Guide to the Human Genome
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Name: LOC283398 Sequence: fasta or formatted (536aa) NCBI GI: 239755885
Description:

PREDICTED: similar to hCG1791842

Referenced in:

TCA Cycle

Other entries for this name:
alt prot [543aa] PREDICTED: similar to sucb isoform 1
alt prot [543aa] PREDICTED: similar to hCG1791842 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         56           2
 C cysteine            1.9         10           1
 D aspartate           4.9         26           2
 E glutamate           5.8         31           2
 F phenylalanine       4.5         24           2
 G glycine             6.5         35           3
 H histidine           1.3          7           2
 I isoleucine          5.8         31           2
 K lysine              6.3         34           2
 L leucine             9.9         53           2
 M methionine          2.2         12           1
 N asparagine          5.2         28           1
 P proline             5.2         28           1
 Q glutamine           6.5         35           3
 R arginine            4.3         23           2
 S serine              4.9         26           2
 T threonine           4.9         26           2
 V valine              7.3         39           2
 W tryptophan          0.9          5           1
 Y tyrosine            1.3          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1791842 
LOC283398             0.952   PREDICTED: similar to hCG1791842 isoform 3 
LOC283398             0.952   PREDICTED: similar to sucb isoform 1 
SUCLG2                0.722   succinate-CoA ligase, GDP-forming beta subunit prec...
SUCLA2                0.337   succinate-CoA ligase, ADP-forming, beta subunit prec...
ACLY                  0.010   ATP citrate lyase isoform 2 
ACLY                  0.010   ATP citrate lyase isoform 1 
MFSD6                 0.007   major facilitator superfamily domain containing 6 [...
LOC100290132          0.006   PREDICTED: hypothetical protein XP_002347089 
CDH18                 0.006   cadherin 18, type 2 preproprotein 
GPR84                 0.005   G protein-coupled receptor 84 
SLC22A9               0.005   solute carrier family 22 (organic anion/cation trans...
UBAP2                 0.005   ubiquitin associated protein 2 
BMP2K                 0.004   BMP-2 inducible kinase isoform a 
BMP2K                 0.004   BMP-2 inducible kinase isoform b 
DIDO1                 0.004   death inducer-obliterator 1 isoform c 
DIDO1                 0.004   death inducer-obliterator 1 isoform b 
DIDO1                 0.004   death inducer-obliterator 1 isoform a 
DIDO1                 0.004   death inducer-obliterator 1 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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