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Search of human proteins with 117938732
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|117938732 constitutive androstane receptor isoform 11 [Homo
sapiens]
(280 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|117938732 constitutive androstane receptor isoform 11 [Homo s... 561 e-160
gi|117938734 constitutive androstane receptor isoform 5 [Homo sa... 550 e-157
gi|117938754 constitutive androstane receptor isoform 4 [Homo sa... 544 e-155
gi|117938750 constitutive androstane receptor isoform 10 [Homo s... 542 e-154
gi|117938736 constitutive androstane receptor isoform 9 [Homo sa... 540 e-154
gi|4826661 constitutive androstane receptor isoform 3 [Homo sapi... 531 e-151
gi|117938752 constitutive androstane receptor isoform 2 [Homo sa... 529 e-151
gi|117938756 constitutive androstane receptor isoform 1 [Homo sa... 527 e-150
gi|117938742 constitutive androstane receptor isoform 15 [Homo s... 481 e-136
gi|117938740 constitutive androstane receptor isoform 8 [Homo sa... 469 e-132
gi|117938748 constitutive androstane receptor isoform 14 [Homo s... 461 e-130
gi|117938744 constitutive androstane receptor isoform 13 [Homo s... 459 e-130
gi|117938738 constitutive androstane receptor isoform 12 [Homo s... 458 e-129
gi|117938746 constitutive androstane receptor isoform 7 [Homo sa... 448 e-126
gi|117938729 constitutive androstane receptor isoform 6 [Homo sa... 448 e-126
gi|14702164 nuclear receptor subfamily 1, group I, member 2 isof... 193 2e-49
gi|11863132 nuclear receptor subfamily 1, group I, member 2 isof... 181 5e-46
gi|34398348 nuclear receptor subfamily 1, group I, member 2 isof... 181 5e-46
gi|189491771 thyroid hormone receptor, beta [Homo sapiens] 94 1e-19
gi|189491769 thyroid hormone receptor, beta [Homo sapiens] 94 1e-19
gi|40806162 thyroid hormone receptor, beta [Homo sapiens] 94 1e-19
gi|194294519 nuclear receptor subfamily 1, group H, member 3 iso... 90 3e-18
gi|194294517 nuclear receptor subfamily 1, group H, member 3 iso... 90 3e-18
gi|223718064 retinoic acid receptor, alpha isoform 1 [Homo sapiens] 88 1e-17
gi|67459914 retinoic acid receptor, alpha isoform 2 [Homo sapiens] 88 1e-17
gi|4506419 retinoic acid receptor, alpha isoform 1 [Homo sapiens] 88 1e-17
gi|63054845 vitamin D (1,25-dihydroxyvitamin D3) receptor [Homo ... 87 1e-17
gi|4507883 vitamin D (1,25-dihydroxyvitamin D3) receptor [Homo s... 87 1e-17
gi|40806160 thyroid hormone receptor, alpha isoform 1 [Homo sapi... 86 3e-17
gi|112181200 retinoic acid receptor, gamma isoform 2 [Homo sapiens] 84 1e-16
>gi|117938732 constitutive androstane receptor isoform 11 [Homo
sapiens]
Length = 280
Score = 561 bits (1447), Expect = e-160
Identities = 280/280 (100%), Positives = 280/280 (100%)
Query: 1 MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL 60
MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL
Sbjct: 1 MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL 60
Query: 61 RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP 120
RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP
Sbjct: 61 RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP 120
Query: 121 TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT 180
TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT
Sbjct: 121 TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT 180
Query: 181 FCLQTQNFLCGPLRYTIEDGARDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFL 240
FCLQTQNFLCGPLRYTIEDGARDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFL
Sbjct: 181 FCLQTQNFLCGPLRYTIEDGARDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFL 240
Query: 241 YAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS 280
YAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
Sbjct: 241 YAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS 280
>gi|117938734 constitutive androstane receptor isoform 5 [Homo
sapiens]
Length = 309
Score = 550 bits (1417), Expect = e-157
Identities = 274/274 (100%), Positives = 274/274 (100%)
Query: 7 RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 66
RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA
Sbjct: 36 RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 95
Query: 67 QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 126
QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL
Sbjct: 96 QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 155
Query: 127 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 186
PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ
Sbjct: 156 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 215
Query: 187 NFLCGPLRYTIEDGARDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLG 246
NFLCGPLRYTIEDGARDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLG
Sbjct: 216 NFLCGPLRYTIEDGARDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLG 275
Query: 247 LLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS 280
LLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
Sbjct: 276 LLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS 309
>gi|117938754 constitutive androstane receptor isoform 4 [Homo
sapiens]
Length = 314
Score = 544 bits (1401), Expect = e-155
Identities = 274/279 (98%), Positives = 274/279 (98%), Gaps = 5/279 (1%)
Query: 7 RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 66
RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA
Sbjct: 36 RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 95
Query: 67 QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 126
QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL
Sbjct: 96 QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 155
Query: 127 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 186
PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ
Sbjct: 156 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 215
Query: 187 NFLCGPLRYTIEDGAR-----DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLY 241
NFLCGPLRYTIEDGAR DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLY
Sbjct: 216 NFLCGPLRYTIEDGARAPYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLY 275
Query: 242 AKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS 280
AKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
Sbjct: 276 AKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS 314
>gi|117938750 constitutive androstane receptor isoform 10 [Homo
sapiens]
Length = 319
Score = 542 bits (1397), Expect = e-154
Identities = 280/319 (87%), Positives = 280/319 (87%), Gaps = 39/319 (12%)
Query: 1 MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL 60
MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL
Sbjct: 1 MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL 60
Query: 61 RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP 120
RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP
Sbjct: 61 RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP 120
Query: 121 TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT 180
TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT
Sbjct: 121 TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT 180
Query: 181 FCLQTQNFLCGPLRYTIEDGAR-------------------------------------- 202
FCLQTQNFLCGPLRYTIEDGAR
Sbjct: 181 FCLQTQNFLCGPLRYTIEDGARVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFS 240
Query: 203 -DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQ 261
DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQ
Sbjct: 241 PDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQ 300
Query: 262 IQHIQGLSAMMPLLQEICS 280
IQHIQGLSAMMPLLQEICS
Sbjct: 301 IQHIQGLSAMMPLLQEICS 319
>gi|117938736 constitutive androstane receptor isoform 9 [Homo
sapiens]
Length = 324
Score = 540 bits (1392), Expect = e-154
Identities = 280/324 (86%), Positives = 280/324 (86%), Gaps = 44/324 (13%)
Query: 1 MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL 60
MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL
Sbjct: 1 MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL 60
Query: 61 RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP 120
RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP
Sbjct: 61 RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP 120
Query: 121 TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT 180
TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT
Sbjct: 121 TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT 180
Query: 181 FCLQTQNFLCGPLRYTIEDGAR-------------------------------------- 202
FCLQTQNFLCGPLRYTIEDGAR
Sbjct: 181 FCLQTQNFLCGPLRYTIEDGARVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFS 240
Query: 203 ------DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINE 256
DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINE
Sbjct: 241 PAPYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINE 300
Query: 257 AYGYQIQHIQGLSAMMPLLQEICS 280
AYGYQIQHIQGLSAMMPLLQEICS
Sbjct: 301 AYGYQIQHIQGLSAMMPLLQEICS 324
>gi|4826661 constitutive androstane receptor isoform 3 [Homo
sapiens]
Length = 348
Score = 531 bits (1367), Expect = e-151
Identities = 274/313 (87%), Positives = 274/313 (87%), Gaps = 39/313 (12%)
Query: 7 RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 66
RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA
Sbjct: 36 RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 95
Query: 67 QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 126
QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL
Sbjct: 96 QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 155
Query: 127 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 186
PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ
Sbjct: 156 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 215
Query: 187 NFLCGPLRYTIEDGAR---------------------------------------DRPGV 207
NFLCGPLRYTIEDGAR DRPGV
Sbjct: 216 NFLCGPLRYTIEDGARVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPDRPGV 275
Query: 208 TQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQG 267
TQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQG
Sbjct: 276 TQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQG 335
Query: 268 LSAMMPLLQEICS 280
LSAMMPLLQEICS
Sbjct: 336 LSAMMPLLQEICS 348
>gi|117938752 constitutive androstane receptor isoform 2 [Homo
sapiens]
Length = 352
Score = 529 bits (1363), Expect = e-151
Identities = 274/317 (86%), Positives = 274/317 (86%), Gaps = 43/317 (13%)
Query: 7 RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 66
RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA
Sbjct: 36 RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 95
Query: 67 QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 126
QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL
Sbjct: 96 QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 155
Query: 127 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 186
PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ
Sbjct: 156 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 215
Query: 187 NFLCGPLRYTIEDGAR-------------------------------------------D 203
NFLCGPLRYTIEDGAR D
Sbjct: 216 NFLCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPD 275
Query: 204 RPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQ 263
RPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQ
Sbjct: 276 RPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQ 335
Query: 264 HIQGLSAMMPLLQEICS 280
HIQGLSAMMPLLQEICS
Sbjct: 336 HIQGLSAMMPLLQEICS 352
>gi|117938756 constitutive androstane receptor isoform 1 [Homo
sapiens]
Length = 357
Score = 527 bits (1358), Expect = e-150
Identities = 274/322 (85%), Positives = 274/322 (85%), Gaps = 48/322 (14%)
Query: 7 RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 66
RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA
Sbjct: 36 RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 95
Query: 67 QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 126
QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL
Sbjct: 96 QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 155
Query: 127 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 186
PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ
Sbjct: 156 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 215
Query: 187 NFLCGPLRYTIEDGAR-------------------------------------------- 202
NFLCGPLRYTIEDGAR
Sbjct: 216 NFLCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPA 275
Query: 203 ----DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAY 258
DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAY
Sbjct: 276 PYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAY 335
Query: 259 GYQIQHIQGLSAMMPLLQEICS 280
GYQIQHIQGLSAMMPLLQEICS
Sbjct: 336 GYQIQHIQGLSAMMPLLQEICS 357
>gi|117938742 constitutive androstane receptor isoform 15 [Homo
sapiens]
Length = 267
Score = 481 bits (1237), Expect = e-136
Identities = 238/238 (100%), Positives = 238/238 (100%)
Query: 1 MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL 60
MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL
Sbjct: 1 MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL 60
Query: 61 RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP 120
RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP
Sbjct: 61 RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP 120
Query: 121 TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT 180
TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT
Sbjct: 121 TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT 180
Query: 181 FCLQTQNFLCGPLRYTIEDGARDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 238
FCLQTQNFLCGPLRYTIEDGARDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR
Sbjct: 181 FCLQTQNFLCGPLRYTIEDGARDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 238
>gi|117938740 constitutive androstane receptor isoform 8 [Homo
sapiens]
Length = 296
Score = 469 bits (1207), Expect = e-132
Identities = 232/232 (100%), Positives = 232/232 (100%)
Query: 7 RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 66
RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA
Sbjct: 36 RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 95
Query: 67 QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 126
QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL
Sbjct: 96 QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 155
Query: 127 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 186
PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ
Sbjct: 156 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 215
Query: 187 NFLCGPLRYTIEDGARDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 238
NFLCGPLRYTIEDGARDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR
Sbjct: 216 NFLCGPLRYTIEDGARDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 267
>gi|117938748 constitutive androstane receptor isoform 14 [Homo
sapiens]
Length = 306
Score = 461 bits (1187), Expect = e-130
Identities = 238/277 (85%), Positives = 238/277 (85%), Gaps = 39/277 (14%)
Query: 1 MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL 60
MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL
Sbjct: 1 MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL 60
Query: 61 RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP 120
RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP
Sbjct: 61 RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP 120
Query: 121 TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT 180
TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT
Sbjct: 121 TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT 180
Query: 181 FCLQTQNFLCGPLRYTIEDGAR-------------------------------------- 202
FCLQTQNFLCGPLRYTIEDGAR
Sbjct: 181 FCLQTQNFLCGPLRYTIEDGARVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFS 240
Query: 203 -DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 238
DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR
Sbjct: 241 PDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 277
>gi|117938744 constitutive androstane receptor isoform 13 [Homo
sapiens]
Length = 311
Score = 459 bits (1182), Expect = e-130
Identities = 238/282 (84%), Positives = 238/282 (84%), Gaps = 44/282 (15%)
Query: 1 MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL 60
MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL
Sbjct: 1 MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL 60
Query: 61 RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP 120
RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP
Sbjct: 61 RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP 120
Query: 121 TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT 180
TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT
Sbjct: 121 TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT 180
Query: 181 FCLQTQNFLCGPLRYTIEDGAR-------------------------------------- 202
FCLQTQNFLCGPLRYTIEDGAR
Sbjct: 181 FCLQTQNFLCGPLRYTIEDGARVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFS 240
Query: 203 ------DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 238
DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR
Sbjct: 241 PAPYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 282
>gi|117938738 constitutive androstane receptor isoform 12 [Homo
sapiens]
Length = 315
Score = 458 bits (1178), Expect = e-129
Identities = 238/286 (83%), Positives = 238/286 (83%), Gaps = 48/286 (16%)
Query: 1 MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL 60
MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL
Sbjct: 1 MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALAL 60
Query: 61 RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP 120
RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP
Sbjct: 61 RRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLP 120
Query: 121 TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT 180
TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT
Sbjct: 121 TLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTT 180
Query: 181 FCLQTQNFLCGPLRYTIEDGAR-------------------------------------- 202
FCLQTQNFLCGPLRYTIEDGAR
Sbjct: 181 FCLQTQNFLCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAM 240
Query: 203 ----------DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 238
DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR
Sbjct: 241 ALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 286
>gi|117938746 constitutive androstane receptor isoform 7 [Homo
sapiens]
Length = 339
Score = 448 bits (1153), Expect = e-126
Identities = 232/275 (84%), Positives = 232/275 (84%), Gaps = 43/275 (15%)
Query: 7 RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 66
RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA
Sbjct: 36 RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 95
Query: 67 QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 126
QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL
Sbjct: 96 QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 155
Query: 127 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 186
PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ
Sbjct: 156 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 215
Query: 187 NFLCGPLRYTIEDGAR-------------------------------------------D 203
NFLCGPLRYTIEDGAR D
Sbjct: 216 NFLCGPLRYTIEDGARVSPTVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPD 275
Query: 204 RPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 238
RPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR
Sbjct: 276 RPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 310
>gi|117938729 constitutive androstane receptor isoform 6 [Homo
sapiens]
Length = 340
Score = 448 bits (1152), Expect = e-126
Identities = 232/276 (84%), Positives = 232/276 (84%), Gaps = 44/276 (15%)
Query: 7 RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 66
RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA
Sbjct: 36 RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 95
Query: 67 QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 126
QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL
Sbjct: 96 QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 155
Query: 127 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 186
PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ
Sbjct: 156 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ 215
Query: 187 NFLCGPLRYTIEDGAR-------------------------------------------- 202
NFLCGPLRYTIEDGAR
Sbjct: 216 NFLCGPLRYTIEDGARVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLT 275
Query: 203 DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 238
DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR
Sbjct: 276 DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDR 311
>gi|14702164 nuclear receptor subfamily 1, group I, member 2 isoform
3 [Homo sapiens]
Length = 397
Score = 193 bits (490), Expect = 2e-49
Identities = 118/326 (36%), Positives = 173/326 (53%), Gaps = 54/326 (16%)
Query: 7 RRTVSKSIGPTCPFA-GSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQ 65
RR + ++ CPF G+CE+++ RR C ACRL+KCL++GM+K+MI+S EA+ RRA
Sbjct: 66 RRAMKRNARLRCPFRKGACEITRKTRRQCQACRLRKCLESGMKKEMIMSDEAVEERRALI 125
Query: 66 AQRRAQQTPVQ------LSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPL 119
++++++T Q L++EQ +IR L+ A + T F F FR L +
Sbjct: 126 KRKKSERTGTQPLGVQGLTEEQRMMIRELMDAQMKTFDTTFSHFKNFRVSLQLRGEDGSV 185
Query: 120 PTLAP--------VLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVE 171
P + L+ H AD++T+M +I F K + FR LPIEDQISLLKGAA E
Sbjct: 186 WNYKPPADSGGKEIFSLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFE 245
Query: 172 ICHIVLNTTFCLQTQNFLCGPLRYTIEDGA------------------------------ 201
+C + NT F +T + CG L Y +ED A
Sbjct: 246 LCQLRFNTVFNAETGTWECGRLSYCLEDTAGGFQQLLLEPMLKFHYMLKKLQLHEEEYVL 305
Query: 202 --------RDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRS 253
DRPGV Q +DQLQE+ A+TL+SYI+ + +P RFL+ K++ +L ELRS
Sbjct: 306 MQAISLFSPDRPGVLQHRVVDQLQEQFAITLKSYIECNRPQPAHRFLFLKIMAMLTELRS 365
Query: 254 INEAYGYQIQHIQGLSAM-MPLLQEI 278
IN + ++ IQ + PL+QE+
Sbjct: 366 INAQHTQRLLRIQDIHPFATPLMQEL 391
>gi|11863132 nuclear receptor subfamily 1, group I, member 2 isoform
2 [Homo sapiens]
Length = 473
Score = 181 bits (460), Expect = 5e-46
Identities = 121/363 (33%), Positives = 176/363 (48%), Gaps = 91/363 (25%)
Query: 7 RRTVSKSIGPTCPFA-GSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQ 65
RR + ++ CPF G+CE+++ RR C ACRL+KCL++GM+K+MI+S EA+ RRA
Sbjct: 105 RRAMKRNARLRCPFRKGACEITRKTRRQCQACRLRKCLESGMKKEMIMSDEAVEERRALI 164
Query: 66 AQRRAQQTPVQ------LSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQ-P 118
++++++T Q L++EQ +IR L+ A + T F F FR P L + P
Sbjct: 165 KRKKSERTGTQPLGVQGLTEEQRMMIRELMDAQMKTFDTTFSHFKNFRLPGVLSSGCELP 224
Query: 119 LPTLAP--------------------------------------------VLPLVTHFAD 134
AP + L+ H AD
Sbjct: 225 ESLQAPSREEAAKWSQVRKDLCSLKVSLQLRGEDGSVWNYKPPADSGGKEIFSLLPHMAD 284
Query: 135 INTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLR 194
++T+M +I F K + FR LPIEDQISLLKGAA E+C + NT F +T + CG L
Sbjct: 285 MSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAETGTWECGRLS 344
Query: 195 YTIEDGA--------------------------------------RDRPGVTQRDEIDQL 216
Y +ED A DRPGV Q +DQL
Sbjct: 345 YCLEDTAGGFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQL 404
Query: 217 QEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAM-MPLL 275
QE+ A+TL+SYI+ + +P RFL+ K++ +L ELRSIN + ++ IQ + PL+
Sbjct: 405 QEQFAITLKSYIECNRPQPAHRFLFLKIMAMLTELRSINAQHTQRLLRIQDIHPFATPLM 464
Query: 276 QEI 278
QE+
Sbjct: 465 QEL 467
>gi|34398348 nuclear receptor subfamily 1, group I, member 2 isoform
1 [Homo sapiens]
Length = 434
Score = 181 bits (460), Expect = 5e-46
Identities = 121/363 (33%), Positives = 176/363 (48%), Gaps = 91/363 (25%)
Query: 7 RRTVSKSIGPTCPFA-GSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQ 65
RR + ++ CPF G+CE+++ RR C ACRL+KCL++GM+K+MI+S EA+ RRA
Sbjct: 66 RRAMKRNARLRCPFRKGACEITRKTRRQCQACRLRKCLESGMKKEMIMSDEAVEERRALI 125
Query: 66 AQRRAQQTPVQ------LSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQ-P 118
++++++T Q L++EQ +IR L+ A + T F F FR P L + P
Sbjct: 126 KRKKSERTGTQPLGVQGLTEEQRMMIRELMDAQMKTFDTTFSHFKNFRLPGVLSSGCELP 185
Query: 119 LPTLAP--------------------------------------------VLPLVTHFAD 134
AP + L+ H AD
Sbjct: 186 ESLQAPSREEAAKWSQVRKDLCSLKVSLQLRGEDGSVWNYKPPADSGGKEIFSLLPHMAD 245
Query: 135 INTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLR 194
++T+M +I F K + FR LPIEDQISLLKGAA E+C + NT F +T + CG L
Sbjct: 246 MSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAETGTWECGRLS 305
Query: 195 YTIEDGA--------------------------------------RDRPGVTQRDEIDQL 216
Y +ED A DRPGV Q +DQL
Sbjct: 306 YCLEDTAGGFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQL 365
Query: 217 QEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAM-MPLL 275
QE+ A+TL+SYI+ + +P RFL+ K++ +L ELRSIN + ++ IQ + PL+
Sbjct: 366 QEQFAITLKSYIECNRPQPAHRFLFLKIMAMLTELRSINAQHTQRLLRIQDIHPFATPLM 425
Query: 276 QEI 278
QE+
Sbjct: 426 QEL 428
>gi|189491771 thyroid hormone receptor, beta [Homo sapiens]
Length = 461
Score = 94.0 bits (232), Expect = 1e-19
Identities = 84/318 (26%), Positives = 133/318 (41%), Gaps = 64/318 (20%)
Query: 7 RRTVSKSIGPT--CPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAK 64
RRT+ K++ P+ C + G C + K R C CR +KC+ GM D++L +R
Sbjct: 132 RRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKL 191
Query: 65 QAQRRAQQTPVQLSK----------EQEELIRTLLGAH--TRHMGTMFEQFVQFRPPAHL 112
+ R ++ +L K E+ ELI+T+ AH T G+ ++Q +F P
Sbjct: 192 IEENREKRRREELQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPED-- 249
Query: 113 FIHHQPLPTLAPV-----LPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKG 167
I P+ AP L +HF I T + +V+ F K LP+F LP EDQI LLKG
Sbjct: 250 -IGQAPIVN-APEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKG 307
Query: 168 AAVEICH-------------IVLNTTFCLQTQNFLCGPL---------------RYTIED 199
+EI + LN + G L + ++D
Sbjct: 308 CCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDD 367
Query: 200 G-----------ARDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLL 248
+ DRPG+ + I++ Q+ L + YI R+ + KLL +
Sbjct: 368 TEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYI--NYRKHHVTHFWPKLLMKV 425
Query: 249 AELRSINEAYGYQIQHIQ 266
+LR I + + H++
Sbjct: 426 TDLRMIGACHASRFLHMK 443
>gi|189491769 thyroid hormone receptor, beta [Homo sapiens]
Length = 461
Score = 94.0 bits (232), Expect = 1e-19
Identities = 84/318 (26%), Positives = 133/318 (41%), Gaps = 64/318 (20%)
Query: 7 RRTVSKSIGPT--CPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAK 64
RRT+ K++ P+ C + G C + K R C CR +KC+ GM D++L +R
Sbjct: 132 RRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKL 191
Query: 65 QAQRRAQQTPVQLSK----------EQEELIRTLLGAH--TRHMGTMFEQFVQFRPPAHL 112
+ R ++ +L K E+ ELI+T+ AH T G+ ++Q +F P
Sbjct: 192 IEENREKRRREELQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPED-- 249
Query: 113 FIHHQPLPTLAPV-----LPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKG 167
I P+ AP L +HF I T + +V+ F K LP+F LP EDQI LLKG
Sbjct: 250 -IGQAPIVN-APEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKG 307
Query: 168 AAVEICH-------------IVLNTTFCLQTQNFLCGPL---------------RYTIED 199
+EI + LN + G L + ++D
Sbjct: 308 CCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDD 367
Query: 200 G-----------ARDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLL 248
+ DRPG+ + I++ Q+ L + YI R+ + KLL +
Sbjct: 368 TEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYI--NYRKHHVTHFWPKLLMKV 425
Query: 249 AELRSINEAYGYQIQHIQ 266
+LR I + + H++
Sbjct: 426 TDLRMIGACHASRFLHMK 443
>gi|40806162 thyroid hormone receptor, beta [Homo sapiens]
Length = 461
Score = 94.0 bits (232), Expect = 1e-19
Identities = 84/318 (26%), Positives = 133/318 (41%), Gaps = 64/318 (20%)
Query: 7 RRTVSKSIGPT--CPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAK 64
RRT+ K++ P+ C + G C + K R C CR +KC+ GM D++L +R
Sbjct: 132 RRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSKRLAKRKL 191
Query: 65 QAQRRAQQTPVQLSK----------EQEELIRTLLGAH--TRHMGTMFEQFVQFRPPAHL 112
+ R ++ +L K E+ ELI+T+ AH T G+ ++Q +F P
Sbjct: 192 IEENREKRRREELQKSIGHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPED-- 249
Query: 113 FIHHQPLPTLAPV-----LPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKG 167
I P+ AP L +HF I T + +V+ F K LP+F LP EDQI LLKG
Sbjct: 250 -IGQAPIVN-APEGGKVDLEAFSHFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKG 307
Query: 168 AAVEICH-------------IVLNTTFCLQTQNFLCGPL---------------RYTIED 199
+EI + LN + G L + ++D
Sbjct: 308 CCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDD 367
Query: 200 G-----------ARDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLL 248
+ DRPG+ + I++ Q+ L + YI R+ + KLL +
Sbjct: 368 TEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYI--NYRKHHVTHFWPKLLMKV 425
Query: 249 AELRSINEAYGYQIQHIQ 266
+LR I + + H++
Sbjct: 426 TDLRMIGACHASRFLHMK 443
>gi|194294519 nuclear receptor subfamily 1, group H, member 3
isoform c [Homo sapiens]
Length = 402
Score = 89.7 bits (221), Expect = 3e-18
Identities = 82/327 (25%), Positives = 134/327 (40%), Gaps = 62/327 (18%)
Query: 7 RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 66
RR+V K C G C + RR C CRL+KC AGMR++ +LS E + L++ K+
Sbjct: 78 RRSVIKGAHYICHSGGHCPMDTYMRRKCQECRLRKCRQAGMREECVLSEEQIRLKKLKRQ 137
Query: 67 QR----------RAQQTP---VQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRP-PAHL 112
+ RA P QLS EQ +I L+ A + F ++ P P
Sbjct: 138 EEEQAHATSLPPRASSPPQILPQLSPEQLGMIEKLVAAQQQCNRRSFSDRLRVTPWPMAP 197
Query: 113 FIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEI 172
H + HF ++ V +++ F K LP F L EDQI+LLK +A+E+
Sbjct: 198 DPHSREARQ-----QRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEV 252
Query: 173 CHIVLNTTFCLQTQNF-LCGPLRYTIEDGAR----------------------------- 202
+ + + +++ Y ED A+
Sbjct: 253 MLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFA 312
Query: 203 ----------DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELR 252
DRP V + ++++LQ L +Y+ P DR ++ ++L L LR
Sbjct: 313 LLIAISIFSADRPNVQDQLQVERLQHTYVEALHAYV--SIHHPHDRLMFPRMLMKLVSLR 370
Query: 253 SINEAYGYQIQHIQGLSAMM-PLLQEI 278
+++ + Q+ ++ + PLL EI
Sbjct: 371 TLSSVHSEQVFALRLQDKKLPPLLSEI 397
>gi|194294517 nuclear receptor subfamily 1, group H, member 3
isoform a [Homo sapiens]
Length = 447
Score = 89.7 bits (221), Expect = 3e-18
Identities = 82/327 (25%), Positives = 134/327 (40%), Gaps = 62/327 (18%)
Query: 7 RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 66
RR+V K C G C + RR C CRL+KC AGMR++ +LS E + L++ K+
Sbjct: 123 RRSVIKGAHYICHSGGHCPMDTYMRRKCQECRLRKCRQAGMREECVLSEEQIRLKKLKRQ 182
Query: 67 QR----------RAQQTP---VQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRP-PAHL 112
+ RA P QLS EQ +I L+ A + F ++ P P
Sbjct: 183 EEEQAHATSLPPRASSPPQILPQLSPEQLGMIEKLVAAQQQCNRRSFSDRLRVTPWPMAP 242
Query: 113 FIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEI 172
H + HF ++ V +++ F K LP F L EDQI+LLK +A+E+
Sbjct: 243 DPHSREARQ-----QRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEV 297
Query: 173 CHIVLNTTFCLQTQNF-LCGPLRYTIEDGAR----------------------------- 202
+ + + +++ Y ED A+
Sbjct: 298 MLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFA 357
Query: 203 ----------DRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELR 252
DRP V + ++++LQ L +Y+ P DR ++ ++L L LR
Sbjct: 358 LLIAISIFSADRPNVQDQLQVERLQHTYVEALHAYV--SIHHPHDRLMFPRMLMKLVSLR 415
Query: 253 SINEAYGYQIQHIQGLSAMM-PLLQEI 278
+++ + Q+ ++ + PLL EI
Sbjct: 416 TLSSVHSEQVFALRLQDKKLPPLLSEI 442
>gi|223718064 retinoic acid receptor, alpha isoform 1 [Homo sapiens]
Length = 462
Score = 87.8 bits (216), Expect = 1e-17
Identities = 80/315 (25%), Positives = 137/315 (43%), Gaps = 57/315 (18%)
Query: 7 RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 66
RR++ K++ TC +C ++K R C CRLQKC + GM K+ + + ++ K+
Sbjct: 113 RRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN---KKKKEV 169
Query: 67 QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 126
+ L+ E ELI + AH E F ++ ++ +
Sbjct: 170 PKPECSESYTLTPEVGELIEKVRKAHQ-------ETFPALCQLGKYTTNNSSEQRVSLDI 222
Query: 127 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFC---- 182
L F++++T +++ ++F K LP F +L I DQI+LLK A ++I + + T +
Sbjct: 223 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQD 282
Query: 183 ------------LQTQNFLCGPLRYTI---------------EDG--------ARDRPGV 207
Q N GPL + E G DR +
Sbjct: 283 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDL 342
Query: 208 TQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQI----Q 263
Q D +D LQE + L+ Y++ +RRP ++ K+L + +LRSI+ ++
Sbjct: 343 EQPDRVDMLQEPLLEALKVYVR--KRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKM 400
Query: 264 HIQGLSAMMPLLQEI 278
I G +M PL+QE+
Sbjct: 401 EIPG--SMPPLIQEM 413
>gi|67459914 retinoic acid receptor, alpha isoform 2 [Homo sapiens]
Length = 457
Score = 87.8 bits (216), Expect = 1e-17
Identities = 80/315 (25%), Positives = 137/315 (43%), Gaps = 57/315 (18%)
Query: 7 RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 66
RR++ K++ TC +C ++K R C CRLQKC + GM K+ + + ++ K+
Sbjct: 108 RRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN---KKKKEV 164
Query: 67 QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 126
+ L+ E ELI + AH E F ++ ++ +
Sbjct: 165 PKPECSESYTLTPEVGELIEKVRKAHQ-------ETFPALCQLGKYTTNNSSEQRVSLDI 217
Query: 127 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFC---- 182
L F++++T +++ ++F K LP F +L I DQI+LLK A ++I + + T +
Sbjct: 218 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQD 277
Query: 183 ------------LQTQNFLCGPLRYTI---------------EDG--------ARDRPGV 207
Q N GPL + E G DR +
Sbjct: 278 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDL 337
Query: 208 TQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQI----Q 263
Q D +D LQE + L+ Y++ +RRP ++ K+L + +LRSI+ ++
Sbjct: 338 EQPDRVDMLQEPLLEALKVYVR--KRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKM 395
Query: 264 HIQGLSAMMPLLQEI 278
I G +M PL+QE+
Sbjct: 396 EIPG--SMPPLIQEM 408
>gi|4506419 retinoic acid receptor, alpha isoform 1 [Homo sapiens]
Length = 462
Score = 87.8 bits (216), Expect = 1e-17
Identities = 80/315 (25%), Positives = 137/315 (43%), Gaps = 57/315 (18%)
Query: 7 RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 66
RR++ K++ TC +C ++K R C CRLQKC + GM K+ + + ++ K+
Sbjct: 113 RRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRN---KKKKEV 169
Query: 67 QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 126
+ L+ E ELI + AH E F ++ ++ +
Sbjct: 170 PKPECSESYTLTPEVGELIEKVRKAHQ-------ETFPALCQLGKYTTNNSSEQRVSLDI 222
Query: 127 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFC---- 182
L F++++T +++ ++F K LP F +L I DQI+LLK A ++I + + T +
Sbjct: 223 DLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQD 282
Query: 183 ------------LQTQNFLCGPLRYTI---------------EDG--------ARDRPGV 207
Q N GPL + E G DR +
Sbjct: 283 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDL 342
Query: 208 TQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQI----Q 263
Q D +D LQE + L+ Y++ +RRP ++ K+L + +LRSI+ ++
Sbjct: 343 EQPDRVDMLQEPLLEALKVYVR--KRRPSRPHMFPKMLMKITDLRSISAKGAERVITLKM 400
Query: 264 HIQGLSAMMPLLQEI 278
I G +M PL+QE+
Sbjct: 401 EIPG--SMPPLIQEM 413
>gi|63054845 vitamin D (1,25-dihydroxyvitamin D3) receptor [Homo
sapiens]
Length = 427
Score = 87.4 bits (215), Expect = 1e-17
Identities = 42/111 (37%), Positives = 65/111 (58%), Gaps = 5/111 (4%)
Query: 7 RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 66
RR++ + TCPF G C ++K RRHC ACRL++C+D GM K+ IL+ E + +R
Sbjct: 49 RRSMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMIL 108
Query: 67 QRRAQQT-----PVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHL 112
+R+ ++ +LS+EQ+ +I LL AH + + F QFRPP +
Sbjct: 109 KRKEEEALKDSLRPKLSEEQQRIIAILLDAHHKTYDPTYSDFCQFRPPVRV 159
Score = 82.0 bits (201), Expect = 5e-16
Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 41/177 (23%)
Query: 126 LPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQT 185
L ++ H AD+ ++ + +VI F K +P FR L EDQI LLK +A+E+ + N +F +
Sbjct: 224 LSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDD 283
Query: 186 QNFLCG--PLRYTIEDGAR---------------------------------------DR 204
++ CG +Y + D + DR
Sbjct: 284 MSWTCGNQDYKYRVSDVTKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDR 343
Query: 205 PGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQ 261
PGV I+ +Q+ ++ TLQ+YI+ + P LYAK++ LA+LRS+NE + Q
Sbjct: 344 PGVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQ 400
>gi|4507883 vitamin D (1,25-dihydroxyvitamin D3) receptor [Homo
sapiens]
Length = 427
Score = 87.4 bits (215), Expect = 1e-17
Identities = 42/111 (37%), Positives = 65/111 (58%), Gaps = 5/111 (4%)
Query: 7 RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 66
RR++ + TCPF G C ++K RRHC ACRL++C+D GM K+ IL+ E + +R
Sbjct: 49 RRSMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMIL 108
Query: 67 QRRAQQT-----PVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHL 112
+R+ ++ +LS+EQ+ +I LL AH + + F QFRPP +
Sbjct: 109 KRKEEEALKDSLRPKLSEEQQRIIAILLDAHHKTYDPTYSDFCQFRPPVRV 159
Score = 82.0 bits (201), Expect = 5e-16
Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 41/177 (23%)
Query: 126 LPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQT 185
L ++ H AD+ ++ + +VI F K +P FR L EDQI LLK +A+E+ + N +F +
Sbjct: 224 LSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDD 283
Query: 186 QNFLCG--PLRYTIEDGAR---------------------------------------DR 204
++ CG +Y + D + DR
Sbjct: 284 MSWTCGNQDYKYRVSDVTKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDR 343
Query: 205 PGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQ 261
PGV I+ +Q+ ++ TLQ+YI+ + P LYAK++ LA+LRS+NE + Q
Sbjct: 344 PGVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQ 400
>gi|40806160 thyroid hormone receptor, alpha isoform 1 [Homo
sapiens]
Length = 410
Score = 86.3 bits (212), Expect = 3e-17
Identities = 80/317 (25%), Positives = 131/317 (41%), Gaps = 62/317 (19%)
Query: 7 RRTVSKSIGPT--CPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILS---------- 54
RRT+ K++ PT C + C + K R C CR +KC+ GM D++L
Sbjct: 78 RRTIQKNLHPTYSCKYDSCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKL 137
Query: 55 AEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGAH--TRHMGTMFEQFVQFRPPAHL 112
E RR K+ R+ Q + + E+ +LI AH T G+ ++Q +F P
Sbjct: 138 IEQNRERRRKEEMIRSLQQRPEPTPEEWDLIHIATEAHRSTNAQGSHWKQRRKFLPDD-- 195
Query: 113 FIHHQPLPTLAPV----LPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGA 168
I P+ ++ L + F I T + +V+ F K LP+F LP EDQI LLKG
Sbjct: 196 -IGQSPIVSMPDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSELPCEDQIILLKGC 254
Query: 169 AVEICH-------------IVLNTTFCLQTQNFLCGPL---------------RYTIEDG 200
+EI + L+ ++ + G L + ++D
Sbjct: 255 CMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAFNLDDT 314
Query: 201 -----------ARDRPGVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLA 249
+ DR G+ D+I++ QE L + Y+ R+ + KLL +
Sbjct: 315 EVALLQAVLLMSTDRSGLLCVDKIEKSQEAYLLAFEHYV--NHRKHNIPHFWPKLLMKVT 372
Query: 250 ELRSINEAYGYQIQHIQ 266
+LR I + + H++
Sbjct: 373 DLRMIGACHASRFLHMK 389
>gi|112181200 retinoic acid receptor, gamma isoform 2 [Homo sapiens]
Length = 443
Score = 84.3 bits (207), Expect = 1e-16
Identities = 71/288 (24%), Positives = 125/288 (43%), Gaps = 51/288 (17%)
Query: 7 RRTVSKSIGPTCPFAGSCEVSKTQRRHCPACRLQKCLDAGMRKDMILSAEALALRRAKQA 66
RR++ K++ TC +C ++K R C CRLQKC + GM K+ + + ++ K+
Sbjct: 104 RRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRN---KKKKEV 160
Query: 67 QRRAQQTPVQLSKEQEELIRTLLGAHTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVL 126
+ +LS + EELI + AH E F + + L
Sbjct: 161 KEEGSPDSYELSPQLEELITKVSKAHQ-------ETFPSLCQLGKYTTNSSADHRVQLDL 213
Query: 127 PLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFC---- 182
L F+++ T ++++++F K LP F L I DQI+LLK A ++I + + T +
Sbjct: 214 GLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQD 273
Query: 183 ------------LQTQNFLCGPLRYTI---------------EDG--------ARDRPGV 207
Q N GPL + E G DR +
Sbjct: 274 TMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDL 333
Query: 208 TQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLYAKLLGLLAELRSIN 255
+ +++D+LQE + L+ Y ++RRP +++ ++L + +LR I+
Sbjct: 334 EEPEKVDKLQEPLLEALRLY--ARRRRPSQPYMFPRMLMKITDLRGIS 379
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.138 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,112,548
Number of Sequences: 37866
Number of extensions: 431232
Number of successful extensions: 1967
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1688
Number of HSP's gapped (non-prelim): 242
length of query: 280
length of database: 18,247,518
effective HSP length: 101
effective length of query: 179
effective length of database: 14,423,052
effective search space: 2581726308
effective search space used: 2581726308
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.