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Search of human proteins with 239750593
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750593 PREDICTED: hypothetical protein XP_002347442 [Homo
sapiens]
(135 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750593 PREDICTED: hypothetical protein XP_002347442 [Homo ... 280 2e-76
gi|32699048 family with sequence similarity 70, member B [Homo s... 128 2e-30
gi|239757890 PREDICTED: similar to family with sequence similari... 72 2e-13
gi|157388933 hypothetical protein LOC55026 isoform 2 [Homo sapiens] 72 2e-13
gi|157388935 hypothetical protein LOC55026 isoform 3 [Homo sapiens] 72 2e-13
gi|157388931 hypothetical protein LOC55026 isoform 1 [Homo sapiens] 72 2e-13
gi|211971008 acyl-Coenzyme A dehydrogenase family, member 10 iso... 32 0.20
gi|48976061 acyl-Coenzyme A dehydrogenase family, member 10 isof... 32 0.20
gi|239753708 PREDICTED: hypothetical protein [Homo sapiens] 31 0.35
gi|239748268 PREDICTED: hypothetical protein XP_002346625 [Homo ... 31 0.35
gi|239742169 PREDICTED: hypothetical protein XP_002342419 [Homo ... 31 0.35
gi|4507207 sorcin isoform a [Homo sapiens] 29 1.0
gi|125628636 keratin 80 isoform a [Homo sapiens] 29 1.3
gi|125628632 keratin 80 isoform b [Homo sapiens] 29 1.3
gi|4505531 oxysterol binding protein [Homo sapiens] 29 1.3
gi|47271475 SPOC domain containing 1 [Homo sapiens] 29 1.3
gi|21389443 transmembrane protein 125 [Homo sapiens] 29 1.3
gi|17941285 solute carrier family 5 (sodium/glucose cotransporte... 28 1.7
gi|153792780 additional sex combs like 2 [Homo sapiens] 28 1.7
gi|134276943 separase [Homo sapiens] 27 3.8
gi|223633890 hypothetical protein LOC729956 [Homo sapiens] 27 5.0
gi|169208458 PREDICTED: similar to golgi autoantigen, golgin sub... 27 6.6
gi|239745259 PREDICTED: hypothetical protein isoform 2 [Homo sap... 27 6.6
gi|169208122 PREDICTED: hypothetical protein isoform 1 [Homo sap... 27 6.6
gi|4507033 solute carrier family 5 (sodium/glucose cotransporter... 27 6.6
gi|4758024 coilin [Homo sapiens] 27 6.6
gi|154937324 hypothetical protein LOC440295 [Homo sapiens] 27 6.6
gi|206597487 solute carrier family 5 (sodium/glucose cotransport... 26 8.6
gi|206597483 solute carrier family 5 (sodium/glucose cotransport... 26 8.6
gi|20070266 RAS-like GTP-binding protein REM [Homo sapiens] 26 8.6
>gi|239750593 PREDICTED: hypothetical protein XP_002347442 [Homo
sapiens]
Length = 135
Score = 280 bits (717), Expect = 2e-76
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MQPPVPGPLGLLDPAEGLSRRKKTSLWFVGSLLLVSVLIVTVGLAATTRTENVTVGGYYP 60
MQPPVPGPLGLLDPAEGLSRRKKTSLWFVGSLLLVSVLIVTVGLAATTRTENVTVGGYYP
Sbjct: 1 MQPPVPGPLGLLDPAEGLSRRKKTSLWFVGSLLLVSVLIVTVGLAATTRTENVTVGGYYP 60
Query: 61 GIIVSAPGGRPGPGRAGWCVALSGWSPRQLTGLGLKVGRLRSVLVVGRVMAPTDMHFPIP 120
GIIVSAPGGRPGPGRAGWCVALSGWSPRQLTGLGLKVGRLRSVLVVGRVMAPTDMHFPIP
Sbjct: 61 GIIVSAPGGRPGPGRAGWCVALSGWSPRQLTGLGLKVGRLRSVLVVGRVMAPTDMHFPIP 120
Query: 121 RTWDSGRSKAEGNWG 135
RTWDSGRSKAEGNWG
Sbjct: 121 RTWDSGRSKAEGNWG 135
>gi|32699048 family with sequence similarity 70, member B [Homo
sapiens]
Length = 326
Score = 128 bits (321), Expect = 2e-30
Identities = 63/64 (98%), Positives = 64/64 (100%)
Query: 1 MQPPVPGPLGLLDPAEGLSRRKKTSLWFVGSLLLVSVLIVTVGLAATTRTENVTVGGYYP 60
MQPPVPGPLGLLDPAEGLSRRKKTSLWFVGSLLLVSVLIVTVGLAATTRTENVTVGGYYP
Sbjct: 1 MQPPVPGPLGLLDPAEGLSRRKKTSLWFVGSLLLVSVLIVTVGLAATTRTENVTVGGYYP 60
Query: 61 GIIV 64
GII+
Sbjct: 61 GIIL 64
>gi|239757890 PREDICTED: similar to family with sequence
similarity 70, member A [Homo sapiens]
Length = 377
Score = 71.6 bits (174), Expect = 2e-13
Identities = 34/56 (60%), Positives = 45/56 (80%)
Query: 9 LGLLDPAEGLSRRKKTSLWFVGSLLLVSVLIVTVGLAATTRTENVTVGGYYPGIIV 64
+ L D +RRK+ S++ +LL+VSVLI+TVGLAATTRT+NVTVGGYYPG+I+
Sbjct: 13 MSLPDSMGAFNRRKRNSIYVTVTLLIVSVLILTVGLAATTRTQNVTVGGYYPGVIL 68
>gi|157388933 hypothetical protein LOC55026 isoform 2 [Homo
sapiens]
Length = 325
Score = 71.6 bits (174), Expect = 2e-13
Identities = 34/56 (60%), Positives = 45/56 (80%)
Query: 9 LGLLDPAEGLSRRKKTSLWFVGSLLLVSVLIVTVGLAATTRTENVTVGGYYPGIIV 64
+ L D +RRK+ S++ +LL+VSVLI+TVGLAATTRT+NVTVGGYYPG+I+
Sbjct: 13 MSLPDSMGAFNRRKRNSIYVTVTLLIVSVLILTVGLAATTRTQNVTVGGYYPGVIL 68
>gi|157388935 hypothetical protein LOC55026 isoform 3 [Homo
sapiens]
Length = 241
Score = 71.6 bits (174), Expect = 2e-13
Identities = 34/56 (60%), Positives = 45/56 (80%)
Query: 9 LGLLDPAEGLSRRKKTSLWFVGSLLLVSVLIVTVGLAATTRTENVTVGGYYPGIIV 64
+ L D +RRK+ S++ +LL+VSVLI+TVGLAATTRT+NVTVGGYYPG+I+
Sbjct: 13 MSLPDSMGAFNRRKRNSIYVTVTLLIVSVLILTVGLAATTRTQNVTVGGYYPGVIL 68
>gi|157388931 hypothetical protein LOC55026 isoform 1 [Homo
sapiens]
Length = 349
Score = 71.6 bits (174), Expect = 2e-13
Identities = 34/56 (60%), Positives = 45/56 (80%)
Query: 9 LGLLDPAEGLSRRKKTSLWFVGSLLLVSVLIVTVGLAATTRTENVTVGGYYPGIIV 64
+ L D +RRK+ S++ +LL+VSVLI+TVGLAATTRT+NVTVGGYYPG+I+
Sbjct: 13 MSLPDSMGAFNRRKRNSIYVTVTLLIVSVLILTVGLAATTRTQNVTVGGYYPGVIL 68
>gi|211971008 acyl-Coenzyme A dehydrogenase family, member 10
isoform a [Homo sapiens]
Length = 1090
Score = 31.6 bits (70), Expect = 0.20
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 51 ENVTVGGYYPGIIVSAPGGRPGPGRAGWCVALSGWSPRQLTGLGLKVGRLRSVLVVGR 108
EN+ +G PG GR GPGR C+ L G+S R L L R++S L G+
Sbjct: 928 ENMVLG---PGRGFEIAQGRLGPGRIHHCMRLIGFSER---ALALMKARVKSRLAFGK 979
>gi|48976061 acyl-Coenzyme A dehydrogenase family, member 10 isoform
b [Homo sapiens]
Length = 1059
Score = 31.6 bits (70), Expect = 0.20
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 51 ENVTVGGYYPGIIVSAPGGRPGPGRAGWCVALSGWSPRQLTGLGLKVGRLRSVLVVGR 108
EN+ +G PG GR GPGR C+ L G+S R L L R++S L G+
Sbjct: 897 ENMVLG---PGRGFEIAQGRLGPGRIHHCMRLIGFSER---ALALMKARVKSRLAFGK 948
>gi|239753708 PREDICTED: hypothetical protein [Homo sapiens]
Length = 128
Score = 30.8 bits (68), Expect = 0.35
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 71 PGPGRAGWCVALSGWSPRQLTGLGLKVGRLRSVLVVGRV 109
P GRAGW L WS + LG GRL + GR+
Sbjct: 84 PWKGRAGWGRRLRNWSAAEEAALGRGRGRLAKWIGCGRL 122
>gi|239748268 PREDICTED: hypothetical protein XP_002346625 [Homo
sapiens]
Length = 128
Score = 30.8 bits (68), Expect = 0.35
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 71 PGPGRAGWCVALSGWSPRQLTGLGLKVGRLRSVLVVGRV 109
P GRAGW L WS + LG GRL + GR+
Sbjct: 84 PWKGRAGWGRRLRNWSAAEEAALGRGRGRLAKWIGCGRL 122
>gi|239742169 PREDICTED: hypothetical protein XP_002342419 [Homo
sapiens]
Length = 128
Score = 30.8 bits (68), Expect = 0.35
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 71 PGPGRAGWCVALSGWSPRQLTGLGLKVGRLRSVLVVGRV 109
P GRAGW L WS + LG GRL + GR+
Sbjct: 84 PWKGRAGWGRRLRNWSAAEEAALGRGRGRLAKWIGCGRL 122
>gi|4507207 sorcin isoform a [Homo sapiens]
Length = 198
Score = 29.3 bits (64), Expect = 1.0
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 56 GGYYPGIIVSAPGGRPGPGRA-----GWCVALSG 84
GGYYPG APGG PG+ G+ A++G
Sbjct: 11 GGYYPGGYGGAPGGPAFPGQTQDPLYGYFAAVAG 44
>gi|125628636 keratin 80 isoform a [Homo sapiens]
Length = 452
Score = 28.9 bits (63), Expect = 1.3
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 67 PGGRPGPGRAGW--CVALS-GWSPRQLTGLGLKVGRLRSVLVVGRVMAPTDM 115
P G P PG +GW C A G+S R LTG G + V V ++ P D+
Sbjct: 20 PVGSPRPGTSGWDSCRAPGPGFSSRSLTGC-WSAGTISKVTVNPGLLVPLDV 70
>gi|125628632 keratin 80 isoform b [Homo sapiens]
Length = 422
Score = 28.9 bits (63), Expect = 1.3
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 67 PGGRPGPGRAGW--CVALS-GWSPRQLTGLGLKVGRLRSVLVVGRVMAPTDM 115
P G P PG +GW C A G+S R LTG G + V V ++ P D+
Sbjct: 20 PVGSPRPGTSGWDSCRAPGPGFSSRSLTGC-WSAGTISKVTVNPGLLVPLDV 70
>gi|4505531 oxysterol binding protein [Homo sapiens]
Length = 807
Score = 28.9 bits (63), Expect = 1.3
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 57 GYYPGIIVSAPGGRPGPGRAGWCVALSGWSPRQLTG 92
G G +V+A G PGPG G VA +G +P TG
Sbjct: 44 GAASGTVVAAAAGGPGPGAGG--VAAAGPAPAPPTG 77
>gi|47271475 SPOC domain containing 1 [Homo sapiens]
Length = 1216
Score = 28.9 bits (63), Expect = 1.3
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 11/88 (12%)
Query: 51 ENVTVGGYYPGIIVSAPGGRPGPG-RAG------WCVALSGWSPRQLTGLGLKVGRLRSV 103
+N+ PG+ PG GPG RAG AL G S R ++ G L +
Sbjct: 27 QNMEGASSMPGLSPDGPGASSGPGVRAGSRRKIPRKEALRGGSSRAAGAAEVRPGVLELL 86
Query: 104 LVV---GRVMAPTDMHFPIPRTWDSGRS 128
VV G ++AP +H +P GR+
Sbjct: 87 AVVQSRGSMLAP-GLHMQLPSVPTQGRA 113
>gi|21389443 transmembrane protein 125 [Homo sapiens]
Length = 219
Score = 28.9 bits (63), Expect = 1.3
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 11/56 (19%)
Query: 29 VGSLLLVSVLIVTVGLAATTRTENVTVGGYYPGIIVSAPGGRPGPGRAGWCVALSG 84
+GSLLL+ +L+ VG V G+ P I ++ P G G G ++SG
Sbjct: 157 LGSLLLLGLLLYQVG-----------VSGHCPSICMATPSTHSGHGGHGSIFSISG 201
>gi|17941285 solute carrier family 5 (sodium/glucose
cotransporter), member 11 [Homo sapiens]
Length = 675
Score = 28.5 bits (62), Expect = 1.7
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 2 QPPVPGPLGLLDPAEGLSRRKKTSLWFVGSLLLVSVLIVTVGLAATTRTENVTVGGYY 59
QPP PL P +GL + L+L + ++ VGL +T +T+ TV GY+
Sbjct: 9 QPPQLDPLDAF-PQKGLEPGD------IAVLVLYFLFVLAVGLWSTVKTKRDTVKGYF 59
>gi|153792780 additional sex combs like 2 [Homo sapiens]
Length = 1435
Score = 28.5 bits (62), Expect = 1.7
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 45 AATTRTENVTVGGYYPGIIVSAPGGRPGPGRAGWCVALSGWSP 87
AA +VGG PG PGG GPG G G SP
Sbjct: 676 AAAAAAAAASVGGTIPG---PGPGGGQGPGEGGEGQTARGGSP 715
>gi|134276943 separase [Homo sapiens]
Length = 2120
Score = 27.3 bits (59), Expect = 3.8
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 31 SLLLVSVLIVTVGLAATTRTENVTVGGYYPGIIVSAPGGRP---------GPGR---AGW 78
SLLL+ L GL+ T + G+ P +I S PG P G GR A
Sbjct: 1267 SLLLIWALTKLGGLSCCTTQLFASSWGWQPPLIKSVPGSEPSKTQGQKRSGRGRQKLASA 1326
Query: 79 CVALSGWSPRQLTGLGL 95
+ L+ S + L G GL
Sbjct: 1327 PLRLNNTSQKGLEGRGL 1343
>gi|223633890 hypothetical protein LOC729956 [Homo sapiens]
Length = 538
Score = 26.9 bits (58), Expect = 5.0
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 68 GGRPGPGRAGW 78
GG PGPG+AGW
Sbjct: 154 GGGPGPGQAGW 164
>gi|169208458 PREDICTED: similar to golgi autoantigen, golgin
subfamily a-like [Homo sapiens]
Length = 432
Score = 26.6 bits (57), Expect = 6.6
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 65 SAPGGRPGPG----RAGWCVALSGWSPRQLTGL 93
SA RP PG + W +GW+P++ GL
Sbjct: 365 SAAAARPVPGAPVPQGAWMCGQAGWTPQEHPGL 397
>gi|239745259 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 432
Score = 26.6 bits (57), Expect = 6.6
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 65 SAPGGRPGPG----RAGWCVALSGWSPRQLTGL 93
SA RP PG + W +GW+P++ GL
Sbjct: 365 SAAAARPVPGAPVPQGAWMCGQAGWTPQEHPGL 397
>gi|169208122 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 479
Score = 26.6 bits (57), Expect = 6.6
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 65 SAPGGRPGPG----RAGWCVALSGWSPRQLTGL 93
SA RP PG + W +GW+P++ GL
Sbjct: 412 SAAAARPVPGAPVPQGAWMCGQAGWTPQEHPGL 444
>gi|4507033 solute carrier family 5 (sodium/glucose
cotransporter), member 2 [Homo sapiens]
Length = 672
Score = 26.6 bits (57), Expect = 6.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 37 VLIVTVGLAATTRTENVTVGGYY 59
+L++ VGL + RT TVGGY+
Sbjct: 34 LLVIGVGLWSMCRTNRGTVGGYF 56
>gi|4758024 coilin [Homo sapiens]
Length = 576
Score = 26.6 bits (57), Expect = 6.6
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 57 GYYPGIIVSAPGGRPGPGRAGWCVALSGWSPRQLTGLGLKVGRLRSV 103
G+ + + A GRPGPG + +GW G G G SV
Sbjct: 339 GFLKTVGLFAGRGRPGPGLSSQTAGAAGWRRSGSNGGGQAPGASPSV 385
>gi|154937324 hypothetical protein LOC440295 [Homo sapiens]
Length = 432
Score = 26.6 bits (57), Expect = 6.6
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 65 SAPGGRPGPG----RAGWCVALSGWSPRQLTGL 93
SA RP PG + W +GW+P++ GL
Sbjct: 365 SAAAARPVPGAPVPQGAWMCGQAGWTPQEHPGL 397
>gi|206597487 solute carrier family 5 (sodium/glucose
cotransporter), member 9 isoform 1 [Homo sapiens]
Length = 706
Score = 26.2 bits (56), Expect = 8.6
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 14 PAEGLSRRKKTSLWFVGSLLLVSVLIVTVGLAATTRTENVTVGGYY 59
P L R + + +++ V ++ VG+ ++ R T+GGY+
Sbjct: 23 PHIALDSRVGLHAYDISVVVIYFVFVIAVGIWSSIRASRGTIGGYF 68
>gi|206597483 solute carrier family 5 (sodium/glucose
cotransporter), member 9 isoform 2 [Homo sapiens]
Length = 681
Score = 26.2 bits (56), Expect = 8.6
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 14 PAEGLSRRKKTSLWFVGSLLLVSVLIVTVGLAATTRTENVTVGGYY 59
P L R + + +++ V ++ VG+ ++ R T+GGY+
Sbjct: 23 PHIALDSRVGLHAYDISVVVIYFVFVIAVGIWSSIRASRGTIGGYF 68
>gi|20070266 RAS-like GTP-binding protein REM [Homo sapiens]
Length = 298
Score = 26.2 bits (56), Expect = 8.6
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 112 PTDMHFPIPRTWDSGRSKAEGNW 134
PT P P W S S +EG+W
Sbjct: 55 PTQKPSPAPDDWSSESSDSEGSW 77
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.140 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,481,647
Number of Sequences: 37866
Number of extensions: 297470
Number of successful extensions: 866
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 844
Number of HSP's gapped (non-prelim): 32
length of query: 135
length of database: 18,247,518
effective HSP length: 91
effective length of query: 44
effective length of database: 14,801,712
effective search space: 651275328
effective search space used: 651275328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.