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Search of human proteins with 239750090
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750090 PREDICTED: hypothetical protein XP_002347290 [Homo
sapiens]
(109 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755599 PREDICTED: hypothetical protein XP_002344618 [Homo ... 222 4e-59
gi|239750090 PREDICTED: hypothetical protein XP_002347290 [Homo ... 222 4e-59
gi|239744399 PREDICTED: hypothetical protein XP_002343154 [Homo ... 222 4e-59
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 45 1e-05
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 38 0.002
gi|239756555 PREDICTED: hypothetical protein XP_002344930 [Homo ... 37 0.003
gi|239751056 PREDICTED: hypothetical protein [Homo sapiens] 37 0.003
gi|239745519 PREDICTED: hypothetical protein XP_002343478 [Homo ... 37 0.003
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 37 0.003
gi|239756547 PREDICTED: hypothetical protein [Homo sapiens] 35 0.010
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens] 35 0.010
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens] 35 0.013
gi|239753673 PREDICTED: hypothetical protein [Homo sapiens] 35 0.017
gi|239748460 PREDICTED: hypothetical protein [Homo sapiens] 35 0.017
gi|239742421 PREDICTED: hypothetical protein XP_002342511 [Homo ... 35 0.017
gi|50083281 KIAA1853 protein [Homo sapiens] 35 0.017
gi|239751929 PREDICTED: hypothetical protein [Homo sapiens] 34 0.022
gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo ... 34 0.022
gi|29171705 melanoma antigen family D, 2 [Homo sapiens] 34 0.022
gi|19387846 melanoma antigen family D, 2 [Homo sapiens] 34 0.022
gi|41350320 melanoma antigen family D, 2 [Homo sapiens] 34 0.022
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 34 0.029
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 34 0.029
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 34 0.029
gi|239756611 PREDICTED: hypothetical protein [Homo sapiens] 33 0.038
gi|239752939 PREDICTED: hypothetical protein [Homo sapiens] 33 0.038
gi|239751099 PREDICTED: hypothetical protein XP_002347699 [Homo ... 33 0.038
gi|239747479 PREDICTED: hypothetical protein XP_002347544 [Homo ... 33 0.038
gi|239745586 PREDICTED: hypothetical protein XP_002344136 [Homo ... 33 0.038
gi|239741351 PREDICTED: hypothetical protein XP_002342181 [Homo ... 33 0.038
>gi|239755599 PREDICTED: hypothetical protein XP_002344618 [Homo
sapiens]
Length = 109
Score = 222 bits (566), Expect = 4e-59
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 1 MWLRMELATLASNSARPGPSFPATRGAASAWRTSVRQPRKAARRPCRWWPRRSRATRSTI 60
MWLRMELATLASNSARPGPSFPATRGAASAWRTSVRQPRKAARRPCRWWPRRSRATRSTI
Sbjct: 1 MWLRMELATLASNSARPGPSFPATRGAASAWRTSVRQPRKAARRPCRWWPRRSRATRSTI 60
Query: 61 SVAASASPAAASRAPGARKRRWKRSSARTSSELSPPPCSCASRRSTSAK 109
SVAASASPAAASRAPGARKRRWKRSSARTSSELSPPPCSCASRRSTSAK
Sbjct: 61 SVAASASPAAASRAPGARKRRWKRSSARTSSELSPPPCSCASRRSTSAK 109
>gi|239750090 PREDICTED: hypothetical protein XP_002347290 [Homo
sapiens]
Length = 109
Score = 222 bits (566), Expect = 4e-59
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 1 MWLRMELATLASNSARPGPSFPATRGAASAWRTSVRQPRKAARRPCRWWPRRSRATRSTI 60
MWLRMELATLASNSARPGPSFPATRGAASAWRTSVRQPRKAARRPCRWWPRRSRATRSTI
Sbjct: 1 MWLRMELATLASNSARPGPSFPATRGAASAWRTSVRQPRKAARRPCRWWPRRSRATRSTI 60
Query: 61 SVAASASPAAASRAPGARKRRWKRSSARTSSELSPPPCSCASRRSTSAK 109
SVAASASPAAASRAPGARKRRWKRSSARTSSELSPPPCSCASRRSTSAK
Sbjct: 61 SVAASASPAAASRAPGARKRRWKRSSARTSSELSPPPCSCASRRSTSAK 109
>gi|239744399 PREDICTED: hypothetical protein XP_002343154 [Homo
sapiens]
Length = 109
Score = 222 bits (566), Expect = 4e-59
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 1 MWLRMELATLASNSARPGPSFPATRGAASAWRTSVRQPRKAARRPCRWWPRRSRATRSTI 60
MWLRMELATLASNSARPGPSFPATRGAASAWRTSVRQPRKAARRPCRWWPRRSRATRSTI
Sbjct: 1 MWLRMELATLASNSARPGPSFPATRGAASAWRTSVRQPRKAARRPCRWWPRRSRATRSTI 60
Query: 61 SVAASASPAAASRAPGARKRRWKRSSARTSSELSPPPCSCASRRSTSAK 109
SVAASASPAAASRAPGARKRRWKRSSARTSSELSPPPCSCASRRSTSAK
Sbjct: 61 SVAASASPAAASRAPGARKRRWKRSSARTSSELSPPPCSCASRRSTSAK 109
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 45.4 bits (106), Expect = 1e-05
Identities = 40/105 (38%), Positives = 51/105 (48%), Gaps = 11/105 (10%)
Query: 12 SNSARPGPSF---PATRGAASAWRTSVRQPRKAARRPCRWWPRRSRATRSTISVAASASP 68
S SAR G S PATRG + + RT R+ R +R P R RRSR+ T + S +P
Sbjct: 554 SRSARRGRSHSRSPATRGRSRS-RTPARRGRSRSRTPAR---RRSRSRTPTRRRSRSRTP 609
Query: 69 A----AASRAPGARKRRWKRSSARTSSELSPPPCSCASRRSTSAK 109
A + SR P R+ R + R S SP S SR T A+
Sbjct: 610 ARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPAR 654
Score = 33.5 bits (75), Expect = 0.038
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 12 SNSARPGPSFPATRGAASAWRTSVRQPRKAARRPCRWWPRRS------RATRSTISVAAS 65
S+S P P A S +P+ +R P R RS +A S S +AS
Sbjct: 1652 SSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSAS 1711
Query: 66 ASPAAASRAPGARKRRWKRSSARTSSELSPPPCSCASRRSTSA 108
+SP SR P R +RS + +S E + S RRS S+
Sbjct: 1712 SSPETRSRTP----PRHRRSPSVSSPEPAEKSRSSRRRRSASS 1750
Score = 32.7 bits (73), Expect = 0.064
Identities = 29/106 (27%), Positives = 41/106 (38%)
Query: 4 RMELATLASNSARPGPSFPATRGAASAWRTSVRQPRKAARRPCRWWPRRSRATRSTISVA 63
R T +S P + +R A R+ Q R +R P R RSR T+
Sbjct: 496 RSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSR 555
Query: 64 ASASPAAASRAPGARKRRWKRSSARTSSELSPPPCSCASRRSTSAK 109
++ + SR+P R R R+ AR S P SR T +
Sbjct: 556 SARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTR 601
Score = 32.0 bits (71), Expect = 0.11
Identities = 21/65 (32%), Positives = 27/65 (41%)
Query: 22 PATRGAASAWRTSVRQPRKAARRPCRWWPRRSRATRSTISVAASASPAAASRAPGARKRR 81
PA R S RT R+ R +R P R RSR + S +PA R+ RR
Sbjct: 640 PARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRR 699
Query: 82 WKRSS 86
+ S
Sbjct: 700 GRSRS 704
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 24 TRGAASAWRTSVRQPRKAARRPCRWWPRRSRATRSTISVAASASP-----AAASRAPGAR 78
+R A+S+ T R P + R P P + +RS+ +++SP + R+P +
Sbjct: 1707 SRSASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPK 1766
Query: 79 KRRWKRSSARTSSE 92
R +RS +R+ E
Sbjct: 1767 PRGLQRSRSRSRRE 1780
Score = 27.7 bits (60), Expect = 2.1
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 11 ASNSARPGPSFPATRGAASAWRTSVRQPRKAARRPCRWWPRRSRATRSTISVAASASPAA 70
A S R PA RG + + RT R+ R +R P R RS +RS S +
Sbjct: 641 ARRSGRSRSRTPARRGRSRS-RTPARRGRSRSRTPAR----RSGRSRSRTPARRGRSRSR 695
Query: 71 ASRAPGARKR---RWKRSSART 89
R +R R R RS +RT
Sbjct: 696 TPRRGRSRSRSLVRRGRSHSRT 717
Score = 27.7 bits (60), Expect = 2.1
Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 13/99 (13%)
Query: 22 PATRGAASAWRTSVRQPRKAARRPCRWWPRRSRATRSTISVAA---------SASPAAAS 72
PA RG + + + R R +R P R RSR R S + S +P
Sbjct: 663 PARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRG 722
Query: 73 RAPGARKRRWK-RSSARTSSELSPPPCS---CASRRSTS 107
R+ + +R+ K R+S R S S P +SRRS S
Sbjct: 723 RSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRS 761
Score = 26.9 bits (58), Expect = 3.5
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 12/110 (10%)
Query: 11 ASNSARPGPSFPA----TRGAASAWRTSVRQPRKA-----ARRPCRWWPRRSR--ATRST 59
A + +P P P R ++S+ + +Q +K RR PRR R +++
Sbjct: 157 AREAKQPAPEPPKPYSLVRESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKKK 216
Query: 60 ISVAASASPAAASRAPGAR-KRRWKRSSARTSSELSPPPCSCASRRSTSA 108
+ S S R+P + KR+ K + S +P P S + RSTSA
Sbjct: 217 KHRSESESKKRKHRSPTPKSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSA 266
Score = 25.8 bits (55), Expect = 7.9
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 21/117 (17%)
Query: 12 SNSARPGPSFPATRGAASAWRTSVRQPRKAARRPCRWWPRRSRATRSTISVAASASPA-- 69
S+ R S P T+ + R+ +PR R R ++R TR +S S +
Sbjct: 1741 SSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRR 1800
Query: 70 ---AASRAPGARKRRW----------KRSSARTSS------ELSPPPCSCASRRSTS 107
+ SR+ R+RR ++ S+RTSS +PP SR TS
Sbjct: 1801 RQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTS 1857
Score = 25.8 bits (55), Expect = 7.9
Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 11/107 (10%)
Query: 4 RMELATLASNSARPGPSFPATRGAASAWRTSVRQPRKAARRPCRWWPRRSRATRSTISVA 63
R E + +S R P T S RTS +++ R RRSR+ IS
Sbjct: 1827 RQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRR 1886
Query: 64 ASASPAAASRAPGARKRRWKRSSA---RTSSELSPPPCSCASRRSTS 107
S S +P +R+R R+S R+ S SP + RRS S
Sbjct: 1887 RSRS----RTSPVSRRRSRSRTSVTRRRSRSRASP----VSRRRSRS 1925
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 38.1 bits (87), Expect = 0.002
Identities = 41/108 (37%), Positives = 42/108 (38%), Gaps = 18/108 (16%)
Query: 8 ATLASNSARPGPSFPATRGAASA-WRTSVRQPRKAARR------PCRWWPRRSRAT---R 57
A A + PG P A SA W R R A RR PCR P R RA R
Sbjct: 60 AASAGSQEHPGAGGPLCFPARSAAWGPPARASRAAGRRAGPAGPPCRA-PGRGRAAATRR 118
Query: 58 STISVAASASPAAASRAPGARKRRWKRSSARTSS---ELSPPPCSCAS 102
S A SPA RA GA SSA T S PPPC S
Sbjct: 119 SPAPGTARGSPAGVERAGGAT----AASSAGTRSVPARRLPPPCGGTS 162
>gi|239756555 PREDICTED: hypothetical protein XP_002344930 [Homo
sapiens]
Length = 345
Score = 37.4 bits (85), Expect = 0.003
Identities = 31/93 (33%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 5 MELATLASNSARPGPSFPATRGAASAWRTSV---RQPRKAARR-----PCRWWPRRSRAT 56
+E A A PGP++ AA+A R+S R P +A +R W RR+R+
Sbjct: 54 LEAPDAADEGAEPGPAWDGAEPAAAARRSSASRGRSPPRARKRSIPPAALMWRVRRARSA 113
Query: 57 --RSTISVAASASPAAASRAPGARKRRWKRSSA 87
R VA S SP AS A A R S +
Sbjct: 114 RLRGVSLVAGSFSPPRASPAAAASCARQNESES 146
>gi|239751056 PREDICTED: hypothetical protein [Homo sapiens]
Length = 345
Score = 37.4 bits (85), Expect = 0.003
Identities = 31/93 (33%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 5 MELATLASNSARPGPSFPATRGAASAWRTSV---RQPRKAARR-----PCRWWPRRSRAT 56
+E A A PGP++ AA+A R+S R P +A +R W RR+R+
Sbjct: 54 LEAPDAADEGAEPGPAWDGAEPAAAARRSSASRGRSPPRARKRSIPPAALMWRVRRARSA 113
Query: 57 --RSTISVAASASPAAASRAPGARKRRWKRSSA 87
R VA S SP AS A A R S +
Sbjct: 114 RLRGVSLVAGSFSPPRASPAAAASCARQNESES 146
>gi|239745519 PREDICTED: hypothetical protein XP_002343478 [Homo
sapiens]
Length = 345
Score = 37.4 bits (85), Expect = 0.003
Identities = 31/93 (33%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 5 MELATLASNSARPGPSFPATRGAASAWRTSV---RQPRKAARR-----PCRWWPRRSRAT 56
+E A A PGP++ AA+A R+S R P +A +R W RR+R+
Sbjct: 54 LEAPDAADEGAEPGPAWDGAEPAAAARRSSASRGRSPPRARKRSIPPAALMWRVRRARSA 113
Query: 57 --RSTISVAASASPAAASRAPGARKRRWKRSSA 87
R VA S SP AS A A R S +
Sbjct: 114 RLRGVSLVAGSFSPPRASPAAAASCARQNESES 146
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 37.4 bits (85), Expect = 0.003
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 8 ATLASNSARPGPSFPATRGAASAWRTSVRQPRKAARRPCRWWPRRSRATRSTISVAASAS 67
A +S+ +P P PA+ + R+ R+P A R RRSR+ RS S
Sbjct: 532 AASSSSGTQPAPPAPASPWDSKKHRSRDRKPGSHASSSAR---RRSRS-RSRSRSTRRRS 587
Query: 68 PAAASRAPGARKRRWKRSSARTSSELSPPPCSCASRRS 105
+ R G+R+ R + R SPPP + +S S
Sbjct: 588 RSTDRRRGGSRRSRSREKRRRRRRSASPPPATSSSSSS 625
>gi|239756547 PREDICTED: hypothetical protein [Homo sapiens]
Length = 240
Score = 35.4 bits (80), Expect = 0.010
Identities = 26/72 (36%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 28 ASAWRTSVRQPRKAARRPCRWWPRRSRATRSTISVAASASPAAASRAPGARKRRWKRS-- 85
AS W T R P AR P RS S + A R G R R W+RS
Sbjct: 25 ASFWATGHRDPPSRARGPPGRPSLRSGPPASGAPKTPTPPNVRAGRGRGPRVRGWRRSEP 84
Query: 86 SARTSSELSPPP 97
+ART+ L P P
Sbjct: 85 AARTAQGLPPEP 96
>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 35.4 bits (80), Expect = 0.010
Identities = 35/106 (33%), Positives = 46/106 (43%), Gaps = 15/106 (14%)
Query: 3 LRMELATLASNSARPG---PSFPATRGAASAWRTSVRQPRKAARRPCRWWPRRSRATRST 59
LR T +RPG FPA PR A RP PRRS A R T
Sbjct: 151 LRPPPGTRPRAKSRPGCRSSPFPARSRTPGEAGPPRGDPRPRAPRPGDH-PRRSPALRET 209
Query: 60 ISVAASASPAAASRAPGARKRRWKRSSAR-TSSELSPPPCSCASRR 104
P+ + +PG +R KR++ + T+ + PPP CA+RR
Sbjct: 210 --------PSLSPPSPG--RRNGKRAAGKGTTPQPQPPPPPCATRR 245
>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
Length = 352
Score = 35.0 bits (79), Expect = 0.013
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 18 GPSFPATRGAASAWRTSVRQPRKAARRPCRWWPRRSRATRSTISVAASASPAA---ASRA 74
GP RGA A S ++ R +R R +R + +R S SAS + AS A
Sbjct: 114 GPQGGRARGAM-AHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTA 172
Query: 75 PGARKRRWKRSSARTSSELSPPPCSCASRRSTSA 108
PGA +R +++ RT S S S +S S+S+
Sbjct: 173 PGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSS 206
>gi|239753673 PREDICTED: hypothetical protein [Homo sapiens]
Length = 380
Score = 34.7 bits (78), Expect = 0.017
Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 11/94 (11%)
Query: 22 PATRGAASAW------RTSVRQPRKAARRPCRWWPRRSRATRSTISVAASASPAAASRAP 75
PA GAA A R +V+ R + P +A ++ + ASP A AP
Sbjct: 125 PARGGAARARLLAVEVRVAVQSERHRHVGAVQLVPAPRQAAQAADTGPRHASPGARRPAP 184
Query: 76 GARKRRWKRSSARTSSELSPPPCSCASRRSTSAK 109
GAR RS R SPPP RRST+ +
Sbjct: 185 GAR-----RSRPRLLRPASPPPRPAPRRRSTAPR 213
>gi|239748460 PREDICTED: hypothetical protein [Homo sapiens]
Length = 272
Score = 34.7 bits (78), Expect = 0.017
Identities = 38/119 (31%), Positives = 44/119 (36%), Gaps = 37/119 (31%)
Query: 21 FPATRGAASAWRTSVRQPRKA-----------ARRPC---RW-WPRRSRATRSTISVA-- 63
FP G WR V R A +R RW W RR+RA + A
Sbjct: 44 FPRRSGRVGGWRAQVAPHRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASR 103
Query: 64 -------ASASPAAASRAPGARKRRWKR------SSARTSSEL-------SPPPCSCAS 102
ASASP AASR P A K A+T+S L +PPP C S
Sbjct: 104 APPPGRPASASPPAASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAPCPS 162
>gi|239742421 PREDICTED: hypothetical protein XP_002342511 [Homo
sapiens]
Length = 272
Score = 34.7 bits (78), Expect = 0.017
Identities = 38/119 (31%), Positives = 44/119 (36%), Gaps = 37/119 (31%)
Query: 21 FPATRGAASAWRTSVRQPRKA-----------ARRPC---RW-WPRRSRATRSTISVA-- 63
FP G WR V R A +R RW W RR+RA + A
Sbjct: 44 FPRRSGRVGGWRAQVAPHRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASR 103
Query: 64 -------ASASPAAASRAPGARKRRWKR------SSARTSSEL-------SPPPCSCAS 102
ASASP AASR P A K A+T+S L +PPP C S
Sbjct: 104 APPPGRPASASPPAASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAPCPS 162
>gi|50083281 KIAA1853 protein [Homo sapiens]
Length = 611
Score = 34.7 bits (78), Expect = 0.017
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 16 RPGPSFPATRGAASAWRTSVRQPRKAARRPCRWWPR---RSRATRSTISVAASASPAAAS 72
RP PS + + S+W +S R A+R R R R R+ T S ++S SP
Sbjct: 521 RPSPSSSGSLSSTSSWYSS-SSSRSASRSYSRSRSRSRSRRRSRTRTSSSSSSRSP---- 575
Query: 73 RAPGARKRRWKRSSARTSSELSPPPCSCASRRSTSAK 109
+PG+R R RS +R+ S S A S++ +
Sbjct: 576 -SPGSRSRSRSRSRSRSRSRSQSRSYSSADSYSSTRR 611
Score = 31.2 bits (69), Expect = 0.19
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 38 PRKAARRPCRWWPRRSR--ATRSTISVAASASPAAA-----SRAPGARKRRWKRSSARTS 90
P A P + R S +TRS+ + S +P A+ SR+ + KR + RS + +S
Sbjct: 378 PSTARSSPMKGCSRSSSYASTRSSSHSSRSPNPRASPRYTQSRSTSSEKRSYSRSPSYSS 437
Query: 91 S--ELSPPPCSCASRRSTS 107
+ SPP S SRRS S
Sbjct: 438 KSGKRSPPSRSSRSRRSPS 456
Score = 31.2 bits (69), Expect = 0.19
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 36 RQPRKAARRPCRWW---PRRSRATRSTISVAASASPAAASRAPG---ARKRRWKRSSART 89
R+ A +RP ++ P S + ST S +S+S +ASR+ +R R +RS RT
Sbjct: 507 RRITSARKRPIPYYRPSPSSSGSLSSTSSWYSSSSSRSASRSYSRSRSRSRSRRRSRTRT 566
Query: 90 ---SSELSPPPCSCASRRSTS 107
SS SP P S + RS S
Sbjct: 567 SSSSSSRSPSPGSRSRSRSRS 587
Score = 28.1 bits (61), Expect = 1.6
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 9/107 (8%)
Query: 12 SNSARPGPSFPATRGAASAWRTSVRQPRKAARRPCRWWPRRSRATRSTISVAASA----- 66
S + R P + +R +S R+ R P +++ R P RS +R + S + +
Sbjct: 407 SPNPRASPRYTQSRSTSSEKRSYSRSPSYSSKSGKRSPPSRSSRSRRSPSYSRYSPSRER 466
Query: 67 ----SPAAASRAPGARKRRWKRSSARTSSELSPPPCSCASRRSTSAK 109
S + + R RR +RS + P +RR TSA+
Sbjct: 467 DPKYSEKDSQQRERERARRRRRSYSPMRKRRRDSPSHLEARRITSAR 513
>gi|239751929 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 34.3 bits (77), Expect = 0.022
Identities = 37/113 (32%), Positives = 46/113 (40%), Gaps = 20/113 (17%)
Query: 4 RMELATLASNSARPGP-SFPATRGAASAWRTSVRQPRKAARRPCRWWPRRSRATRSTISV 62
R++ A L + +ARPGP P TR A A R+S QP + RR R TR
Sbjct: 45 RVDAAALRA-AARPGPLGRPPTR-AGPAQRSSCTQPHR----------RRRRGTRRLPPA 92
Query: 63 AASASPAAASRAPGARKRRWKRSSARTSSEL-------SPPPCSCASRRSTSA 108
A P ++R G + R R S T SP P A R T A
Sbjct: 93 LTPAGPYHSARPGGGARARAARVSPPTPPRSGLDPAVPSPTPAPLARCRQTRA 145
>gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo
sapiens]
Length = 382
Score = 34.3 bits (77), Expect = 0.022
Identities = 37/113 (32%), Positives = 46/113 (40%), Gaps = 20/113 (17%)
Query: 4 RMELATLASNSARPGP-SFPATRGAASAWRTSVRQPRKAARRPCRWWPRRSRATRSTISV 62
R++ A L + +ARPGP P TR A A R+S QP + RR R TR
Sbjct: 45 RVDAAALRA-AARPGPLGRPPTR-AGPAQRSSCTQPHR----------RRRRGTRRLPPA 92
Query: 63 AASASPAAASRAPGARKRRWKRSSARTSSEL-------SPPPCSCASRRSTSA 108
A P ++R G + R R S T SP P A R T A
Sbjct: 93 LTPAGPYHSARPGGGARARAARVSPPTPPRSGLDPAVPSPTPAPLARCRQTRA 145
>gi|29171705 melanoma antigen family D, 2 [Homo sapiens]
Length = 606
Score = 34.3 bits (77), Expect = 0.022
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 39 RKAARRPCRWWPRRSRATRSTISVAASASPAAAS-RAPGARKRRWKRSSARTSSELSP-- 95
R+A+R P +W RR+ TR +AA A A S R+P AR+ + +R +A+ S P
Sbjct: 215 RRASRGPIAFWARRASRTR----LAAWARRALLSLRSPKARRGKARRRAAKLQSSQEPEA 270
Query: 96 PP 97
PP
Sbjct: 271 PP 272
>gi|19387846 melanoma antigen family D, 2 [Homo sapiens]
Length = 606
Score = 34.3 bits (77), Expect = 0.022
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 39 RKAARRPCRWWPRRSRATRSTISVAASASPAAAS-RAPGARKRRWKRSSARTSSELSP-- 95
R+A+R P +W RR+ TR +AA A A S R+P AR+ + +R +A+ S P
Sbjct: 215 RRASRGPIAFWARRASRTR----LAAWARRALLSLRSPKARRGKARRRAAKLQSSQEPEA 270
Query: 96 PP 97
PP
Sbjct: 271 PP 272
>gi|41350320 melanoma antigen family D, 2 [Homo sapiens]
Length = 606
Score = 34.3 bits (77), Expect = 0.022
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 39 RKAARRPCRWWPRRSRATRSTISVAASASPAAAS-RAPGARKRRWKRSSARTSSELSP-- 95
R+A+R P +W RR+ TR +AA A A S R+P AR+ + +R +A+ S P
Sbjct: 215 RRASRGPIAFWARRASRTR----LAAWARRALLSLRSPKARRGKARRRAAKLQSSQEPEA 270
Query: 96 PP 97
PP
Sbjct: 271 PP 272
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 33.9 bits (76), Expect = 0.029
Identities = 34/95 (35%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 17 PGPSFPATRGAASAWRTSVRQPR---KAARRPCRWWPRRSRATRSTISVAASASPAAASR 73
PG PA + A T V PR A RP PR+S ++ S S SPAA R
Sbjct: 169 PGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHS-TTEPSPAARRR 227
Query: 74 --APGARKRRWKRSSARTSSELSPPPCSCASRRST 106
A G +R RS + +++ LS P S S R T
Sbjct: 228 PSAGGGLQRPASRSLSSSATPLSSPARSGPSARGT 262
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 33.9 bits (76), Expect = 0.029
Identities = 34/95 (35%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 17 PGPSFPATRGAASAWRTSVRQPR---KAARRPCRWWPRRSRATRSTISVAASASPAAASR 73
PG PA + A T V PR A RP PR+S ++ S S SPAA R
Sbjct: 169 PGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHS-TTEPSPAARRR 227
Query: 74 --APGARKRRWKRSSARTSSELSPPPCSCASRRST 106
A G +R RS + +++ LS P S S R T
Sbjct: 228 PSAGGGLQRPASRSLSSSATPLSSPARSGPSARGT 262
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 33.9 bits (76), Expect = 0.029
Identities = 34/95 (35%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 17 PGPSFPATRGAASAWRTSVRQPR---KAARRPCRWWPRRSRATRSTISVAASASPAAASR 73
PG PA + A T V PR A RP PR+S ++ S S SPAA R
Sbjct: 160 PGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHS-TTEPSPAARRR 218
Query: 74 --APGARKRRWKRSSARTSSELSPPPCSCASRRST 106
A G +R RS + +++ LS P S S R T
Sbjct: 219 PSAGGGLQRPASRSLSSSATPLSSPARSGPSARGT 253
>gi|239756611 PREDICTED: hypothetical protein [Homo sapiens]
Length = 166
Score = 33.5 bits (75), Expect = 0.038
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 19 PSFPATRGAASAWR---TSVRQPRKAARRPCRWWPRRSRATRSTISVAASA--SPAAASR 73
PS TR +S R T+ R+ + + R RW SR + S S A++ +P+ +
Sbjct: 44 PSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGSSSASTCRGTPSCGAL 103
Query: 74 APGARKRR--WKRSSARTSSELSPPPCSCASRRSTSA 108
P R+RR W ++R S S P SCA RST A
Sbjct: 104 RPTQRRRRITW---TSRCVSRCSSGPPSCA--RSTGA 135
>gi|239752939 PREDICTED: hypothetical protein [Homo sapiens]
Length = 310
Score = 33.5 bits (75), Expect = 0.038
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 23 ATRGAASAWRTSVRQPRKAARRPCRWWPRRSRATRSTISVAASASPAAASRAPGARKRRW 82
A+ G+ S W PR A+ C R S A+RS+ + A S S + ASR P + R
Sbjct: 189 ASAGSGSVW------PRAAS---CL---RASSASRSSSARACSLSRSRASRLPASVARSS 236
Query: 83 KRSSARTSSELSPPPCSCASRRSTS 107
R SS S C C++ S +
Sbjct: 237 PSRRQRRSSSCSSACCRCSNASSVA 261
>gi|239751099 PREDICTED: hypothetical protein XP_002347699 [Homo
sapiens]
Length = 166
Score = 33.5 bits (75), Expect = 0.038
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 19 PSFPATRGAASAWR---TSVRQPRKAARRPCRWWPRRSRATRSTISVAASA--SPAAASR 73
PS TR +S R T+ R+ + + R RW SR + S S A++ +P+ +
Sbjct: 44 PSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGSSSASTCRGTPSCGAL 103
Query: 74 APGARKRR--WKRSSARTSSELSPPPCSCASRRSTSA 108
P R+RR W ++R S S P SCA RST A
Sbjct: 104 RPTQRRRRITW---TSRCVSRCSSGPPSCA--RSTGA 135
>gi|239747479 PREDICTED: hypothetical protein XP_002347544 [Homo
sapiens]
Length = 310
Score = 33.5 bits (75), Expect = 0.038
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 23 ATRGAASAWRTSVRQPRKAARRPCRWWPRRSRATRSTISVAASASPAAASRAPGARKRRW 82
A+ G+ S W PR A+ C R S A+RS+ + A S S + ASR P + R
Sbjct: 189 ASAGSGSVW------PRAAS---CL---RASSASRSSSARACSLSRSRASRLPASVARSS 236
Query: 83 KRSSARTSSELSPPPCSCASRRSTS 107
R SS S C C++ S +
Sbjct: 237 PSRRQRRSSSCSSACCRCSNASSVA 261
>gi|239745586 PREDICTED: hypothetical protein XP_002344136 [Homo
sapiens]
Length = 166
Score = 33.5 bits (75), Expect = 0.038
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 19 PSFPATRGAASAWR---TSVRQPRKAARRPCRWWPRRSRATRSTISVAASA--SPAAASR 73
PS TR +S R T+ R+ + + R RW SR + S S A++ +P+ +
Sbjct: 44 PSGKVTRRLSSTRRLGFTNTRRGKGSIWRSARWRGGHSRHSASGSSSASTCRGTPSCGAL 103
Query: 74 APGARKRR--WKRSSARTSSELSPPPCSCASRRSTSA 108
P R+RR W ++R S S P SCA RST A
Sbjct: 104 RPTQRRRRITW---TSRCVSRCSSGPPSCA--RSTGA 135
>gi|239741351 PREDICTED: hypothetical protein XP_002342181 [Homo
sapiens]
Length = 310
Score = 33.5 bits (75), Expect = 0.038
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 23 ATRGAASAWRTSVRQPRKAARRPCRWWPRRSRATRSTISVAASASPAAASRAPGARKRRW 82
A+ G+ S W PR A+ C R S A+RS+ + A S S + ASR P + R
Sbjct: 189 ASAGSGSVW------PRAAS---CL---RASSASRSSSARACSLSRSRASRLPASVARSS 236
Query: 83 KRSSARTSSELSPPPCSCASRRSTS 107
R SS S C C++ S +
Sbjct: 237 PSRRQRRSSSCSSACCRCSNASSVA 261
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.118 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,536,812
Number of Sequences: 37866
Number of extensions: 174041
Number of successful extensions: 2109
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 241
Number of HSP's that attempted gapping in prelim test: 1819
Number of HSP's gapped (non-prelim): 509
length of query: 109
length of database: 18,247,518
effective HSP length: 79
effective length of query: 30
effective length of database: 15,256,104
effective search space: 457683120
effective search space used: 457683120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.