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Search of human proteins with 239749576
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749576 PREDICTED: hypothetical protein XP_002347089 [Homo
sapiens]
(375 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749576 PREDICTED: hypothetical protein XP_002347089 [Homo ... 797 0.0
gi|169174738 PREDICTED: hypothetical protein [Homo sapiens] 125 8e-29
gi|239743760 PREDICTED: hypothetical protein XP_002342953 [Homo ... 125 8e-29
gi|239747784 PREDICTED: hypothetical protein [Homo sapiens] 120 2e-27
gi|169163288 PREDICTED: hypothetical protein [Homo sapiens] 120 2e-27
gi|239758099 PREDICTED: hypothetical protein XP_002346294 [Homo ... 117 2e-26
gi|169178848 PREDICTED: hypothetical protein [Homo sapiens] 117 2e-26
gi|169215257 PREDICTED: hypothetical protein [Homo sapiens] 114 1e-25
gi|239741273 PREDICTED: hypothetical protein XP_002342153 [Homo ... 114 1e-25
gi|239752891 PREDICTED: hypothetical protein [Homo sapiens] 114 2e-25
gi|169161055 PREDICTED: hypothetical protein [Homo sapiens] 114 2e-25
gi|169161052 PREDICTED: hypothetical protein [Homo sapiens] 112 5e-25
gi|169161059 PREDICTED: hypothetical protein [Homo sapiens] 107 2e-23
gi|157388908 hypothetical protein LOC54954 [Homo sapiens] 34 0.19
gi|32307177 forkhead box G1 [Homo sapiens] 33 0.32
gi|148727255 microtubule associated serine/threonine kinase fami... 33 0.32
gi|60097902 filaggrin [Homo sapiens] 32 0.71
gi|31652242 transcription factor 20 isoform 2 [Homo sapiens] 32 0.93
gi|31652244 transcription factor 20 isoform 1 [Homo sapiens] 32 0.93
gi|4885237 forkhead box C2 [Homo sapiens] 32 1.2
gi|219842236 feline sarcoma oncogene isoform 4 [Homo sapiens] 32 1.2
gi|219842233 feline sarcoma oncogene isoform 3 [Homo sapiens] 32 1.2
gi|219842230 feline sarcoma oncogene isoform 2 [Homo sapiens] 32 1.2
gi|4503687 feline sarcoma oncogene isoform 1 [Homo sapiens] 32 1.2
gi|239755885 PREDICTED: similar to hCG1791842 [Homo sapiens] 31 1.6
gi|193082982 zinc finger protein 837 isoform 1 [Homo sapiens] 31 1.6
gi|193082980 zinc finger protein 837 isoform 2 [Homo sapiens] 31 1.6
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens] 31 1.6
gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens] 31 1.6
gi|157739932 mesogenin 1 [Homo sapiens] 31 2.1
>gi|239749576 PREDICTED: hypothetical protein XP_002347089 [Homo
sapiens]
Length = 375
Score = 797 bits (2059), Expect = 0.0
Identities = 375/375 (100%), Positives = 375/375 (100%)
Query: 1 MEDVALCLHPEAGHVVHPRDWALSALEHGVLLKMACGLPLGTQEAHSAVGALMHGLEPQR 60
MEDVALCLHPEAGHVVHPRDWALSALEHGVLLKMACGLPLGTQEAHSAVGALMHGLEPQR
Sbjct: 1 MEDVALCLHPEAGHVVHPRDWALSALEHGVLLKMACGLPLGTQEAHSAVGALMHGLEPQR 60
Query: 61 DIKVSSFPFENDFPRPRCHLGLQGSWLHAALASSMLGWSLPTKGGQMQAPSRAVVSGPAS 120
DIKVSSFPFENDFPRPRCHLGLQGSWLHAALASSMLGWSLPTKGGQMQAPSRAVVSGPAS
Sbjct: 61 DIKVSSFPFENDFPRPRCHLGLQGSWLHAALASSMLGWSLPTKGGQMQAPSRAVVSGPAS 120
Query: 121 WLSWSQTGPGDRAMMGLSWWSWGCPEEMQNGIAARMNEMTVSTEQAPGECSGITLSSCPE 180
WLSWSQTGPGDRAMMGLSWWSWGCPEEMQNGIAARMNEMTVSTEQAPGECSGITLSSCPE
Sbjct: 121 WLSWSQTGPGDRAMMGLSWWSWGCPEEMQNGIAARMNEMTVSTEQAPGECSGITLSSCPE 180
Query: 181 AKTTHLIVTVPKPGGREESRSHSPESEQSAVLRCASHLENNPSRRATHRDCCVSLTAPKH 240
AKTTHLIVTVPKPGGREESRSHSPESEQSAVLRCASHLENNPSRRATHRDCCVSLTAPKH
Sbjct: 181 AKTTHLIVTVPKPGGREESRSHSPESEQSAVLRCASHLENNPSRRATHRDCCVSLTAPKH 240
Query: 241 RGDGDSARVTSWDDTTHHNRSLLGSRGPRVHPGPHHCHHQGPGPGLEPPTGAPQFLPSPL 300
RGDGDSARVTSWDDTTHHNRSLLGSRGPRVHPGPHHCHHQGPGPGLEPPTGAPQFLPSPL
Sbjct: 241 RGDGDSARVTSWDDTTHHNRSLLGSRGPRVHPGPHHCHHQGPGPGLEPPTGAPQFLPSPL 300
Query: 301 RVVLGMQTEEGCRAEQRGLAPFLGGTQVLCKVGGLPSSAEFNTSSHVLFPGTLQGALTHL 360
RVVLGMQTEEGCRAEQRGLAPFLGGTQVLCKVGGLPSSAEFNTSSHVLFPGTLQGALTHL
Sbjct: 301 RVVLGMQTEEGCRAEQRGLAPFLGGTQVLCKVGGLPSSAEFNTSSHVLFPGTLQGALTHL 360
Query: 361 PYRWRQGDSTDKPPA 375
PYRWRQGDSTDKPPA
Sbjct: 361 PYRWRQGDSTDKPPA 375
>gi|169174738 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 125 bits (313), Expect = 8e-29
Identities = 61/74 (82%), Positives = 65/74 (87%)
Query: 302 VVLGMQTEEGCRAEQRGLAPFLGGTQVLCKVGGLPSSAEFNTSSHVLFPGTLQGALTHLP 361
VVLGMQ EEG +A+QRGLAP LG TQV+CKV GLPS A FNTSSH+LFP TLQGALTHLP
Sbjct: 2 VVLGMQREEGHQAQQRGLAPPLGRTQVMCKVVGLPSGAGFNTSSHLLFPATLQGALTHLP 61
Query: 362 YRWRQGDSTDKPPA 375
RWRQGDSTDKPPA
Sbjct: 62 CRWRQGDSTDKPPA 75
>gi|239743760 PREDICTED: hypothetical protein XP_002342953 [Homo
sapiens]
Length = 75
Score = 125 bits (313), Expect = 8e-29
Identities = 61/74 (82%), Positives = 65/74 (87%)
Query: 302 VVLGMQTEEGCRAEQRGLAPFLGGTQVLCKVGGLPSSAEFNTSSHVLFPGTLQGALTHLP 361
VVLGMQ EEG +A+QRGLAP LG TQV+CKV GLPS A FNTSSH+LFP TLQGALTHLP
Sbjct: 2 VVLGMQREEGHQAQQRGLAPPLGRTQVMCKVVGLPSGAGFNTSSHLLFPATLQGALTHLP 61
Query: 362 YRWRQGDSTDKPPA 375
RWRQGDSTDKPPA
Sbjct: 62 CRWRQGDSTDKPPA 75
>gi|239747784 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 120 bits (302), Expect = 2e-27
Identities = 60/74 (81%), Positives = 65/74 (87%)
Query: 302 VVLGMQTEEGCRAEQRGLAPFLGGTQVLCKVGGLPSSAEFNTSSHVLFPGTLQGALTHLP 361
VVLGMQTEEG +A+QRGLAP LG TQV+CKV G PSSA F+TSSH+LFP TLQGALTHL
Sbjct: 2 VVLGMQTEEGHQAQQRGLAPPLGETQVMCKVVGRPSSAGFDTSSHLLFPATLQGALTHLL 61
Query: 362 YRWRQGDSTDKPPA 375
RWRQGDSTDKPPA
Sbjct: 62 CRWRQGDSTDKPPA 75
>gi|169163288 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 120 bits (302), Expect = 2e-27
Identities = 60/74 (81%), Positives = 65/74 (87%)
Query: 302 VVLGMQTEEGCRAEQRGLAPFLGGTQVLCKVGGLPSSAEFNTSSHVLFPGTLQGALTHLP 361
VVLGMQTEEG +A+QRGLAP LG TQV+CKV G PSSA F+TSSH+LFP TLQGALTHL
Sbjct: 2 VVLGMQTEEGHQAQQRGLAPPLGETQVMCKVVGRPSSAGFDTSSHLLFPATLQGALTHLL 61
Query: 362 YRWRQGDSTDKPPA 375
RWRQGDSTDKPPA
Sbjct: 62 CRWRQGDSTDKPPA 75
>gi|239758099 PREDICTED: hypothetical protein XP_002346294 [Homo
sapiens]
Length = 75
Score = 117 bits (292), Expect = 2e-26
Identities = 59/74 (79%), Positives = 61/74 (82%)
Query: 302 VVLGMQTEEGCRAEQRGLAPFLGGTQVLCKVGGLPSSAEFNTSSHVLFPGTLQGALTHLP 361
VVLGMQTEEG RGLAP LGGTQV+CKV GLPSS FNTSSH+LFP TLQ ALTHLP
Sbjct: 2 VVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQVALTHLP 61
Query: 362 YRWRQGDSTDKPPA 375
RWRQG STDKPPA
Sbjct: 62 CRWRQGGSTDKPPA 75
>gi|169178848 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 117 bits (292), Expect = 2e-26
Identities = 59/74 (79%), Positives = 61/74 (82%)
Query: 302 VVLGMQTEEGCRAEQRGLAPFLGGTQVLCKVGGLPSSAEFNTSSHVLFPGTLQGALTHLP 361
VVLGMQTEEG RGLAP LGGTQV+CKV GLPSS FNTSSH+LFP TLQ ALTHLP
Sbjct: 2 VVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQVALTHLP 61
Query: 362 YRWRQGDSTDKPPA 375
RWRQG STDKPPA
Sbjct: 62 CRWRQGGSTDKPPA 75
>gi|169215257 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 114 bits (285), Expect = 1e-25
Identities = 57/74 (77%), Positives = 59/74 (79%)
Query: 302 VVLGMQTEEGCRAEQRGLAPFLGGTQVLCKVGGLPSSAEFNTSSHVLFPGTLQGALTHLP 361
VVLGMQTEEG RGLAP LGGTQV+CKV GLPSS FNTSSH+LFP TLQGA TH P
Sbjct: 2 VVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHFP 61
Query: 362 YRWRQGDSTDKPPA 375
RWRQG STD PPA
Sbjct: 62 CRWRQGGSTDNPPA 75
>gi|239741273 PREDICTED: hypothetical protein XP_002342153 [Homo
sapiens]
Length = 75
Score = 114 bits (285), Expect = 1e-25
Identities = 57/74 (77%), Positives = 59/74 (79%)
Query: 302 VVLGMQTEEGCRAEQRGLAPFLGGTQVLCKVGGLPSSAEFNTSSHVLFPGTLQGALTHLP 361
VVLGMQTEEG RGLAP LGGTQV+CKV GLPSS FNTSSH+LFP TLQGA TH P
Sbjct: 2 VVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHFP 61
Query: 362 YRWRQGDSTDKPPA 375
RWRQG STD PPA
Sbjct: 62 CRWRQGGSTDNPPA 75
>gi|239752891 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 114 bits (284), Expect = 2e-25
Identities = 57/74 (77%), Positives = 59/74 (79%)
Query: 302 VVLGMQTEEGCRAEQRGLAPFLGGTQVLCKVGGLPSSAEFNTSSHVLFPGTLQGALTHLP 361
VVLGMQTEEG RGLAP LGGTQV+CKV GLPSS FNTSSH+LFP TLQGA TH P
Sbjct: 2 VVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHFP 61
Query: 362 YRWRQGDSTDKPPA 375
RWRQG STD PPA
Sbjct: 62 CRWRQGASTDNPPA 75
>gi|169161055 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 114 bits (284), Expect = 2e-25
Identities = 57/74 (77%), Positives = 59/74 (79%)
Query: 302 VVLGMQTEEGCRAEQRGLAPFLGGTQVLCKVGGLPSSAEFNTSSHVLFPGTLQGALTHLP 361
VVLGMQTEEG RGLAP LGGTQV+CKV GLPSS FNTSSH+LFP TLQGA TH P
Sbjct: 2 VVLGMQTEEGHCIMLRGLAPSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHFP 61
Query: 362 YRWRQGDSTDKPPA 375
RWRQG STD PPA
Sbjct: 62 CRWRQGASTDNPPA 75
>gi|169161052 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 112 bits (280), Expect = 5e-25
Identities = 56/74 (75%), Positives = 59/74 (79%)
Query: 302 VVLGMQTEEGCRAEQRGLAPFLGGTQVLCKVGGLPSSAEFNTSSHVLFPGTLQGALTHLP 361
VVLGM+TEEG RGLAP LGGTQV+CKV GLPSS FNTSSH+LFP TLQGA TH P
Sbjct: 2 VVLGMRTEEGHCIMLRGLAPSLGGTQVICKVLGLPSSIGFNTSSHLLFPATLQGAPTHFP 61
Query: 362 YRWRQGDSTDKPPA 375
RWRQG STD PPA
Sbjct: 62 CRWRQGGSTDNPPA 75
>gi|169161059 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 107 bits (266), Expect = 2e-23
Identities = 55/74 (74%), Positives = 57/74 (77%)
Query: 302 VVLGMQTEEGCRAEQRGLAPFLGGTQVLCKVGGLPSSAEFNTSSHVLFPGTLQGALTHLP 361
VVLGMQTEEG RGLA LGGTQV+CKV GLPSS FNTSSH+LFP TLQGA TH P
Sbjct: 2 VVLGMQTEEGHCIMLRGLAHSLGGTQVICKVVGLPSSIGFNTSSHLLFPATLQGAPTHFP 61
Query: 362 YRWRQGDSTDKPPA 375
RWRQG STD PA
Sbjct: 62 CRWRQGGSTDNLPA 75
>gi|157388908 hypothetical protein LOC54954 [Homo sapiens]
Length = 1096
Score = 34.3 bits (77), Expect = 0.19
Identities = 33/104 (31%), Positives = 38/104 (36%), Gaps = 19/104 (18%)
Query: 264 GSRGPRVHPGP-HHCHHQGPG-PGLEPPTGAPQFLPSPLRVVL------------GMQTE 309
G GP H P HH HH G PGL PP P P VL G QT+
Sbjct: 77 GGAGPIRHHHPAHHFHHHGQAQPGLHPPLPPPPPPQLPGARVLVDAGSALPRLYGGYQTD 136
Query: 310 EGCRAEQRGLAPFLGGTQVLCKVGGLPSSAEFNTSSHVLFPGTL 353
C + + LG LC+ P V+FPG L
Sbjct: 137 WVCGGQWNAM---LGYLSALCQACAYPGGDGLELV--VMFPGGL 175
>gi|32307177 forkhead box G1 [Homo sapiens]
Length = 489
Score = 33.5 bits (75), Expect = 0.32
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 257 HHNRSLLGSRGPRVHPGPHHCHHQGPGPGLEPPTGAPQFLPSP 299
HHN S P+ H HH HH P P +PP Q P P
Sbjct: 39 HHN-----SHHPQHHHHHHHHHHHPPPPAPQPPPPPQQQQPPP 76
>gi|148727255 microtubule associated serine/threonine kinase family
member 4 isoform a [Homo sapiens]
Length = 2434
Score = 33.5 bits (75), Expect = 0.32
Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 8/127 (6%)
Query: 167 PGECSGITLSSCPEAKTTHLIVTVPKPGGREESRSHSPESEQSAVLRCASHLENNPSRRA 226
P E + LS+ E +T L PKP ++ + +++ + S N RRA
Sbjct: 2123 PSEPADQKLSAVGEKQT--LSPKHPKPSTVKDCPTLCKQTDNRQTDKSPSQPAANTDRRA 2180
Query: 227 THRDCCVSLTAPKHRGDGDSARVTSWDDTTHHNRSLLGSRGPRVHPGPHHCHHQGPGPG- 285
+ C +L AP +GD ++ + H L G+ P G +G GPG
Sbjct: 2181 EGKKCTEALYAP---AEGD--KLEAGLSFVHSENRLKGAERPAAGVGKGFPEARGKGPGP 2235
Query: 286 LEPPTGA 292
+PPT A
Sbjct: 2236 QKPPTEA 2242
>gi|60097902 filaggrin [Homo sapiens]
Length = 4061
Score = 32.3 bits (72), Expect = 0.71
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 219 ENNPSRRATHRDCCVSLTAPKHRGDGDSARVTSWDDTTHHNRSLLGSRGPRVHPGPH 275
+++ SR + H+ VS + R DS R++ HH S SR HPG H
Sbjct: 1256 QSSGSRTSRHQGSSVSQDSDSERHSDDSERLSGSASRNHHGSSREQSRDGSRHPGFH 1312
>gi|31652242 transcription factor 20 isoform 2 [Homo sapiens]
Length = 1938
Score = 32.0 bits (71), Expect = 0.93
Identities = 32/112 (28%), Positives = 45/112 (40%), Gaps = 22/112 (19%)
Query: 190 VPKPGGREESRSHSPESEQSAVLRCASHLENNPSRRATHRDCCVSLTAPKHRGDGDSARV 249
V KPGG+++ S E + +A R S N ++ +H SL P+ G G S
Sbjct: 617 VEKPGGQDKG---SQEDDPAATQRPPS---NGGAKETSH----ASLPQPEPPGGGGSKGN 666
Query: 250 TSWDDTTHHNRSLLGSRGPRVHPGPHHCHHQGPGPGLEPPTGAPQFLPSPLR 301
+ D+ ++HN G G H GPG T P P LR
Sbjct: 667 KNGDNNSNHNGEGNGQSG-----------HSAAGPGFTSRT-EPSKSPGSLR 706
>gi|31652244 transcription factor 20 isoform 1 [Homo sapiens]
Length = 1960
Score = 32.0 bits (71), Expect = 0.93
Identities = 32/112 (28%), Positives = 45/112 (40%), Gaps = 22/112 (19%)
Query: 190 VPKPGGREESRSHSPESEQSAVLRCASHLENNPSRRATHRDCCVSLTAPKHRGDGDSARV 249
V KPGG+++ S E + +A R S N ++ +H SL P+ G G S
Sbjct: 617 VEKPGGQDKG---SQEDDPAATQRPPS---NGGAKETSH----ASLPQPEPPGGGGSKGN 666
Query: 250 TSWDDTTHHNRSLLGSRGPRVHPGPHHCHHQGPGPGLEPPTGAPQFLPSPLR 301
+ D+ ++HN G G H GPG T P P LR
Sbjct: 667 KNGDNNSNHNGEGNGQSG-----------HSAAGPGFTSRT-EPSKSPGSLR 706
>gi|4885237 forkhead box C2 [Homo sapiens]
Length = 501
Score = 31.6 bits (70), Expect = 1.2
Identities = 15/36 (41%), Positives = 16/36 (44%)
Query: 264 GSRGPRVHPGPHHCHHQGPGPGLEPPTGAPQFLPSP 299
G G G HH HH P PP APQ P+P
Sbjct: 377 GQEGALAATGHHHQHHGHHHPQAPPPPPAPQPQPTP 412
>gi|219842236 feline sarcoma oncogene isoform 4 [Homo sapiens]
Length = 694
Score = 31.6 bits (70), Expect = 1.2
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 252 WDDTTHHNRSLLGSRGPRVHPGPHHCHHQGPGPGL 286
W HHNR +LG R ++H H HHQ PGL
Sbjct: 119 WKLFAHHNRYVLGVRAAQLH---HQHHHQLLLPGL 150
>gi|219842233 feline sarcoma oncogene isoform 3 [Homo sapiens]
Length = 752
Score = 31.6 bits (70), Expect = 1.2
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 252 WDDTTHHNRSLLGSRGPRVHPGPHHCHHQGPGPGL 286
W HHNR +LG R ++H H HHQ PGL
Sbjct: 177 WKLFAHHNRYVLGVRAAQLH---HQHHHQLLLPGL 208
>gi|219842230 feline sarcoma oncogene isoform 2 [Homo sapiens]
Length = 764
Score = 31.6 bits (70), Expect = 1.2
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 252 WDDTTHHNRSLLGSRGPRVHPGPHHCHHQGPGPGL 286
W HHNR +LG R ++H H HHQ PGL
Sbjct: 119 WKLFAHHNRYVLGVRAAQLH---HQHHHQLLLPGL 150
>gi|4503687 feline sarcoma oncogene isoform 1 [Homo sapiens]
Length = 822
Score = 31.6 bits (70), Expect = 1.2
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 252 WDDTTHHNRSLLGSRGPRVHPGPHHCHHQGPGPGL 286
W HHNR +LG R ++H H HHQ PGL
Sbjct: 177 WKLFAHHNRYVLGVRAAQLH---HQHHHQLLLPGL 208
>gi|239755885 PREDICTED: similar to hCG1791842 [Homo sapiens]
Length = 536
Score = 31.2 bits (69), Expect = 1.6
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 224 RRATHRDCCVSLTAPKHRGDGDSARVTSWDDTTHHNRSLLGSRGPRVHPGPHHCHHQGPG 283
RR H DC V+ + +H+ S++V SW SL+ +R P +HP Q
Sbjct: 24 RRWHHGDCLVTPLSNQHQTLETSSQV-SW--------SLIPTRRPHLHPRMDFRPQQQRQ 74
Query: 284 PGLEPPTGAPQFLPSP 299
P TGA FL P
Sbjct: 75 PYFLCDTGATTFLTGP 90
>gi|193082982 zinc finger protein 837 isoform 1 [Homo sapiens]
Length = 531
Score = 31.2 bits (69), Expect = 1.6
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 264 GSRGPR--VHPGPHHCHHQGPGPGLEPPTGAPQFLPSPLRVVLGMQTEEG-CRAEQRG 318
GSRG V PGP H G P + P G L + G+Q EG CR+ RG
Sbjct: 64 GSRGCSLGVSPGPGTRHSAGTRPLVREPCGPTSSQNPELVIPEGLQAREGPCRSPARG 121
>gi|193082980 zinc finger protein 837 isoform 2 [Homo sapiens]
Length = 531
Score = 31.2 bits (69), Expect = 1.6
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 264 GSRGPR--VHPGPHHCHHQGPGPGLEPPTGAPQFLPSPLRVVLGMQTEEG-CRAEQRG 318
GSRG V PGP H G P + P G L + G+Q EG CR+ RG
Sbjct: 64 GSRGCSLGVSPGPGTRHSAGTRPLVREPCGPTSSQNPELVIPEGLQAREGPCRSPARG 121
>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
Length = 1714
Score = 31.2 bits (69), Expect = 1.6
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 264 GSRGPRVHPGPHHCHHQGPGPGLEPPTGAPQFLPSPLRVVLGMQTEEG 311
G RGPR PGPH PG + P G P F SP + V G + ++G
Sbjct: 510 GKRGPRGIPGPHGNPGLPGLPGPKGPKGDPGF--SPGQPVPGEKGDQG 555
>gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens]
Length = 464
Score = 31.2 bits (69), Expect = 1.6
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 12/47 (25%)
Query: 266 RGPRVHPGPHHCHHQGPG------------PGLEPPTGAPQFLPSPL 300
+ P VHP P H PG PG+ PPT P L PL
Sbjct: 403 QAPGVHPQPPGVHPSAPGVHPQPPGVHPSNPGVHPPTPMPPMLRPPL 449
>gi|157739932 mesogenin 1 [Homo sapiens]
Length = 193
Score = 30.8 bits (68), Expect = 2.1
Identities = 25/94 (26%), Positives = 34/94 (36%), Gaps = 9/94 (9%)
Query: 262 LLGSRGPRVHPGPHHCHHQGPGPGLEPPTGAPQFLPSPLRVVLGMQTEEGCRAEQRGLAP 321
LL S + GP + P L P + SP V G+ E G +
Sbjct: 23 LLSSWDWKDRAGPFELNQASPSQSLSPAPSLESYSSSPCPAVAGLPCEHGGASS------ 76
Query: 322 FLGGTQVLCKVGGLPSSAEFNTSSHVLFPGTLQG 355
GG++ C VGG E + + P LQG
Sbjct: 77 --GGSEG-CSVGGASGLVEVDYNMLAFQPTHLQG 107
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,495,822
Number of Sequences: 37866
Number of extensions: 1097849
Number of successful extensions: 3699
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 3615
Number of HSP's gapped (non-prelim): 125
length of query: 375
length of database: 18,247,518
effective HSP length: 104
effective length of query: 271
effective length of database: 14,309,454
effective search space: 3877862034
effective search space used: 3877862034
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.