Guide to the Human Genome
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Name: LOC642612 Sequence: fasta or formatted (229aa) NCBI GI: 239750141
Description:

PREDICTED: similar to tripartite motif protein 39

Not currently referenced in the text

Other entries for this name:
alt prot {229aa} PREDICTED: similar to tripartite motif protein 39
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.1          7           2
 C cysteine            1.3          3           1
 D aspartate           5.2         12           1
 E glutamate           4.8         11           2
 F phenylalanine       7.9         18           2
 G glycine             6.1         14           1
 H histidine           2.6          6           1
 I isoleucine          3.5          8           1
 K lysine              3.5          8           1
 L leucine            10.0         23           3
 M methionine          3.1          7           1
 N asparagine          6.6         15           1
 P proline             4.8         11           1
 Q glutamine           1.7          4           1
 R arginine            4.8         11           2
 S serine             11.4         26           2
 T threonine           4.4         10           2
 V valine              8.7         20           1
 W tryptophan          3.9          9           1
 Y tyrosine            2.6          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to tripartite motif protein 39 [... 
LOC642612             0.989   PREDICTED: similar to tripartite motif protein 39 [...
LOC283116             0.750   PREDICTED: similar to ring finger protein 18 isofor...
LOC653192             0.680   PREDICTED: Tripartite motif-containing protein 43-li...
TRIM43                0.680   tripartite motif-containing 43 
LOC100290538          0.454   PREDICTED: hypothetical protein XP_002347266 
LOC100292775          0.368   PREDICTED: similar to hCG2003752 
TRIM77                0.331   PREDICTED: tripartite motif-containing 77 
TRIM77                0.331   PREDICTED: tripartite motif-containing 77 
LOC100289112          0.331   PREDICTED: hypothetical protein XP_002343148 
TRIM77                0.331   tripartite motif-containing 77 
LOC642446             0.309   PREDICTED: tripartite motif-containing protein 64B-...
LOC283116             0.307   PREDICTED: similar to ring finger protein 18 isofor...
LOC283116             0.307   PREDICTED: similar to ring finger protein 18 
LOC283116             0.307   PREDICTED: similar to ring finger protein 18 
TRIM64                0.305   tripartite motif-containing 64 
LOC653111             0.303   PREDICTED: similar to ring finger protein 18 
TRIM49                0.300   ring finger protein 18 
LOC646754             0.298   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.298   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.298   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.298   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.298   PREDICTED: tripartite motif-containing protein 64C-...
LOC646754             0.298   PREDICTED: tripartite motif-containing protein 64C-...
SPRYD5                0.287   SPRY domain containing 5 
LOC729384             0.279   hypothetical protein LOC729384 
LOC100134006          0.279   PREDICTED: similar to ring finger protein 18 isofor...
LOC399939             0.279   PREDICTED: similar to ring finger protein 18 
LOC100131392          0.279   PREDICTED: similar to ring finger protein 18 
LOC399939             0.279   PREDICTED: similar to ring finger protein 18 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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