Guide to the Human Genome
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Name: C6orf163 Sequence: fasta or formatted (203aa) NCBI GI: 239748909
Description:

PREDICTED: chromosome 6 open reading frame 163

Not currently referenced in the text

Other entries for this name:
alt mRNA {203aa} PREDICTED: hypothetical protein LOC206412
alt mRNA {203aa} PREDICTED: chromosome 6 open reading frame 163
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         17           2
 C cysteine            0.5          1           1
 D aspartate           3.4          7           2
 E glutamate          13.8         28           3
 F phenylalanine       2.0          4           1
 G glycine             3.0          6           1
 H histidine           3.4          7           1
 I isoleucine          6.4         13           1
 K lysine              8.9         18           2
 L leucine             7.4         15           2
 M methionine          5.9         12           2
 N asparagine          3.9          8           1
 P proline             2.0          4           1
 Q glutamine           7.9         16           1
 R arginine            6.4         13           1
 S serine              3.0          6           1
 T threonine           5.9         12           2
 V valine              5.4         11           1
 W tryptophan          0.5          1           1
 Y tyrosine            2.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: chromosome 6 open reading frame 163 [Hom... 
C6orf163              1.000   PREDICTED: chromosome 6 open reading frame 163 [Hom...
C6orf163              1.000   PREDICTED: hypothetical protein LOC206412 
ERC1                  0.053   RAB6-interacting protein 2 isoform delta 
CDC42BPB              0.045   CDC42-binding protein kinase beta 
MYH9                  0.045   myosin, heavy polypeptide 9, non-muscle 
CEP250                0.045   centrosomal protein 2 
CCDC91                0.045   GGA binding partner 
CDC42BPA              0.043   CDC42-binding protein kinase alpha isoform B 
CEP164                0.040   centrosomal protein 164kDa 
GOLGB1                0.040   golgi autoantigen, golgin subfamily b, macrogolgin ...
WDR87                 0.040   NYD-SP11 protein 
SYCP1                 0.037   synaptonemal complex protein 1 
MAP7D1                0.037   MAP7 domain containing 1 
PLEC1                 0.037   plectin 1 isoform 11 
PLEC1                 0.037   plectin 1 isoform 10 
PLEC1                 0.037   plectin 1 isoform 8 
PLEC1                 0.037   plectin 1 isoform 7 
PLEC1                 0.037   plectin 1 isoform 6 
PLEC1                 0.037   plectin 1 isoform 3 
PLEC1                 0.037   plectin 1 isoform 2 
PLEC1                 0.037   plectin 1 isoform 1 
CGNL1                 0.035   cingulin-like 1 
ARGLU1                0.035   arginine and glutamate rich 1 
MAP7                  0.035   microtubule-associated protein 7 
GOLGA4                0.032   golgi autoantigen, golgin subfamily a, 4 
SLK                   0.032   serine/threonine kinase 2 
DCTN1                 0.032   dynactin 1 isoform 4 
DCTN1                 0.032   dynactin 1 isoform 3 
DCTN1                 0.032   dynactin 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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