSVASQ 288


>gi|239049118 linker for activation of T cells isoform d [Homo
          sapiens]
          Length = 269

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 7/55 (12%)

Query: 16 LPPLGGAPQPLNPHKSHPDTAADLLSALSQEEQDLIGPVV--ALGYPLRRAIIAL 68
          +P LGGA +PL P       AA LL A  Q E+ ++ P V   L  P+   ++AL
Sbjct: 12 VPVLGGASRPLGPR-----GAASLLRAPLQMEEAILVPCVLGLLLLPILAMLMAL 61


>gi|5453844 TAF6-like RNA polymerase II [Homo sapiens]
          Length = 622

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 16/39 (41%), Positives = 20/39 (51%)

Query: 13  YTCLPPLGGAPQPLNPHKSHPDTAADLLSALSQEEQDLI 51
           Y  L PL  +  PLN H +  D AA LLS +     DL+
Sbjct: 244 YCVLEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLV 282


>gi|16554564 caspase recruitment domain family, member 6 [Homo
          sapiens]
          Length = 1037

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 33 PDTAADLLSA---LSQEEQDLIGPVVALGYPLRRAIIALQKTGRQSLSQFLSYL 83
          PD+  D L++   +S+EE + +  V  L    R+ +I +QK G  +   FL  L
Sbjct: 26 PDSILDTLTSRRLISEEEYETLENVTDLLKKSRKLLILVQKKGEATCQHFLKCL 79


>gi|166706868 synaptopodin 2-like isoform a [Homo sapiens]
          Length = 977

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 4   LSVFQSLSPYTCLPPLGGAPQPLNPH--KSHPDTAA 37
           L V   LSP +  PP    PQPL P   +S PD+ A
Sbjct: 101 LQVLSPLSPLSPEPPGAPVPQPLQPGSLRSPPDSEA 136


>gi|119120918 coiled-coil domain containing 64 [Homo sapiens]
          Length = 573

 Score = 27.3 bits (59), Expect = 5.4
 Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 23/136 (16%)

Query: 20  GGAPQPLNPHKSHPDTAADLLSALSQEEQDLIGPVVALGYPLRRAIIALQKTGRQSLSQF 79
           G  PQP       P    +LLS + Q+E+DL+     L   L +A++   +   +   Q 
Sbjct: 86  GAGPQP------PPSQDPELLSVIRQKEKDLV-----LAARLGKALLERNQDMSRQYEQM 134

Query: 80  LSYLSACDRLLRQGYEEGLVDEAMEMFQFSESQAGEFL-RLWEQFSDMGFQQDRI--KEV 136
              L+  D+L      E L  E  E+ +  E++ GE+  R+ E  SD+   QD +  +++
Sbjct: 135 HKELT--DKL------EHLEQEKHELRRRFENREGEWEGRVSELESDVKQLQDELERQQI 186

Query: 137 LLVHGNR-REQALEEL 151
            L   +R + +A++EL
Sbjct: 187 HLREADREKSRAVQEL 202


>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
            sapiens]
          Length = 2881

 Score = 27.3 bits (59), Expect = 5.4
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 63   RAIIALQKTGRQSLSQFL-SYLSACDRLLRQGYEEGLVDEAMEMFQFSESQAGEFL 117
            RA+  L K    SL ++L +++S C R+ R   +E LVD  + +   +E +A   L
Sbjct: 1870 RAMARLHKKTDDSLEKYLYAFMSMCRRVCRLPSKEELVDPNIFIQPITEERASRTL 1925


>gi|35493713 vacuolar protein sorting 13B isoform 5 [Homo sapiens]
          Length = 4022

 Score = 26.6 bits (57), Expect = 9.2
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 45  QEEQDLIGPVVALGYPLRRAIIALQKTGRQSLSQFLSYLSACDRLLRQGYEEGLVDEAME 104
           Q+ Q L  P+V++G+   +A +  + T  Q  S + S      + +    +EG   EA+ 
Sbjct: 378 QKAQTLKDPIVSIGFYCTKATVTFKLTEMQVESSYYSPQKVKSKEVLCWEQEGTTVEALM 437

Query: 105 MFQ-FSESQAG 114
           M + F + Q G
Sbjct: 438 MGEPFFDCQIG 448


>gi|35493701 vacuolar protein sorting 13B isoform 1 [Homo sapiens]
          Length = 3997

 Score = 26.6 bits (57), Expect = 9.2
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 45  QEEQDLIGPVVALGYPLRRAIIALQKTGRQSLSQFLSYLSACDRLLRQGYEEGLVDEAME 104
           Q+ Q L  P+V++G+   +A +  + T  Q  S + S      + +    +EG   EA+ 
Sbjct: 378 QKAQTLKDPIVSIGFYCTKATVTFKLTEMQVESSYYSPQKVKSKEVLCWEQEGTTVEALM 437

Query: 105 MFQ-FSESQAG 114
           M + F + Q G
Sbjct: 438 MGEPFFDCQIG 448


>gi|35493725 vacuolar protein sorting 13B isoform 3 [Homo sapiens]
          Length = 863

 Score = 26.6 bits (57), Expect = 9.2
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 45  QEEQDLIGPVVALGYPLRRAIIALQKTGRQSLSQFLSYLSACDRLLRQGYEEGLVDEAME 104
           Q+ Q L  P+V++G+   +A +  + T  Q  S + S      + +    +EG   EA+ 
Sbjct: 378 QKAQTLKDPIVSIGFYCTKATVTFKLTEMQVESSYYSPQKVKSKEVLCWEQEGTTVEALM 437

Query: 105 MFQ-FSESQAG 114
           M + F + Q G
Sbjct: 438 MGEPFFDCQIG 448


>gi|23510413 sorting nexin 26 [Homo sapiens]
          Length = 1126

 Score = 26.6 bits (57), Expect = 9.2
 Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 16  LPPLGGAPQPLNPHKSHPDTAADLLSALSQE 46
           LP LGG   P  P  S PDT   L SA S+E
Sbjct: 609 LPWLGGTRAPPQPSGSRPDTVT-LRSAKSEE 638


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,938,148
Number of Sequences: 37866
Number of extensions: 242079
Number of successful extensions: 921
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 912
Number of HSP's gapped (non-prelim): 20
length of query: 156
length of database: 18,247,518
effective HSP length: 94
effective length of query: 62
effective length of database: 14,688,114
effective search space: 910663068
effective search space used: 910663068
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.