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Search of human proteins with 239749519
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749519 PREDICTED: hypothetical protein [Homo sapiens]
(160 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754967 PREDICTED: hypothetical protein [Homo sapiens] 337 3e-93
gi|239749519 PREDICTED: hypothetical protein [Homo sapiens] 337 3e-93
gi|116292750 lipoprotein Lp(a) precursor [Homo sapiens] 34 0.047
gi|27734829 hypothetical protein LOC256329 [Homo sapiens] 32 0.23
gi|189491748 ataxin 1 [Homo sapiens] 31 0.40
gi|51479158 ataxin 1 [Homo sapiens] 31 0.40
gi|38569398 integrin, alpha 10 precursor [Homo sapiens] 31 0.40
gi|239751592 PREDICTED: hypothetical protein XP_002347924 [Homo ... 30 1.2
gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo ... 28 2.6
gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo ... 28 2.6
gi|157278361 nuclear localized factor 2 [Homo sapiens] 28 2.6
gi|147903292 nuclear localized factor 1 [Homo sapiens] 28 2.6
gi|239749835 PREDICTED: hypothetical protein XP_002347183 [Homo ... 28 3.4
gi|239744125 PREDICTED: hypothetical protein XP_002343039 [Homo ... 28 3.4
gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens] 28 3.4
gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens] 28 3.4
gi|27501450 axin 1 isoform a [Homo sapiens] 28 4.4
gi|31083144 axin 1 isoform b [Homo sapiens] 28 4.4
gi|114796630 homeodomain interacting protein kinase 3 isoform 2 ... 28 4.4
gi|114796624 homeodomain interacting protein kinase 3 isoform 1 ... 28 4.4
gi|4505881 plasminogen [Homo sapiens] 27 5.7
gi|169214154 PREDICTED: hypothetical protein [Homo sapiens] 27 5.7
gi|169213511 PREDICTED: hypothetical protein [Homo sapiens] 27 5.7
gi|17402900 far upstream element-binding protein [Homo sapiens] 27 5.7
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 27 5.7
gi|50345997 E1A binding protein p300 [Homo sapiens] 27 7.5
gi|47524177 fibroblast growth factor receptor 4 isoform 2 precur... 27 7.5
gi|47524175 fibroblast growth factor receptor 4 isoform 1 precur... 27 7.5
gi|47524173 fibroblast growth factor receptor 4 isoform 1 precur... 27 7.5
gi|239756041 PREDICTED: hypothetical protein XP_002344790 [Homo ... 27 7.5
>gi|239754967 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 337 bits (864), Expect = 3e-93
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MHIVEPQAGQVLEAGHVWDDHRQAAQAQIVEAQVHAAQAACIQKLQQGHSVAHGQVLSSQ 60
MHIVEPQAGQVLEAGHVWDDHRQAAQAQIVEAQVHAAQAACIQKLQQGHSVAHGQVLSSQ
Sbjct: 1 MHIVEPQAGQVLEAGHVWDDHRQAAQAQIVEAQVHAAQAACIQKLQQGHSVAHGQVLSSQ 60
Query: 61 VPAAEPQRAAHAASECLPQERIGGPVHPQVHAHLHGDGGWPRLCGPTLLLGNACASYGSS 120
VPAAEPQRAAHAASECLPQERIGGPVHPQVHAHLHGDGGWPRLCGPTLLLGNACASYGSS
Sbjct: 61 VPAAEPQRAAHAASECLPQERIGGPVHPQVHAHLHGDGGWPRLCGPTLLLGNACASYGSS 120
Query: 121 TVPHAHGARILFHTIIQEARHVQHPQRMLPGKGLCAGPRL 160
TVPHAHGARILFHTIIQEARHVQHPQRMLPGKGLCAGPRL
Sbjct: 121 TVPHAHGARILFHTIIQEARHVQHPQRMLPGKGLCAGPRL 160
>gi|239749519 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 337 bits (864), Expect = 3e-93
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MHIVEPQAGQVLEAGHVWDDHRQAAQAQIVEAQVHAAQAACIQKLQQGHSVAHGQVLSSQ 60
MHIVEPQAGQVLEAGHVWDDHRQAAQAQIVEAQVHAAQAACIQKLQQGHSVAHGQVLSSQ
Sbjct: 1 MHIVEPQAGQVLEAGHVWDDHRQAAQAQIVEAQVHAAQAACIQKLQQGHSVAHGQVLSSQ 60
Query: 61 VPAAEPQRAAHAASECLPQERIGGPVHPQVHAHLHGDGGWPRLCGPTLLLGNACASYGSS 120
VPAAEPQRAAHAASECLPQERIGGPVHPQVHAHLHGDGGWPRLCGPTLLLGNACASYGSS
Sbjct: 61 VPAAEPQRAAHAASECLPQERIGGPVHPQVHAHLHGDGGWPRLCGPTLLLGNACASYGSS 120
Query: 121 TVPHAHGARILFHTIIQEARHVQHPQRMLPGKGLCAGPRL 160
TVPHAHGARILFHTIIQEARHVQHPQRMLPGKGLCAGPRL
Sbjct: 121 TVPHAHGARILFHTIIQEARHVQHPQRMLPGKGLCAGPRL 160
>gi|116292750 lipoprotein Lp(a) precursor [Homo sapiens]
Length = 2040
Score = 34.3 bits (77), Expect = 0.047
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 51 VAHGQVLSSQVPAAEPQRAAHAASECLPQERIGGPVHPQVHAHLHGDGGWPRLCGPTLLL 110
V VL++ P P + A SE P E+ P V HGDG R T +
Sbjct: 1467 VTESSVLTT--PTVAPVPSTEAPSEQAPPEK-----SPVVQDCYHGDGRSYRGISSTTVT 1519
Query: 111 GNACASYGSSTVPHAH 126
G C S+ SS +PH H
Sbjct: 1520 GRTCQSW-SSMIPHWH 1534
Score = 31.6 bits (70), Expect = 0.30
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 60 QVPAAEPQRAAHAASECLPQERIGGPVHPQVHAHLHGDGGWPRLCGPTLLLGNACASYGS 119
+ P P + A SE P E+ P V HG+G R T + G C S+ S
Sbjct: 1588 ETPTVVPVPSMEAHSEAAPTEQT-----PVVRQCYHGNGQSYRGTFSTTVTGRTCQSWSS 1642
Query: 120 STVPHAH 126
T PH H
Sbjct: 1643 MT-PHRH 1648
Score = 30.4 bits (67), Expect = 0.68
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 62 PAAEPQRAAHAASECLPQERIGGPVHPQVHAHLHGDGGWPRLCGPTLLLGNACASYGSST 121
P P + A SE P E+ P V HG+G R T + G C ++ S T
Sbjct: 116 PTVTPVPSLEAPSEQAPTEQ-----RPGVQECYHGNGQSYRGTYSTTVTGRTCQAWSSMT 170
Query: 122 VPHAH 126
PH+H
Sbjct: 171 -PHSH 174
Score = 30.4 bits (67), Expect = 0.68
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 62 PAAEPQRAAHAASECLPQERIGGPVHPQVHAHLHGDGGWPRLCGPTLLLGNACASYGSST 121
P P + A SE P E+ P V HG+G R T + G C ++ S T
Sbjct: 230 PTVTPVPSLEAPSEQAPTEQ-----RPGVQECYHGNGQSYRGTYSTTVTGRTCQAWSSMT 284
Query: 122 VPHAH 126
PH+H
Sbjct: 285 -PHSH 288
Score = 30.4 bits (67), Expect = 0.68
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 62 PAAEPQRAAHAASECLPQERIGGPVHPQVHAHLHGDGGWPRLCGPTLLLGNACASYGSST 121
P P + A SE P E+ P V HG+G R T + G C ++ S T
Sbjct: 344 PTVTPVPSLEAPSEQAPTEQ-----RPGVQECYHGNGQSYRGTYSTTVTGRTCQAWSSMT 398
Query: 122 VPHAH 126
PH+H
Sbjct: 399 -PHSH 402
Score = 30.4 bits (67), Expect = 0.68
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 62 PAAEPQRAAHAASECLPQERIGGPVHPQVHAHLHGDGGWPRLCGPTLLLGNACASYGSST 121
P P + A SE P E+ P V HG+G R T + G C ++ S T
Sbjct: 458 PTVTPVPSLEAPSEQAPTEQ-----RPGVQECYHGNGQSYRGTYSTTVTGRTCQAWSSMT 512
Query: 122 VPHAH 126
PH+H
Sbjct: 513 -PHSH 516
Score = 30.4 bits (67), Expect = 0.68
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 62 PAAEPQRAAHAASECLPQERIGGPVHPQVHAHLHGDGGWPRLCGPTLLLGNACASYGSST 121
P P + A SE P E+ P V HG+G R T + G C ++ S T
Sbjct: 572 PTVTPVPSLEAPSEQAPTEQ-----RPGVQECYHGNGQSYRGTYSTTVTGRTCQAWSSMT 626
Query: 122 VPHAH 126
PH+H
Sbjct: 627 -PHSH 630
Score = 30.4 bits (67), Expect = 0.68
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 62 PAAEPQRAAHAASECLPQERIGGPVHPQVHAHLHGDGGWPRLCGPTLLLGNACASYGSST 121
P P + A SE P E+ P V HG+G R T + G C ++ S T
Sbjct: 686 PTVTPVPSLEAPSEQAPTEQ-----RPGVQECYHGNGQSYRGTYSTTVTGRTCQAWSSMT 740
Query: 122 VPHAH 126
PH+H
Sbjct: 741 -PHSH 744
Score = 30.4 bits (67), Expect = 0.68
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 62 PAAEPQRAAHAASECLPQERIGGPVHPQVHAHLHGDGGWPRLCGPTLLLGNACASYGSST 121
P P + A SE P E+ P V HG+G R T + G C ++ S T
Sbjct: 800 PTVTPVPSLEAPSEQAPTEQ-----RPGVQECYHGNGQSYRGTYSTTVTGRTCQAWSSMT 854
Query: 122 VPHAH 126
PH+H
Sbjct: 855 -PHSH 858
Score = 30.4 bits (67), Expect = 0.68
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 66 PQRAAHAASECLPQERIGGPVHPQVHAHLHGDGGWPRLCGPTLLLGNACASYGSSTVPHA 125
P + A+SE P E+ P V HGDG R T + G C S+ S T PH
Sbjct: 1146 PDPSTEASSEEAPTEQ-----SPGVQDCYHGDGQSYRGSFSTTVTGRTCQSWSSMT-PHW 1199
Query: 126 H 126
H
Sbjct: 1200 H 1200
Score = 28.9 bits (63), Expect = 2.0
Identities = 25/70 (35%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 59 SQVPAAEPQRAAH--AASECLPQERIGGPVHPQVHAHLHGDGGWPRLCGPTLLLGNACAS 116
+Q P E A A SE P E+ P V HGDG R T + G C S
Sbjct: 1243 TQCPVTESSVLATSTAVSEQAPTEQ-----SPTVQDCYHGDGQSYRGSFSTTVTGRTCQS 1297
Query: 117 YGSSTVPHAH 126
+ S T PH H
Sbjct: 1298 WSSMT-PHWH 1306
>gi|27734829 hypothetical protein LOC256329 [Homo sapiens]
Length = 634
Score = 32.0 bits (71), Expect = 0.23
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 15 GHVWDDHRQAAQAQIVEAQVHAAQAACIQKLQQGHSVAHGQVLSSQVPAAEP 66
GH DHR +++ +V+A ++ + + LQ+ HS HG+ + S P +P
Sbjct: 300 GHPPRDHRASSEQALVQAGSYSRDS---EDLQKTHSPRHGEPVLSPQPCTDP 348
>gi|189491748 ataxin 1 [Homo sapiens]
Length = 815
Score = 31.2 bits (69), Expect = 0.40
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 15 GHVWDDHRQAAQAQIVEAQVHAAQAACIQKLQQGH-SVAHGQVLSSQVPAAEPQRAAHAA 73
GH + +Q Q Q + Q Q Q+ QQ H S A G + P A+ + H +
Sbjct: 192 GHKAEQQQQQQQQQQQQHQHQQQQQQQQQQQQQQHLSRAPGLITPGSPPPAQQNQYVHIS 251
Query: 74 SECLPQERIGGPVHPQVHAHLH 95
S R P VH H H
Sbjct: 252 SSPQNTGRTASPPAIPVHLHPH 273
>gi|51479158 ataxin 1 [Homo sapiens]
Length = 815
Score = 31.2 bits (69), Expect = 0.40
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 15 GHVWDDHRQAAQAQIVEAQVHAAQAACIQKLQQGH-SVAHGQVLSSQVPAAEPQRAAHAA 73
GH + +Q Q Q + Q Q Q+ QQ H S A G + P A+ + H +
Sbjct: 192 GHKAEQQQQQQQQQQQQHQHQQQQQQQQQQQQQQHLSRAPGLITPGSPPPAQQNQYVHIS 251
Query: 74 SECLPQERIGGPVHPQVHAHLH 95
S R P VH H H
Sbjct: 252 SSPQNTGRTASPPAIPVHLHPH 273
>gi|38569398 integrin, alpha 10 precursor [Homo sapiens]
Length = 1167
Score = 31.2 bits (69), Expect = 0.40
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 14/68 (20%)
Query: 70 AHAASECLPQERIGGPVHPQVHAHL-------HGDGG-------WPRLCGPTLLLGNACA 115
A A L ++G HP V+ HL GDGG W R CG ++ CA
Sbjct: 84 APCAKGHLGDYQLGNSSHPAVNMHLGMSLLETDGDGGFMACAPLWSRACGSSVFSSGICA 143
Query: 116 SYGSSTVP 123
+S P
Sbjct: 144 RVDASFQP 151
>gi|239751592 PREDICTED: hypothetical protein XP_002347924 [Homo
sapiens]
Length = 475
Score = 29.6 bits (65), Expect = 1.2
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 49 HSVAHGQVLSSQVPAAEPQRAAHAASECLPQERIGGPVHPQVHAHLH 95
H H V S P+ P + H ++ I PVHP +H H+H
Sbjct: 111 HPFIHPSVHPSNHPSVHP--STHPSTHPSIHPFIHPPVHPPIHLHIH 155
>gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo
sapiens]
Length = 258
Score = 28.5 bits (62), Expect = 2.6
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 54 GQVLSSQVPAAEPQ-RAAHAASECLPQERIGGPVHPQVHAHLHGDGGWPRLCGPTLLLGN 112
G+ + P+ P+ R + P G P HP G G PR+CGP
Sbjct: 166 GRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSHPG------GAGCCPRVCGPAAGCLP 219
Query: 113 ACASY 117
CAS+
Sbjct: 220 LCASH 224
>gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo
sapiens]
Length = 258
Score = 28.5 bits (62), Expect = 2.6
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 54 GQVLSSQVPAAEPQ-RAAHAASECLPQERIGGPVHPQVHAHLHGDGGWPRLCGPTLLLGN 112
G+ + P+ P+ R + P G P HP G G PR+CGP
Sbjct: 166 GRAQCAGSPSTAPRPRTCSSPGRATPHRPAGQPSHPG------GAGCCPRVCGPAAGCLP 219
Query: 113 ACASY 117
CAS+
Sbjct: 220 LCASH 224
>gi|157278361 nuclear localized factor 2 [Homo sapiens]
Length = 364
Score = 28.5 bits (62), Expect = 2.6
Identities = 25/79 (31%), Positives = 27/79 (34%), Gaps = 24/79 (30%)
Query: 82 IGGPVHPQVHAHLHGDGGWPRLCGPTLLLGNACASYG-SSTVPHAHGARILFHTIIQEAR 140
+GGP P+ AH G GG GP LG C G P A G
Sbjct: 117 LGGPPAPRPRAHSCGGGG-----GPDAPLGTLCGPRGPGPATPAAPGG------------ 159
Query: 141 HVQHPQRMLPGKGLCAGPR 159
LP L AGPR
Sbjct: 160 ------PRLPQDALAAGPR 172
>gi|147903292 nuclear localized factor 1 [Homo sapiens]
Length = 369
Score = 28.5 bits (62), Expect = 2.6
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Query: 82 IGGPVHPQVHAHLHGDGGWPRLCGPTLLLG 111
+GGP P+ AH +G GG GP LLG
Sbjct: 122 LGGPPAPRPRAHTYGGGG-----GPDALLG 146
>gi|239749835 PREDICTED: hypothetical protein XP_002347183 [Homo
sapiens]
Length = 321
Score = 28.1 bits (61), Expect = 3.4
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 99 GWPRLCGPTLLLGNACASYGSSTVPH-------AHGARILFHTIIQEARHVQHPQRMLPG 151
G R CGP +LLG + S+G +T H GAR+ ++ R + G
Sbjct: 36 GVRRRCGPGVLLGASSVSWGLATSGHQGRGCGDGGGARVPTKSVPGGGPRASRSVREVAG 95
Query: 152 KGLCAGP 158
G P
Sbjct: 96 GGFACNP 102
>gi|239744125 PREDICTED: hypothetical protein XP_002343039 [Homo
sapiens]
Length = 321
Score = 28.1 bits (61), Expect = 3.4
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 99 GWPRLCGPTLLLGNACASYGSSTVPH-------AHGARILFHTIIQEARHVQHPQRMLPG 151
G R CGP +LLG + S+G +T H GAR+ ++ R + G
Sbjct: 36 GVRRRCGPGVLLGASSVSWGLATSGHQGRGCGDGGGARVPTKSVPGGGPRASRSVREVAG 95
Query: 152 KGLCAGP 158
G P
Sbjct: 96 GGFACNP 102
>gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens]
Length = 3333
Score = 28.1 bits (61), Expect = 3.4
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 11/43 (25%)
Query: 87 HPQVHAHLHGDGGWPRLCGPTLLLGNACASYGSSTVPHAHGAR 129
HP A + DGGWPR S+ +S PH G R
Sbjct: 1138 HPTFPAQVSVDGGWPR-----------AGSFHASFCPHVLGCR 1169
>gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens]
Length = 3277
Score = 28.1 bits (61), Expect = 3.4
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 11/43 (25%)
Query: 87 HPQVHAHLHGDGGWPRLCGPTLLLGNACASYGSSTVPHAHGAR 129
HP A + DGGWPR S+ +S PH G R
Sbjct: 1138 HPTFPAQVSVDGGWPR-----------AGSFHASFCPHVLGCR 1169
>gi|27501450 axin 1 isoform a [Homo sapiens]
Length = 862
Score = 27.7 bits (60), Expect = 4.4
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 87 HPQVHAHLHGDGGWPRLCGPTLLLGNACASYGSSTVPHAHGAR 129
H VH H+H P+ A +S+ PH+HGAR
Sbjct: 532 HRHVHHHVHHSTARPKEQVEAEATRRAQSSFAWGLEPHSHGAR 574
>gi|31083144 axin 1 isoform b [Homo sapiens]
Length = 826
Score = 27.7 bits (60), Expect = 4.4
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 87 HPQVHAHLHGDGGWPRLCGPTLLLGNACASYGSSTVPHAHGAR 129
H VH H+H P+ A +S+ PH+HGAR
Sbjct: 532 HRHVHHHVHHSTARPKEQVEAEATRRAQSSFAWGLEPHSHGAR 574
>gi|114796630 homeodomain interacting protein kinase 3 isoform 2 [Homo
sapiens]
Length = 1194
Score = 27.7 bits (60), Expect = 4.4
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 83 GGPVHPQVHAHLHGDGGWPRLCGPTLLLGNACASYGSSTVPHAH 126
G P H VHAHL G+ L G LL ++ SS P AH
Sbjct: 1074 GSPNHTAVHAHLAGN---THLGGQPTLLPYPSSATLSSAAPVAH 1114
>gi|114796624 homeodomain interacting protein kinase 3 isoform 1 [Homo
sapiens]
Length = 1215
Score = 27.7 bits (60), Expect = 4.4
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 83 GGPVHPQVHAHLHGDGGWPRLCGPTLLLGNACASYGSSTVPHAH 126
G P H VHAHL G+ L G LL ++ SS P AH
Sbjct: 1095 GSPNHTAVHAHLAGN---THLGGQPTLLPYPSSATLSSAAPVAH 1135
>gi|4505881 plasminogen [Homo sapiens]
Length = 810
Score = 27.3 bits (59), Expect = 5.7
Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 88 PQVHAHLHGDGGWPRLCGPTLLLGNACASYGSSTVPHAH 126
P V HGDG R T G C S+ S T PH H
Sbjct: 372 PVVQDCYHGDGQSYRGTSSTTTTGKKCQSWSSMT-PHRH 409
>gi|169214154 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 27.3 bits (59), Expect = 5.7
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 33 QVHAAQAACIQKLQQGHSVAHGQVLSSQVPAAEPQRAAH-------AASECLPQERIGGP 85
+ A+A + +L+ GH+V Q L +Q+ A P R A A C+ R P
Sbjct: 434 RARVARAQQLARLRVGHAVQAPQALQAQLHARLPSRRARSSAPAPSAQGRCMTPAR--SP 491
Query: 86 VHPQVHAHLHG 96
V + A L G
Sbjct: 492 VAAREAARLRG 502
>gi|169213511 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 27.3 bits (59), Expect = 5.7
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 33 QVHAAQAACIQKLQQGHSVAHGQVLSSQVPAAEPQRAAH-------AASECLPQERIGGP 85
+ A+A + +L+ GH+V Q L +Q+ A P R A A C+ R P
Sbjct: 434 RARVARAQQLARLRVGHAVQAPQALQAQLHARLPSRRARSSAPAPSAQGRCMTPAR--SP 491
Query: 86 VHPQVHAHLHG 96
V + A L G
Sbjct: 492 VAAREAARLRG 502
>gi|17402900 far upstream element-binding protein [Homo sapiens]
Length = 644
Score = 27.3 bits (59), Expect = 5.7
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 66 PQRAAHAASECLPQERIGGPVHPQVHAHLHGDGGWPRLCGP 106
PQ+ +A L +E+IGGPV+P HG G P GP
Sbjct: 433 PQQIDYARQ--LIEEKIGGPVNPLGPPVPHGPHGVPGPHGP 471
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 27.3 bits (59), Expect = 5.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 78 PQERIGGPVHPQVHAHLHGD 97
P +GGP+HP +H +H D
Sbjct: 620 PPGPMGGPMHPDMHPDMHPD 639
>gi|50345997 E1A binding protein p300 [Homo sapiens]
Length = 2414
Score = 26.9 bits (58), Expect = 7.5
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 42 IQKLQQGHSVAHGQVLSSQVPAAEPQRAAHAASECLPQERIGGPVHP 88
+Q++QQG+ GQ+ Q AE + A + L Q+++G PV P
Sbjct: 2231 MQQMQQGNMGQIGQL--PQALGAEAGASLQAYQQRLLQQQMGSPVQP 2275
>gi|47524177 fibroblast growth factor receptor 4 isoform 2 precursor
[Homo sapiens]
Length = 762
Score = 26.9 bits (58), Expect = 7.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 107 TLLLGNACASYGSSTVPHAHGARILFHTIIQEARHVQHPQRM 148
TL+ G++ S P +H H+ Q+A + HPQRM
Sbjct: 114 TLITGDSLTSSNDDEDPKSHRDPSNRHSYPQQAPYWTHPQRM 155
>gi|47524175 fibroblast growth factor receptor 4 isoform 1 precursor
[Homo sapiens]
Length = 802
Score = 26.9 bits (58), Expect = 7.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 107 TLLLGNACASYGSSTVPHAHGARILFHTIIQEARHVQHPQRM 148
TL+ G++ S P +H H+ Q+A + HPQRM
Sbjct: 114 TLITGDSLTSSNDDEDPKSHRDPSNRHSYPQQAPYWTHPQRM 155
>gi|47524173 fibroblast growth factor receptor 4 isoform 1 precursor
[Homo sapiens]
Length = 802
Score = 26.9 bits (58), Expect = 7.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 107 TLLLGNACASYGSSTVPHAHGARILFHTIIQEARHVQHPQRM 148
TL+ G++ S P +H H+ Q+A + HPQRM
Sbjct: 114 TLITGDSLTSSNDDEDPKSHRDPSNRHSYPQQAPYWTHPQRM 155
>gi|239756041 PREDICTED: hypothetical protein XP_002344790 [Homo
sapiens]
Length = 172
Score = 26.9 bits (58), Expect = 7.5
Identities = 16/33 (48%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 78 PQERIGGPVHPQVHAHLHGDGGWPRLC--GPTL 108
P R GGP VH LH G W LC GP L
Sbjct: 48 PLRREGGPA---VHEALHRGGRWRLLCARGPVL 77
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.133 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,073,611
Number of Sequences: 37866
Number of extensions: 319181
Number of successful extensions: 867
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 834
Number of HSP's gapped (non-prelim): 60
length of query: 160
length of database: 18,247,518
effective HSP length: 94
effective length of query: 66
effective length of database: 14,688,114
effective search space: 969415524
effective search space used: 969415524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.