Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100290462 Sequence: fasta or formatted (115aa) NCBI GI: 239750069
Description:

PREDICTED: hypothetical protein XP_002347286

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         12           2
 C cysteine            0.9          1           1
 D aspartate           0.0          0           0
 E glutamate           4.3          5           2
 F phenylalanine       1.7          2           1
 G glycine             7.0          8           2
 H histidine           1.7          2           1
 I isoleucine          4.3          5           1
 K lysine              5.2          6           1
 L leucine            11.3         13           1
 M methionine          2.6          3           1
 N asparagine          3.5          4           1
 P proline            13.0         15           2
 Q glutamine           0.9          1           1
 R arginine            8.7         10           2
 S serine             11.3         13           2
 T threonine           5.2          6           1
 V valine              1.7          2           1
 W tryptophan          3.5          4           1
 Y tyrosine            2.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347286 
LOC100291562          0.037   PREDICTED: similar to hCG2045708 
LOC100287770          0.037   PREDICTED: similar to hCG2045708 
LOC100287770          0.037   PREDICTED: hypothetical protein XP_002343109 
LOC647716             0.028   PREDICTED: similar to Vac14 homolog 
EIF3F                 0.023   eukaryotic translation initiation factor 3, subunit 5...
SGEF                  0.019   Src homology 3 domain-containing guanine nucleotide...
UBQLN4                0.019   ataxin-1 ubiquitin-like interacting protein 
RTN4                  0.019   reticulon 4 isoform D 
RTN4                  0.019   reticulon 4 isoform A 
NEU4                  0.019   sialidase 4 
SRRM2                 0.019   splicing coactivator subunit SRm300 
PRG4                  0.014   proteoglycan 4 isoform B 
PRG4                  0.014   proteoglycan 4 isoform A 
CELSR3                0.014   cadherin EGF LAG seven-pass G-type receptor 3 [Homo...
AGAP2                 0.014   centaurin, gamma 1 isoform PIKE-L 
MARVELD3              0.014   MARVEL domain containing 3 isoform 1 
MARVELD3              0.014   MARVEL domain containing 3 isoform 2 
EYA2                  0.014   eyes absent 2 isoform a 
EYA2                  0.014   eyes absent 2 isoform b 
EYA2                  0.014   eyes absent 2 isoform a 
EYA2                  0.014   eyes absent 2 isoform a 
LOC100293661          0.014   PREDICTED: hypothetical protein 
LOC100291176          0.014   PREDICTED: hypothetical protein XP_002346954 
LOC100289810          0.014   PREDICTED: hypothetical protein XP_002346828 
LOC100287329          0.014   PREDICTED: hypothetical protein XP_002342661 
LOC100294294          0.014   PREDICTED: hypothetical protein XP_002344096 
LOC100294254          0.014   PREDICTED: hypothetical protein XP_002344068 
LOC100294242          0.014   PREDICTED: hypothetical protein 
LOC100294140          0.014   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press