Guide to the Human Genome
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Name: SDHC Sequence: fasta or formatted (116aa) NCBI GI: 78711824
Description:

succinate dehydrogenase complex, subunit C isoform 4 precursor

Referenced in:

TCA Cycle

Other entries for this name:
alt prot [169aa] succinate dehydrogenase complex, subunit C isoform 1 precursor
alt prot [150aa] succinate dehydrogenase complex, subunit C isoform 2 precursor
alt prot [135aa] succinate dehydrogenase complex, subunit C isoform 3 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         11           2
 C cysteine            1.7          2           1
 D aspartate           0.9          1           1
 E glutamate           1.7          2           1
 F phenylalanine       3.4          4           1
 G glycine             9.5         11           1
 H histidine           3.4          4           1
 I isoleucine          4.3          5           1
 K lysine              3.4          4           1
 L leucine            20.7         24           3
 M methionine          6.9          8           1
 N asparagine          1.7          2           1
 P proline             4.3          5           1
 Q glutamine           1.7          2           1
 R arginine            1.7          2           1
 S serine              9.5         11           2
 T threonine           3.4          4           1
 V valine              6.9          8           3
 W tryptophan          2.6          3           1
 Y tyrosine            2.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   succinate dehydrogenase complex, subunit C isoform 4... 
SDHC                  0.952   succinate dehydrogenase complex, subunit C isoform 1 ...
SDHC                  0.947   succinate dehydrogenase complex, subunit C isoform 3...
LOC642502             0.947   hypothetical protein LOC642502 
SDHC                  0.115   succinate dehydrogenase complex, subunit C isoform 2...
LOC100128302          0.067   PREDICTED: similar to succinate dehydrogenase compl...
LOC100128302          0.067   PREDICTED: similar to succinate dehydrogenase compl...
PGAP3                 0.024   per1-like domain containing 1 
OR10K1                0.014   olfactory receptor, family 10, subfamily K, member 1...
CLEC7A                0.005   dendritic cell-associated C-type lectin 1 isoform e ...
CLEC7A                0.005   dendritic cell-associated C-type lectin 1 isoform b ...
CLEC7A                0.005   dendritic cell-associated C-type lectin 1 isoform a ...
ASPM                  0.005   asp (abnormal spindle)-like, microcephaly associate...
HMCN1                 0.005   hemicentin 1 
GLTSCR1               0.005   glioma tumor suppressor candidate region gene 1 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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