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Search of human proteins with 239749866
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749866 PREDICTED: similar to succinate dehydrogenase
complex, subunit C [Homo sapiens]
(150 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749866 PREDICTED: similar to succinate dehydrogenase compl... 327 2e-90
gi|239744168 PREDICTED: similar to succinate dehydrogenase compl... 327 2e-90
gi|78711820 succinate dehydrogenase complex, subunit C isoform 2... 290 2e-79
gi|4506863 succinate dehydrogenase complex, subunit C isoform 1 ... 153 6e-38
gi|78711822 succinate dehydrogenase complex, subunit C isoform 3... 74 4e-14
gi|155369255 hypothetical protein LOC642502 [Homo sapiens] 74 4e-14
gi|78711824 succinate dehydrogenase complex, subunit C isoform 4... 39 0.001
gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s... 30 0.76
gi|239756603 PREDICTED: hypothetical protein [Homo sapiens] 29 1.3
gi|217272865 myotubularin related protein 4 [Homo sapiens] 29 1.7
gi|181336739 multiple EGF-like-domains 11 [Homo sapiens] 29 1.7
gi|15042949 PR domain containing 12 [Homo sapiens] 28 3.8
gi|49574498 hypothetical protein LOC118461 isoform 2 [Homo sapiens] 27 5.0
gi|206597543 hypothetical protein LOC118461 isoform 1 [Homo sapi... 27 5.0
gi|153090207 Golgi-localized syntaphilin-related protein isoform... 27 5.0
gi|153090203 Golgi-localized syntaphilin-related protein isoform... 27 5.0
gi|153090201 Golgi-localized syntaphilin-related protein isoform... 27 5.0
gi|153090191 Golgi-localized syntaphilin-related protein isoform... 27 5.0
gi|153090182 Golgi-localized syntaphilin-related protein isoform... 27 5.0
gi|148540145 Golgi-localized syntaphilin-related protein isoform... 27 5.0
gi|153090205 Golgi-localized syntaphilin-related protein isoform... 27 5.0
gi|153090199 Golgi-localized syntaphilin-related protein isoform... 27 5.0
gi|153090197 Golgi-localized syntaphilin-related protein isoform... 27 5.0
gi|153090195 Golgi-localized syntaphilin-related protein isoform... 27 5.0
gi|153090187 Golgi-localized syntaphilin-related protein isoform... 27 5.0
gi|153090185 Golgi-localized syntaphilin-related protein isoform... 27 5.0
gi|38201702 telomerase reverse transcriptase isoform 2 [Homo sap... 27 6.5
gi|109633031 telomerase reverse transcriptase isoform 1 [Homo sa... 27 6.5
gi|239754368 PREDICTED: hypothetical protein [Homo sapiens] 27 6.5
gi|239753972 PREDICTED: hypothetical protein [Homo sapiens] 27 6.5
>gi|239749866 PREDICTED: similar to succinate dehydrogenase complex,
subunit C [Homo sapiens]
Length = 150
Score = 327 bits (839), Expect = 2e-90
Identities = 150/150 (100%), Positives = 150/150 (100%)
Query: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTGKQEMERFWNKNTGLNRPVSPHVTIYS 60
MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTGKQEMERFWNKNTGLNRPVSPHVTIYS
Sbjct: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTGKQEMERFWNKNTGLNRPVSPHVTIYS 60
Query: 61 WSLPMAMAICHHDTGTALRADVRPRKRPEDSPAIPVWSGCPGSYCVVLCRAGSHMKNGGS 120
WSLPMAMAICHHDTGTALRADVRPRKRPEDSPAIPVWSGCPGSYCVVLCRAGSHMKNGGS
Sbjct: 61 WSLPMAMAICHHDTGTALRADVRPRKRPEDSPAIPVWSGCPGSYCVVLCRAGSHMKNGGS 120
Query: 121 QHHIPTHYYIHPSFCLSLLSPAWEKFSLFV 150
QHHIPTHYYIHPSFCLSLLSPAWEKFSLFV
Sbjct: 121 QHHIPTHYYIHPSFCLSLLSPAWEKFSLFV 150
>gi|239744168 PREDICTED: similar to succinate dehydrogenase complex,
subunit C [Homo sapiens]
Length = 150
Score = 327 bits (839), Expect = 2e-90
Identities = 150/150 (100%), Positives = 150/150 (100%)
Query: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTGKQEMERFWNKNTGLNRPVSPHVTIYS 60
MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTGKQEMERFWNKNTGLNRPVSPHVTIYS
Sbjct: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTGKQEMERFWNKNTGLNRPVSPHVTIYS 60
Query: 61 WSLPMAMAICHHDTGTALRADVRPRKRPEDSPAIPVWSGCPGSYCVVLCRAGSHMKNGGS 120
WSLPMAMAICHHDTGTALRADVRPRKRPEDSPAIPVWSGCPGSYCVVLCRAGSHMKNGGS
Sbjct: 61 WSLPMAMAICHHDTGTALRADVRPRKRPEDSPAIPVWSGCPGSYCVVLCRAGSHMKNGGS 120
Query: 121 QHHIPTHYYIHPSFCLSLLSPAWEKFSLFV 150
QHHIPTHYYIHPSFCLSLLSPAWEKFSLFV
Sbjct: 121 QHHIPTHYYIHPSFCLSLLSPAWEKFSLFV 150
>gi|78711820 succinate dehydrogenase complex, subunit C isoform 2
precursor [Homo sapiens]
Length = 150
Score = 290 bits (743), Expect = 2e-79
Identities = 132/150 (88%), Positives = 138/150 (92%)
Query: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTGKQEMERFWNKNTGLNRPVSPHVTIYS 60
MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTT K+EMERFWNKN G NRP+SPH+TIYS
Sbjct: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS 60
Query: 61 WSLPMAMAICHHDTGTALRADVRPRKRPEDSPAIPVWSGCPGSYCVVLCRAGSHMKNGGS 120
WSLPMAM+ICH TG AL ADV PRKRPEDSPAIPVWSGCPGSYCVVL AGSH+K GGS
Sbjct: 61 WSLPMAMSICHRGTGIALSADVGPRKRPEDSPAIPVWSGCPGSYCVVLYGAGSHVKKGGS 120
Query: 121 QHHIPTHYYIHPSFCLSLLSPAWEKFSLFV 150
QHH+PTHYYIHPSFCLS LSPAWEKFSLFV
Sbjct: 121 QHHLPTHYYIHPSFCLSFLSPAWEKFSLFV 150
>gi|4506863 succinate dehydrogenase complex, subunit C isoform 1
precursor [Homo sapiens]
Length = 169
Score = 153 bits (386), Expect = 6e-38
Identities = 70/82 (85%), Positives = 74/82 (90%)
Query: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTGKQEMERFWNKNTGLNRPVSPHVTIYS 60
MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTT K+EMERFWNKN G NRP+SPH+TIYS
Sbjct: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS 60
Query: 61 WSLPMAMAICHHDTGTALRADV 82
WSLPMAM+ICH TG AL A V
Sbjct: 61 WSLPMAMSICHRGTGIALSAGV 82
>gi|78711822 succinate dehydrogenase complex, subunit C isoform 3
precursor [Homo sapiens]
Length = 135
Score = 74.3 bits (181), Expect = 4e-14
Identities = 42/82 (51%), Positives = 43/82 (52%), Gaps = 34/82 (41%)
Query: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTGKQEMERFWNKNTGLNRPVSPHVTIYS 60
MAALLLRHVGRHCLRAHFSPQLCIRN
Sbjct: 1 MAALLLRHVGRHCLRAHFSPQLCIRN---------------------------------- 26
Query: 61 WSLPMAMAICHHDTGTALRADV 82
WSLPMAM+ICH TG AL A V
Sbjct: 27 WSLPMAMSICHRGTGIALSAGV 48
>gi|155369255 hypothetical protein LOC642502 [Homo sapiens]
Length = 135
Score = 74.3 bits (181), Expect = 4e-14
Identities = 42/82 (51%), Positives = 43/82 (52%), Gaps = 34/82 (41%)
Query: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTGKQEMERFWNKNTGLNRPVSPHVTIYS 60
MAALLLRHVGRHCLRAHFSPQLCIRN
Sbjct: 1 MAALLLRHVGRHCLRAHFSPQLCIRN---------------------------------- 26
Query: 61 WSLPMAMAICHHDTGTALRADV 82
WSLPMAM+ICH TG AL A V
Sbjct: 27 WSLPMAMSICHRGTGIALSAGV 48
>gi|78711824 succinate dehydrogenase complex, subunit C isoform 4
precursor [Homo sapiens]
Length = 116
Score = 39.3 bits (90), Expect = 0.001
Identities = 17/25 (68%), Positives = 19/25 (76%)
Query: 58 IYSWSLPMAMAICHHDTGTALRADV 82
+ SWSLPMAM+ICH TG AL A V
Sbjct: 5 LLSWSLPMAMSICHRGTGIALSAGV 29
>gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo
sapiens]
Length = 4911
Score = 30.0 bits (66), Expect = 0.76
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 44 KNTGLNRPVSPHVTIYSWSLPMAMAICHHDTGTALRADVRPRKRPEDSPAIPVWSGCP 101
K+ GL+R SP V+ + P+A H T + RADV R+R DS A P+ + P
Sbjct: 1980 KSLGLSR--SPVVSEQTAKGPIAAGTSDHFTKPSPRADVFQRQRIPDSYARPLLTPAP 2035
>gi|239756603 PREDICTED: hypothetical protein [Homo sapiens]
Length = 191
Score = 29.3 bits (64), Expect = 1.3
Identities = 28/95 (29%), Positives = 36/95 (37%), Gaps = 9/95 (9%)
Query: 14 LRAHFSPQLCIRNAVPLGTTGKQE--MERFWNKNTGLNRPVSPHVTIYSWSLPMAMAICH 71
+R P C+R P+ G +R K GL R P SLP A
Sbjct: 52 VRLTLFPSCCLRPPEPVQGWGSGGGWRKRARGKPVGLRRLPGPAPP----SLPPNQARPA 107
Query: 72 HDTGTALRADVRPRKRPEDSPAIPV---WSGCPGS 103
TA R V+P + P ++P W GCP S
Sbjct: 108 LRMSTAARPRVKPGRFPRAPSSVPASDDWKGCPCS 142
>gi|217272865 myotubularin related protein 4 [Homo sapiens]
Length = 1195
Score = 28.9 bits (63), Expect = 1.7
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 20/84 (23%)
Query: 79 RADVRPRKRPEDSPAIPVWSGCPG----SYCVVLCRAGSHMK---------------NGG 119
RA RP K PED A + C G LC+ G H++ N
Sbjct: 116 RATARPAK-PEDLFAFAYHAWCLGLTEEDQHTHLCQPGEHIRCRQEAELARMGFDLQNVW 174
Query: 120 SQHHIPTHYYIHPSFCLSLLSPAW 143
HI ++Y + PS+ LL P W
Sbjct: 175 RVSHINSNYKLCPSYPQKLLVPVW 198
>gi|181336739 multiple EGF-like-domains 11 [Homo sapiens]
Length = 1044
Score = 28.9 bits (63), Expect = 1.7
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 9/35 (25%)
Query: 99 GCPGSYCVVLCRAGSH---------MKNGGSQHHI 124
G G YC LC GSH +NGG+ HHI
Sbjct: 209 GYTGVYCEELCPPGSHGAHCELRCPCQNGGTCHHI 243
>gi|15042949 PR domain containing 12 [Homo sapiens]
Length = 367
Score = 27.7 bits (60), Expect = 3.8
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 13 CLRAH--FSPQLCIRNAVPLGTTGKQEMERFWNKNTGLNRPVSPHVTIYSWSLPMAMAIC 70
C+ H F+ + +R+ + + T K + RF N+ + + HV +++ P +C
Sbjct: 245 CVICHRGFNSRSNLRSHMRIHTLDKPFVCRFCNRRFSQSSTLRNHVRLHTGERPYKCQVC 304
Query: 71 H--HDTGTALRADVR-PRKRPED------SPAIPVWSGCPGSYCVVLCRAGSHMKNGGSQ 121
+ LRA + R RP SPA+P P ++ L A + +
Sbjct: 305 QSAYSQLAGLRAHQKSARHRPPSTALQAHSPALP----APHAHAPALAAAAA-AAAAAAA 359
Query: 122 HHIP 125
HH+P
Sbjct: 360 HHLP 363
>gi|49574498 hypothetical protein LOC118461 isoform 2 [Homo sapiens]
Length = 719
Score = 27.3 bits (59), Expect = 5.0
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 12 HCLRAHFSPQLCIRNAVPLGTTGKQEMERFWNKNTGLNRPVS 53
H R H S +LC R+ P G T K + + N GL+R VS
Sbjct: 639 HRPRKHLSLRLCNRDPEPGGATEKMKTHQLEN---GLSRSVS 677
>gi|206597543 hypothetical protein LOC118461 isoform 1 [Homo
sapiens]
Length = 1435
Score = 27.3 bits (59), Expect = 5.0
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 12 HCLRAHFSPQLCIRNAVPLGTTGKQEMERFWNKNTGLNRPVS 53
H R H S +LC R+ P G T K + + N GL+R VS
Sbjct: 639 HRPRKHLSLRLCNRDPEPGGATEKMKTHQLEN---GLSRSVS 677
>gi|153090207 Golgi-localized syntaphilin-related protein isoform c
[Homo sapiens]
Length = 660
Score = 27.3 bits (59), Expect = 5.0
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 68 AICHHDTGTALRADVRPRKRPEDSPAIPVWSGCPGS 103
+ C DTG V P K P D+ P+ CPGS
Sbjct: 70 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 104
>gi|153090203 Golgi-localized syntaphilin-related protein isoform b
[Homo sapiens]
Length = 662
Score = 27.3 bits (59), Expect = 5.0
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 68 AICHHDTGTALRADVRPRKRPEDSPAIPVWSGCPGS 103
+ C DTG V P K P D+ P+ CPGS
Sbjct: 72 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 106
>gi|153090201 Golgi-localized syntaphilin-related protein isoform b
[Homo sapiens]
Length = 662
Score = 27.3 bits (59), Expect = 5.0
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 68 AICHHDTGTALRADVRPRKRPEDSPAIPVWSGCPGS 103
+ C DTG V P K P D+ P+ CPGS
Sbjct: 72 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 106
>gi|153090191 Golgi-localized syntaphilin-related protein isoform b
[Homo sapiens]
Length = 662
Score = 27.3 bits (59), Expect = 5.0
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 68 AICHHDTGTALRADVRPRKRPEDSPAIPVWSGCPGS 103
+ C DTG V P K P D+ P+ CPGS
Sbjct: 72 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 106
>gi|153090182 Golgi-localized syntaphilin-related protein isoform b
[Homo sapiens]
Length = 662
Score = 27.3 bits (59), Expect = 5.0
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 68 AICHHDTGTALRADVRPRKRPEDSPAIPVWSGCPGS 103
+ C DTG V P K P D+ P+ CPGS
Sbjct: 72 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 106
>gi|148540145 Golgi-localized syntaphilin-related protein isoform b
[Homo sapiens]
Length = 662
Score = 27.3 bits (59), Expect = 5.0
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 68 AICHHDTGTALRADVRPRKRPEDSPAIPVWSGCPGS 103
+ C DTG V P K P D+ P+ CPGS
Sbjct: 72 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 106
>gi|153090205 Golgi-localized syntaphilin-related protein isoform a
[Homo sapiens]
Length = 663
Score = 27.3 bits (59), Expect = 5.0
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 68 AICHHDTGTALRADVRPRKRPEDSPAIPVWSGCPGS 103
+ C DTG V P K P D+ P+ CPGS
Sbjct: 73 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 107
>gi|153090199 Golgi-localized syntaphilin-related protein isoform a
[Homo sapiens]
Length = 663
Score = 27.3 bits (59), Expect = 5.0
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 68 AICHHDTGTALRADVRPRKRPEDSPAIPVWSGCPGS 103
+ C DTG V P K P D+ P+ CPGS
Sbjct: 73 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 107
>gi|153090197 Golgi-localized syntaphilin-related protein isoform a
[Homo sapiens]
Length = 663
Score = 27.3 bits (59), Expect = 5.0
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 68 AICHHDTGTALRADVRPRKRPEDSPAIPVWSGCPGS 103
+ C DTG V P K P D+ P+ CPGS
Sbjct: 73 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 107
>gi|153090195 Golgi-localized syntaphilin-related protein isoform a
[Homo sapiens]
Length = 663
Score = 27.3 bits (59), Expect = 5.0
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 68 AICHHDTGTALRADVRPRKRPEDSPAIPVWSGCPGS 103
+ C DTG V P K P D+ P+ CPGS
Sbjct: 73 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 107
>gi|153090187 Golgi-localized syntaphilin-related protein isoform a
[Homo sapiens]
Length = 663
Score = 27.3 bits (59), Expect = 5.0
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 68 AICHHDTGTALRADVRPRKRPEDSPAIPVWSGCPGS 103
+ C DTG V P K P D+ P+ CPGS
Sbjct: 73 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 107
>gi|153090185 Golgi-localized syntaphilin-related protein isoform a
[Homo sapiens]
Length = 663
Score = 27.3 bits (59), Expect = 5.0
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 68 AICHHDTGTALRADVRPRKRPEDSPAIPVWSGCPGS 103
+ C DTG V P K P D+ P+ CPGS
Sbjct: 73 SFCSDDTGCPSSQSVSPVKTPSDAGNSPI-GFCPGS 107
>gi|38201702 telomerase reverse transcriptase isoform 2 [Homo
sapiens]
Length = 1120
Score = 26.9 bits (58), Expect = 6.5
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 14 LRAHFSP-------QLCIRNAVPLGTTGKQEMERFWNKNTGLNRPVSPHVTIYSWSLPMA 66
LR H SP + C+R VP G G + ER + +NT + H + L
Sbjct: 452 LRQHSSPWQVYGFVRACLRRLVPPGLWGSRHNERRFLRNTKKFISLGKHAKLSLQELTWK 511
Query: 67 MAI 69
M++
Sbjct: 512 MSV 514
>gi|109633031 telomerase reverse transcriptase isoform 1 [Homo
sapiens]
Length = 1132
Score = 26.9 bits (58), Expect = 6.5
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 14 LRAHFSP-------QLCIRNAVPLGTTGKQEMERFWNKNTGLNRPVSPHVTIYSWSLPMA 66
LR H SP + C+R VP G G + ER + +NT + H + L
Sbjct: 452 LRQHSSPWQVYGFVRACLRRLVPPGLWGSRHNERRFLRNTKKFISLGKHAKLSLQELTWK 511
Query: 67 MAI 69
M++
Sbjct: 512 MSV 514
>gi|239754368 PREDICTED: hypothetical protein [Homo sapiens]
Length = 336
Score = 26.9 bits (58), Expect = 6.5
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 50 RPVSPHVTIYSWSLPMAMAICHHDTGTALRADVRPRKRPEDSPAIP 95
+P+ H T Y +L A H G L RP+ P SPA P
Sbjct: 36 QPLGAHSTPYGGTLEAVSAF--HRLGLGLPIAGRPKAGPSPSPAAP 79
>gi|239753972 PREDICTED: hypothetical protein [Homo sapiens]
Length = 298
Score = 26.9 bits (58), Expect = 6.5
Identities = 29/113 (25%), Positives = 40/113 (35%), Gaps = 27/113 (23%)
Query: 48 LNRPVSPHVTIYSWSLPMAMAICHHDTGTALRADVRPRKRPEDSPAIPVWSGCPGSYCVV 107
++ P +PH +I+ P + H T T+ P P +P+I
Sbjct: 175 IHPPPTPHPSIHPPIHPSTHPLIHPSTHTSTHPPTHPPTHPPSNPSI------------- 221
Query: 108 LCRAGSHMKNGGSQH---HIPTHYYIHPSFCLS----LLSP-----AWEKFSL 148
+ H H H P H HPS S LLSP A+ FSL
Sbjct: 222 --HSSIHPPIHPPTHPSTHPPIHSSTHPSTYFSTHPPLLSPKVLQKAFRPFSL 272
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.137 0.473
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,125,332
Number of Sequences: 37866
Number of extensions: 349786
Number of successful extensions: 901
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 883
Number of HSP's gapped (non-prelim): 45
length of query: 150
length of database: 18,247,518
effective HSP length: 93
effective length of query: 57
effective length of database: 14,725,980
effective search space: 839380860
effective search space used: 839380860
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.