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Search of human proteins with 239748617
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748617 PREDICTED: hypothetical protein XP_002346744 [Homo
sapiens]
(217 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754132 PREDICTED: hypothetical protein [Homo sapiens] 434 e-122
gi|239748617 PREDICTED: hypothetical protein XP_002346744 [Homo ... 434 e-122
gi|239742644 PREDICTED: hypothetical protein XP_002342602 [Homo ... 434 e-122
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 46 2e-05
gi|169212744 PREDICTED: hypothetical protein [Homo sapiens] 46 2e-05
gi|29826341 calmodulin binding transcription activator 2 [Homo s... 42 4e-04
gi|153281158 dual specificity phosphatase 8 [Homo sapiens] 41 7e-04
gi|239753749 PREDICTED: hypothetical protein [Homo sapiens] 40 0.001
gi|239748226 PREDICTED: hypothetical protein [Homo sapiens] 40 0.001
gi|239742127 PREDICTED: hypothetical protein [Homo sapiens] 40 0.001
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap... 40 0.002
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi... 40 0.002
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi... 40 0.002
gi|166795252 hypothetical protein LOC23359 [Homo sapiens] 40 0.002
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 40 0.002
gi|239756433 PREDICTED: hypothetical protein [Homo sapiens] 39 0.004
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 39 0.004
gi|239750970 PREDICTED: hypothetical protein XP_002347634 [Homo ... 39 0.004
gi|239745376 PREDICTED: hypothetical protein XP_002343484 [Homo ... 39 0.004
gi|110832843 TBP-associated factor 4 [Homo sapiens] 39 0.004
gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens] 38 0.006
gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens] 38 0.006
gi|194018488 peroxisomal biogenesis factor 6 [Homo sapiens] 37 0.010
gi|239741753 PREDICTED: hypothetical protein [Homo sapiens] 37 0.013
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 37 0.017
gi|113416171 PREDICTED: hypothetical protein [Homo sapiens] 37 0.017
gi|169166294 PREDICTED: hypothetical protein [Homo sapiens] 37 0.017
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 36 0.022
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens] 36 0.022
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 35 0.038
>gi|239754132 PREDICTED: hypothetical protein [Homo sapiens]
Length = 217
Score = 434 bits (1117), Expect = e-122
Identities = 217/217 (100%), Positives = 217/217 (100%)
Query: 1 MRGEPKRVCSSVMAVSEASFTKRICKGGSNVKLIQLLAELFPRQPVRASSTSSRLLRAPA 60
MRGEPKRVCSSVMAVSEASFTKRICKGGSNVKLIQLLAELFPRQPVRASSTSSRLLRAPA
Sbjct: 1 MRGEPKRVCSSVMAVSEASFTKRICKGGSNVKLIQLLAELFPRQPVRASSTSSRLLRAPA 60
Query: 61 PPPRLKIHAGPALSPDSGQARPSPKSGRRPRRRVGKPGEHGAFSLVRRGLLRSCGGHLTP 120
PPPRLKIHAGPALSPDSGQARPSPKSGRRPRRRVGKPGEHGAFSLVRRGLLRSCGGHLTP
Sbjct: 61 PPPRLKIHAGPALSPDSGQARPSPKSGRRPRRRVGKPGEHGAFSLVRRGLLRSCGGHLTP 120
Query: 121 HARVLSSGGTASAARSGVPAGSADAVPGISRAGPGSPSMLLPAGSLLLTAERSFTWGGRR 180
HARVLSSGGTASAARSGVPAGSADAVPGISRAGPGSPSMLLPAGSLLLTAERSFTWGGRR
Sbjct: 121 HARVLSSGGTASAARSGVPAGSADAVPGISRAGPGSPSMLLPAGSLLLTAERSFTWGGRR 180
Query: 181 GTEKNPPGKWTGLAPGPGAAALGPSDLPRVASLSSVF 217
GTEKNPPGKWTGLAPGPGAAALGPSDLPRVASLSSVF
Sbjct: 181 GTEKNPPGKWTGLAPGPGAAALGPSDLPRVASLSSVF 217
>gi|239748617 PREDICTED: hypothetical protein XP_002346744 [Homo
sapiens]
Length = 217
Score = 434 bits (1117), Expect = e-122
Identities = 217/217 (100%), Positives = 217/217 (100%)
Query: 1 MRGEPKRVCSSVMAVSEASFTKRICKGGSNVKLIQLLAELFPRQPVRASSTSSRLLRAPA 60
MRGEPKRVCSSVMAVSEASFTKRICKGGSNVKLIQLLAELFPRQPVRASSTSSRLLRAPA
Sbjct: 1 MRGEPKRVCSSVMAVSEASFTKRICKGGSNVKLIQLLAELFPRQPVRASSTSSRLLRAPA 60
Query: 61 PPPRLKIHAGPALSPDSGQARPSPKSGRRPRRRVGKPGEHGAFSLVRRGLLRSCGGHLTP 120
PPPRLKIHAGPALSPDSGQARPSPKSGRRPRRRVGKPGEHGAFSLVRRGLLRSCGGHLTP
Sbjct: 61 PPPRLKIHAGPALSPDSGQARPSPKSGRRPRRRVGKPGEHGAFSLVRRGLLRSCGGHLTP 120
Query: 121 HARVLSSGGTASAARSGVPAGSADAVPGISRAGPGSPSMLLPAGSLLLTAERSFTWGGRR 180
HARVLSSGGTASAARSGVPAGSADAVPGISRAGPGSPSMLLPAGSLLLTAERSFTWGGRR
Sbjct: 121 HARVLSSGGTASAARSGVPAGSADAVPGISRAGPGSPSMLLPAGSLLLTAERSFTWGGRR 180
Query: 181 GTEKNPPGKWTGLAPGPGAAALGPSDLPRVASLSSVF 217
GTEKNPPGKWTGLAPGPGAAALGPSDLPRVASLSSVF
Sbjct: 181 GTEKNPPGKWTGLAPGPGAAALGPSDLPRVASLSSVF 217
>gi|239742644 PREDICTED: hypothetical protein XP_002342602 [Homo
sapiens]
Length = 217
Score = 434 bits (1117), Expect = e-122
Identities = 217/217 (100%), Positives = 217/217 (100%)
Query: 1 MRGEPKRVCSSVMAVSEASFTKRICKGGSNVKLIQLLAELFPRQPVRASSTSSRLLRAPA 60
MRGEPKRVCSSVMAVSEASFTKRICKGGSNVKLIQLLAELFPRQPVRASSTSSRLLRAPA
Sbjct: 1 MRGEPKRVCSSVMAVSEASFTKRICKGGSNVKLIQLLAELFPRQPVRASSTSSRLLRAPA 60
Query: 61 PPPRLKIHAGPALSPDSGQARPSPKSGRRPRRRVGKPGEHGAFSLVRRGLLRSCGGHLTP 120
PPPRLKIHAGPALSPDSGQARPSPKSGRRPRRRVGKPGEHGAFSLVRRGLLRSCGGHLTP
Sbjct: 61 PPPRLKIHAGPALSPDSGQARPSPKSGRRPRRRVGKPGEHGAFSLVRRGLLRSCGGHLTP 120
Query: 121 HARVLSSGGTASAARSGVPAGSADAVPGISRAGPGSPSMLLPAGSLLLTAERSFTWGGRR 180
HARVLSSGGTASAARSGVPAGSADAVPGISRAGPGSPSMLLPAGSLLLTAERSFTWGGRR
Sbjct: 121 HARVLSSGGTASAARSGVPAGSADAVPGISRAGPGSPSMLLPAGSLLLTAERSFTWGGRR 180
Query: 181 GTEKNPPGKWTGLAPGPGAAALGPSDLPRVASLSSVF 217
GTEKNPPGKWTGLAPGPGAAALGPSDLPRVASLSSVF
Sbjct: 181 GTEKNPPGKWTGLAPGPGAAALGPSDLPRVASLSSVF 217
>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 46.2 bits (108), Expect = 2e-05
Identities = 45/126 (35%), Positives = 52/126 (41%), Gaps = 18/126 (14%)
Query: 42 PRQPVRASSTSSRLLRAPAPPPRLKIHAGPALSPDSGQARPS-PKSGRRPRRRVGKPGEH 100
PR V A + S L R APPP A P P G +R P++G RP V PG
Sbjct: 48 PRGAVSAGAPGSPLYRVSAPPP-----APPPPPPPGGPSRSERPRAGLRPGAFVS-PGPL 101
Query: 101 GAFSLVRRGLLRSCGGHLTPHARVLSSGGTASAARSGVPAGSADAVPGIS--RAGPGSPS 158
G RR SC G R+ S SAA+ G PA A P + GP SP
Sbjct: 102 G-----RRA---SCSGRAGSAGRLRCSAAALSAAQRGGPA-RAQVPPALRTFSPGPASPP 152
Query: 159 MLLPAG 164
P G
Sbjct: 153 RASPGG 158
>gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 46.2 bits (108), Expect = 2e-05
Identities = 45/126 (35%), Positives = 52/126 (41%), Gaps = 18/126 (14%)
Query: 42 PRQPVRASSTSSRLLRAPAPPPRLKIHAGPALSPDSGQARPS-PKSGRRPRRRVGKPGEH 100
PR V A + S L R APPP A P P G +R P++G RP V PG
Sbjct: 48 PRGAVSAGAPGSPLYRVSAPPP-----APPPPPPPGGPSRSERPRAGLRPGAFVS-PGPL 101
Query: 101 GAFSLVRRGLLRSCGGHLTPHARVLSSGGTASAARSGVPAGSADAVPGIS--RAGPGSPS 158
G RR SC G R+ S SAA+ G PA A P + GP SP
Sbjct: 102 G-----RRA---SCSGRAGSAGRLRCSAAALSAAQRGGPA-RAQVPPALRTFSPGPASPP 152
Query: 159 MLLPAG 164
P G
Sbjct: 153 RASPGG 158
>gi|29826341 calmodulin binding transcription activator 2 [Homo
sapiens]
Length = 1202
Score = 42.0 bits (97), Expect = 4e-04
Identities = 45/167 (26%), Positives = 59/167 (35%), Gaps = 31/167 (18%)
Query: 56 LRAPAPPPRLKIHAGPALSPDSG--------QARPSPKSGRRPRRRVGKPGEHGAFSLVR 107
L AP PP K H P+ S S + RPSP + R G G L+
Sbjct: 275 LIAPLPPELPKAHTSPSSSSSSSSSGFAEPLEIRPSPPTSR------GGSSRGGTAILLL 328
Query: 108 RGLLRSCGGHLTPHARVLSSGGTASAARSGVPAGSADAVPGISRAGPGSPSMLLPAGSLL 167
GL + GG LTP + + V G+ + P P PS L
Sbjct: 329 TGLEQRAGG-LTPTRHLAPQADPRPSMSLAVVVGTEPSAP------PAPPSPAFDPDRFL 381
Query: 168 LTAERSFTWGGRRGTEKNPPGKWTGLAP----------GPGAAALGP 204
+ +R T+GG +G + P P P AAA GP
Sbjct: 382 NSPQRGQTYGGGQGVSPDFPEAEAAHTPCSALEPAAALEPQAAARGP 428
>gi|153281158 dual specificity phosphatase 8 [Homo sapiens]
Length = 625
Score = 41.2 bits (95), Expect = 7e-04
Identities = 53/179 (29%), Positives = 68/179 (37%), Gaps = 33/179 (18%)
Query: 46 VRASSTSSRLLRAPAPPP--------RLKIHAGPAL-----SPDSGQARPS--PKSGRRP 90
++++ SR P PP +L +G AL SPDS A P P+ RRP
Sbjct: 398 IKSAYAPSRRPDGPGPPDPGEAPKLCKLDSPSGAALGLSSPSPDSPDAAPEARPRPRRRP 457
Query: 91 RRRVGKPGEHGAFSLVRRGLLRSCGGHLTPHARVLSSGGTASAARSGVPAGSADAVPGIS 150
R G P A SL G + AR G ++ + G+P A PG
Sbjct: 458 RPPAGSPARSPAHSL---------GLNFGDAARQTPRHGLSALSAPGLPGPGQPAGPGAW 508
Query: 151 RAGPGSPSMLLPAGSLLLTAERSFTWGGRRGTEKNPPGKWTGLAPGPGAAALGPSDLPR 209
SP P G + E + G G P G+ APGPG G SDL R
Sbjct: 509 APPLDSPGTPSPDGPWCFSPEGA---QGAGGVLFAPFGR--AGAPGPG----GGSDLRR 558
>gi|239753749 PREDICTED: hypothetical protein [Homo sapiens]
Length = 148
Score = 40.4 bits (93), Expect = 0.001
Identities = 33/91 (36%), Positives = 36/91 (39%), Gaps = 10/91 (10%)
Query: 47 RASSTSSRLLRAPAPPPRLKIHAGPALSPDSGQARPSPKSGRRPRRRVGKPGEHGAFSLV 106
R S S R PPPR PA+ D G ARP PR R G PG H + S
Sbjct: 58 RESCGSQGAPRGRRPPPR------PAVPADHGSARPPGCCLASPRIRQGSPGAHQSASAS 111
Query: 107 RRGLLRSCGGHLTPHARVLSSGGTASAARSG 137
RG G H RV G + A SG
Sbjct: 112 ERGGSWDWQG----HPRVAPQGRCKARAESG 138
>gi|239748226 PREDICTED: hypothetical protein [Homo sapiens]
Length = 148
Score = 40.4 bits (93), Expect = 0.001
Identities = 33/91 (36%), Positives = 36/91 (39%), Gaps = 10/91 (10%)
Query: 47 RASSTSSRLLRAPAPPPRLKIHAGPALSPDSGQARPSPKSGRRPRRRVGKPGEHGAFSLV 106
R S S R PPPR PA+ D G ARP PR R G PG H + S
Sbjct: 58 RESCGSQGAPRGRRPPPR------PAVPADHGSARPPGCCLASPRIRQGSPGAHQSASAS 111
Query: 107 RRGLLRSCGGHLTPHARVLSSGGTASAARSG 137
RG G H RV G + A SG
Sbjct: 112 ERGGSWDWQG----HPRVAPQGRCKARAESG 138
>gi|239742127 PREDICTED: hypothetical protein [Homo sapiens]
Length = 148
Score = 40.4 bits (93), Expect = 0.001
Identities = 33/91 (36%), Positives = 36/91 (39%), Gaps = 10/91 (10%)
Query: 47 RASSTSSRLLRAPAPPPRLKIHAGPALSPDSGQARPSPKSGRRPRRRVGKPGEHGAFSLV 106
R S S R PPPR PA+ D G ARP PR R G PG H + S
Sbjct: 58 RESCGSQGAPRGRRPPPR------PAVPADHGSARPPGCCLASPRIRQGSPGAHQSASAS 111
Query: 107 RRGLLRSCGGHLTPHARVLSSGGTASAARSG 137
RG G H RV G + A SG
Sbjct: 112 ERGGSWDWQG----HPRVAPQGRCKARAESG 138
>gi|111120318 NK6 transcription factor related, locus 1 [Homo
sapiens]
Length = 367
Score = 40.0 bits (92), Expect = 0.002
Identities = 41/162 (25%), Positives = 62/162 (38%), Gaps = 17/162 (10%)
Query: 41 FPRQPVRASSTSSRLLRAPAPPPRLKIHAGPALSPDSGQARPSPKSGRRPRRRVGKPGEH 100
+P P S+SS + +P P L H L P + S S P +++ H
Sbjct: 40 YPPLPAGPPSSSSSSSSSSSPSPPLGTHNPGGLKPPATGGLSSLGS---PPQQLSAATPH 96
Query: 101 GAFSLVRRGLLRSCGGHLTPHARVLSSGGTASAARSGVPAGSADAVPGISRAGPGSPSML 160
G ++ R + G P A S ++S++ S A +A A + A SP+ L
Sbjct: 97 GINDILSRPSMPVASGAALPSASPSGSSSSSSSSASASSASAAAAAAAAAAAAASSPAGL 156
Query: 161 LPAGSLLLTAERSFTWGGRRGTEKNPPGKWTGLAPGPGAAAL 202
L G R + +PP GL P AAA+
Sbjct: 157 LA--------------GLPRFSSLSPPPPPPGLYFSPSAAAV 184
>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
sapiens]
Length = 678
Score = 40.0 bits (92), Expect = 0.002
Identities = 42/145 (28%), Positives = 57/145 (39%), Gaps = 28/145 (19%)
Query: 32 KLIQLLAELFPRQPVRASSTSSRLLRAPAPPPRLKIHAGPALSPDSGQARPSPKSGRRPR 91
++ +LL P R + R R P PPP P P A PSP + PR
Sbjct: 71 RVSRLLERFDPPAAPRRRGSPERA-RPPPPPP-------PPAPPRPPPAAPSPPAAPGPR 122
Query: 92 RRVGKPGEH----------GAFSLVRRGLLRSCGGHLTPHARVLSSGGTASAARSGVPAG 141
PG +F++ RGL R G AR+LS+G +A R+G
Sbjct: 123 GGGASPGARRSDFLQKTGSNSFTVHPRGLHRGAG------ARLLSNGHSAPEPRAGPANR 176
Query: 142 SADAVPGISRAGP----GSPSMLLP 162
A + PG + P G PS+ P
Sbjct: 177 LAGSPPGSGQWKPKVESGDPSLHPP 201
>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
sapiens]
Length = 650
Score = 40.0 bits (92), Expect = 0.002
Identities = 42/145 (28%), Positives = 57/145 (39%), Gaps = 28/145 (19%)
Query: 32 KLIQLLAELFPRQPVRASSTSSRLLRAPAPPPRLKIHAGPALSPDSGQARPSPKSGRRPR 91
++ +LL P R + R R P PPP P P A PSP + PR
Sbjct: 71 RVSRLLERFDPPAAPRRRGSPERA-RPPPPPP-------PPAPPRPPPAAPSPPAAPGPR 122
Query: 92 RRVGKPGEH----------GAFSLVRRGLLRSCGGHLTPHARVLSSGGTASAARSGVPAG 141
PG +F++ RGL R G AR+LS+G +A R+G
Sbjct: 123 GGGASPGARRSDFLQKTGSNSFTVHPRGLHRGAG------ARLLSNGHSAPEPRAGPANR 176
Query: 142 SADAVPGISRAGP----GSPSMLLP 162
A + PG + P G PS+ P
Sbjct: 177 LAGSPPGSGQWKPKVESGDPSLHPP 201
>gi|166795252 hypothetical protein LOC23359 [Homo sapiens]
Length = 539
Score = 39.7 bits (91), Expect = 0.002
Identities = 39/115 (33%), Positives = 47/115 (40%), Gaps = 11/115 (9%)
Query: 45 PVRASSTSSRLLRAPAPPPRLKIHAGPALSPDSGQARPSPKSGRRPRRRVGKPGEHGAFS 104
PV A STS + A P G + SPD P+P P V P + G S
Sbjct: 334 PVPADSTSLLVSEGTATP-------GSSPSPDGPVGAPAPSEPALPPGHVS-PEDPGMGS 385
Query: 105 LVRRGLLRSCGGHLTPHARVLSSGGTASAARSGVPAGSADAVPGISRAGPGSPSM 159
V+ G R P S G AS+ R P+ S D G+S A PGS SM
Sbjct: 386 QVQPGPGRVSRSTSDPTLCTSSMAGDASSHR---PSCSQDLEAGLSEAVPGSASM 437
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 39.7 bits (91), Expect = 0.002
Identities = 47/169 (27%), Positives = 63/169 (37%), Gaps = 21/169 (12%)
Query: 58 APAPPPRLKIHAGPALSPDSGQARPSPKSG----------------RRPRRRVGKPGEHG 101
+P+P R K A P G+ PSP+S RR RRR +
Sbjct: 340 SPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSS 399
Query: 102 AFSLVRRGLLRSCGGHLTPHARVLSSGGTASAARSGVPAGSADAVPGISR--AGPGSPSM 159
A + RRG R +R LS ++S + SG A PG R G G +
Sbjct: 400 ASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAK 459
Query: 160 LLPAGSLLLTAERSFTWGGRRGTEKNPPGKWTGLAPGPGAAALGPSDLP 208
P + + S GRRG P GK + +PGP + S P
Sbjct: 460 ERPPRARPASTSPSPGAHGRRG---GPEGKSSSRSPGPHPRSWSSSRSP 505
>gi|239756433 PREDICTED: hypothetical protein [Homo sapiens]
Length = 513
Score = 38.5 bits (88), Expect = 0.004
Identities = 41/132 (31%), Positives = 51/132 (38%), Gaps = 34/132 (25%)
Query: 59 PAPPPRLKIHAGPALSPDSGQARPSPKSGRRPRRRVGKPGE------------------- 99
P PPP AG S G+AR + G +G+PG+
Sbjct: 324 PPPPP-----AGCGSSAPIGEARRGER-GDHWLPALGRPGDWLAGLQPAFGVKRSLRKCA 377
Query: 100 HGAFSLVRRGLLRSCGGHLTPHARVLSSGGTA----SAARSGV-----PAGSADAVPGIS 150
G S R L C G LT RV+S G A + AR V PAG A+ G
Sbjct: 378 RGESSAGARPLFPGCRGPLTHWKRVVSLGDEALHGVTRARPAVHWPVSPAGMGGALAGAP 437
Query: 151 RAGPGSPSMLLP 162
R G G+PS +P
Sbjct: 438 REGAGAPSSAVP 449
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 38.5 bits (88), Expect = 0.004
Identities = 47/165 (28%), Positives = 58/165 (35%), Gaps = 22/165 (13%)
Query: 45 PVRASSTSSRLLRAPAPPPRLKIHAGPAL---SPDSGQARPSPKSGRRPRRRVGKPGEHG 101
P RAS + R PP R A SP G AR SP R G
Sbjct: 87 PARASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPAGVERAGGATAASSA-G 145
Query: 102 AFSLVRRGLLRSCGG-HLTPHARVLSSGGTASAARSGVPAGSADAVPGISRAGPGSPSML 160
S+ R L CGG L +R L G+A+ RS + A+PG PG+P
Sbjct: 146 TRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPG-T 204
Query: 161 LPAGSLLLTAERSFTWGGRRGTEKNPPGKWTGLAPGPGAAALGPS 205
P G + PP +AP P A A P+
Sbjct: 205 WPVGFAVAA----------------PPAAAASVAPPPPAVAGAPA 233
>gi|239750970 PREDICTED: hypothetical protein XP_002347634 [Homo
sapiens]
Length = 513
Score = 38.5 bits (88), Expect = 0.004
Identities = 41/132 (31%), Positives = 51/132 (38%), Gaps = 34/132 (25%)
Query: 59 PAPPPRLKIHAGPALSPDSGQARPSPKSGRRPRRRVGKPGE------------------- 99
P PPP AG S G+AR + G +G+PG+
Sbjct: 324 PPPPP-----AGCGSSAPIGEARRGER-GDHWLPALGRPGDWLAGLQPAFGVKRSLRKCA 377
Query: 100 HGAFSLVRRGLLRSCGGHLTPHARVLSSGGTA----SAARSGV-----PAGSADAVPGIS 150
G S R L C G LT RV+S G A + AR V PAG A+ G
Sbjct: 378 RGESSAGARPLFPGCRGPLTHWKRVVSLGDEALHGVTRARPAVHWPVSPAGMGGALAGAP 437
Query: 151 RAGPGSPSMLLP 162
R G G+PS +P
Sbjct: 438 REGAGAPSSAVP 449
>gi|239745376 PREDICTED: hypothetical protein XP_002343484 [Homo
sapiens]
Length = 513
Score = 38.5 bits (88), Expect = 0.004
Identities = 41/132 (31%), Positives = 51/132 (38%), Gaps = 34/132 (25%)
Query: 59 PAPPPRLKIHAGPALSPDSGQARPSPKSGRRPRRRVGKPGE------------------- 99
P PPP AG S G+AR + G +G+PG+
Sbjct: 324 PPPPP-----AGCGSSAPIGEARRGER-GDHWLPALGRPGDWLAGLQPAFGVKRSLRKCA 377
Query: 100 HGAFSLVRRGLLRSCGGHLTPHARVLSSGGTA----SAARSGV-----PAGSADAVPGIS 150
G S R L C G LT RV+S G A + AR V PAG A+ G
Sbjct: 378 RGESSAGARPLFPGCRGPLTHWKRVVSLGDEALHGVTRARPAVHWPVSPAGMGGALAGAP 437
Query: 151 RAGPGSPSMLLP 162
R G G+PS +P
Sbjct: 438 REGAGAPSSAVP 449
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 38.5 bits (88), Expect = 0.004
Identities = 33/98 (33%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 58 APAPPPRLKIHAGPALSPDSGQARPSPKSGRRPRRRVGKPGEHGAFSLVRRGLLRSCGGH 117
AP PPP AG A G RP P S RRP G G SC
Sbjct: 86 APEPPP-----AGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAP- 139
Query: 118 LTPHARVLSSGGTASAARSGVPAGSADAVPGISRAGPG 155
P A +++G + A PAG A +RAGPG
Sbjct: 140 -VPAAAAVAAGPEPAPAGPAKPAGPAALA---ARAGPG 173
Score = 33.9 bits (76), Expect = 0.11
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 119 TPHARVLSSGGTASAARSGVPAGSADAVPGISRAG-PGSPSMLLPAGSLLLTAERSFTWG 177
TP R ++G + SG PAG+A A P G PG+ PAG R G
Sbjct: 47 TPEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAG-----RARPGGGG 101
Query: 178 GRRGTEKNPPGKWTGLAPGPGAAALGP 204
+R +P P P AA L P
Sbjct: 102 PQRPGPPSPRRPLVPAGPAPPAAKLRP 128
Score = 31.2 bits (69), Expect = 0.71
Identities = 40/156 (25%), Positives = 51/156 (32%), Gaps = 14/156 (8%)
Query: 58 APAPPPRLKIHAGPALSPDSGQARPSPKSGRRPRRRVGKPGEHGAFSLVRRGLLRSCGGH 117
APA P + AGPA P P G P GKP GA + H
Sbjct: 153 APAGPAK---PAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHH 209
Query: 118 LTPHARVLSSGGTASAARSGVPAGSADAV---PGISRAGPGSPSMLLPAGSLLLTAERSF 174
A L + G A+ PA + P + A P +P+ P + A +
Sbjct: 210 AAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAA- 268
Query: 175 TWGGRRGTEKNPPGKWTGLAPGPGAAALGPSDLPRV 210
PP LA PG A P+ P V
Sbjct: 269 -------APPPPPPAPATLARPPGHPAGPPTAAPAV 297
>gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]
Length = 694
Score = 38.1 bits (87), Expect = 0.006
Identities = 46/170 (27%), Positives = 59/170 (34%), Gaps = 28/170 (16%)
Query: 42 PRQPVRASSTSSRLLRAPAPPPRLKIHAGPALSPDSGQARPSPKSGRRPRRRVGKPGEHG 101
P+QPV + + PAP P+ A PA + P K+G P G+ G +G
Sbjct: 177 PQQPVSEPAAPEQ----PAPEPKHPARA-PARGDSEDRRGPGQKTGPDPASAPGR-GNYG 230
Query: 102 AFSLVRRGLLRSCGGHLTPHARVLSSGGTASAARSGVPAGSADAVPGISRAGPGSPSMLL 161
VRR SGG ++RS A++V SR PGS
Sbjct: 231 P--PVRRASEARMSSSSRDSESWDHSGGAGDSSRSPAGLRRANSVQA-SRPAPGSVQSPA 287
Query: 162 PAGSLLLTAERSFTWGGRRGTEKNPPGKWTGLAPGPGAAALGPSDLPRVA 211
P + PG G PGPG A P P VA
Sbjct: 288 PP-------------------QPGQPGTPGGSRPGPGPAGRFPDQKPEVA 318
>gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]
Length = 690
Score = 38.1 bits (87), Expect = 0.006
Identities = 46/170 (27%), Positives = 59/170 (34%), Gaps = 28/170 (16%)
Query: 42 PRQPVRASSTSSRLLRAPAPPPRLKIHAGPALSPDSGQARPSPKSGRRPRRRVGKPGEHG 101
P+QPV + + PAP P+ A PA + P K+G P G+ G +G
Sbjct: 173 PQQPVSEPAAPEQ----PAPEPKHPARA-PARGDSEDRRGPGQKTGPDPASAPGR-GNYG 226
Query: 102 AFSLVRRGLLRSCGGHLTPHARVLSSGGTASAARSGVPAGSADAVPGISRAGPGSPSMLL 161
VRR SGG ++RS A++V SR PGS
Sbjct: 227 P--PVRRASEARMSSSSRDSESWDHSGGAGDSSRSPAGLRRANSVQA-SRPAPGSVQSPA 283
Query: 162 PAGSLLLTAERSFTWGGRRGTEKNPPGKWTGLAPGPGAAALGPSDLPRVA 211
P + PG G PGPG A P P VA
Sbjct: 284 PP-------------------QPGQPGTPGGSRPGPGPAGRFPDQKPEVA 314
>gi|194018488 peroxisomal biogenesis factor 6 [Homo sapiens]
Length = 980
Score = 37.4 bits (85), Expect = 0.010
Identities = 35/111 (31%), Positives = 42/111 (37%), Gaps = 22/111 (19%)
Query: 120 PHARVLSSGGTASAARSGV-----PAGSADAVP------------GISRAGPGSPSMLLP 162
P A +L GG AA G+ PAG + A P G GPG P +L+
Sbjct: 18 PLAVLLPPGGPWPAAELGLVLALRPAGESPAGPALLVAALEGPDAGTEEQGPGPPQLLVS 77
Query: 163 AGSLLLTAERSFTWGGRRGTEKNPPGKWTGLAPGPGAAALGPSDLPRVASL 213
L L A S W R + P W L +LGP PRV L
Sbjct: 78 RALLRLLALGSGAWVRARAVRRPPALGWALL-----GTSLGPGLGPRVGPL 123
>gi|239741753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 37.0 bits (84), Expect = 0.013
Identities = 40/134 (29%), Positives = 53/134 (39%), Gaps = 29/134 (21%)
Query: 59 PAPPPRLKIHAGPALSPDSGQARPSPKSGRRPRR------------RVGKPGEHG-AFSL 105
PAPPP GPA + + RP P +GRR RR R+G+ G L
Sbjct: 137 PAPPPA-PARTGPAGKAAADRGRPGPAAGRRVRRSPSFPPFLLAQTRLGRTGPLALCLLL 195
Query: 106 VRRGLLRSCGGHLTPHARVLSSGGTASAARSGVPAGSADAV-----------PGISRAGP 154
+ G +R GG L+ G AAR+G G A PG +R P
Sbjct: 196 LLHGAMRLGGG----SREKLACGRAGRAARTGRGEGGRRAEEEAAGRRRRRRPGRTRGIP 251
Query: 155 GSPSMLLPAGSLLL 168
+ L AG+ +L
Sbjct: 252 RAAGGLSRAGTRVL 265
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 36.6 bits (83), Expect = 0.017
Identities = 50/174 (28%), Positives = 62/174 (35%), Gaps = 36/174 (20%)
Query: 41 FPRQPVRASSTSSRLLRAPA---PPPRLKIHAG-PALSPD---------SGQARPSPKSG 87
FP P RAS + LL PA PPP++ G P L+P S P+ G
Sbjct: 1038 FPSAPPRASGSHGSLLLPPASSPPPPQVPQRRGTPPLTPGRLTQDLKLISASQPALPQDG 1097
Query: 88 RRPRRRVGKPGEHGAFSLVRRGLLRSCGGHLTPHARVLSSGGTASAARSGVPAGSADAVP 147
+ RR P G S+ L GG SGG+ S+ G P A+P
Sbjct: 1098 AQTLRR-ASPHSSGE-SMAAFPLFPRAGG---------GSGGSGSSGGLGPPGRPYGAIP 1146
Query: 148 G--ISRAGPGSPSMLLPAGSLLLTAERSFTWGGRRGTEKNPPGKWTGLAPGPGA 199
G ++ S L P SL G R T P G PGA
Sbjct: 1147 GQHVTLPRKTSSGSLPPPLSLF----------GARATSSGGPPLTAGPQREPGA 1190
Score = 27.7 bits (60), Expect = 7.8
Identities = 51/217 (23%), Positives = 68/217 (31%), Gaps = 58/217 (26%)
Query: 42 PRQPVRASSTSSRLLRAPAPPPRLKIHAGPALSPDSGQARPSPKS------------GRR 89
P R+ S+S L P L + GP +P++ +P P S G
Sbjct: 961 PPPSSRSPSSSPGQLGQPPGELSLGLATGPLSTPETPPRQPEPPSLVAGASGGASPVGFT 1020
Query: 90 PRRRVGKP------------------GEHGAFSL------------VRRGLLRSCGGHLT 119
PR + P G HG+ L RRG G LT
Sbjct: 1021 PRGGLSPPGHSPGPPRTFPSAPPRASGSHGSLLLPPASSPPPPQVPQRRGTPPLTPGRLT 1080
Query: 120 PHARVLSSGGTASAARSGVPAGSADAVPGISRAGPGSPSMLLPAGSLLLTAERSFTWGGR 179
+++S + PA D + RA P S + A L A G
Sbjct: 1081 QDLKLIS---------ASQPALPQDGAQTLRRASPHSSGESMAAFPLFPRAGGGSGGSGS 1131
Query: 180 RGTEKNPPGKWTGLAPGPGAAALGPSDLPRVASLSSV 216
G PPG+ G PG LPR S S+
Sbjct: 1132 SG-GLGPPGRPYGAIPGQHVT------LPRKTSSGSL 1161
>gi|113416171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 265
Score = 36.6 bits (83), Expect = 0.017
Identities = 52/183 (28%), Positives = 65/183 (35%), Gaps = 52/183 (28%)
Query: 42 PRQPVRASSTSSRLLRAPAPPPRLKIHAGPALSPDSGQARPSPKSGRRPRRRVGKPGEHG 101
PR+ RA+ S+R RA A P R H G P++ RRPR G
Sbjct: 109 PRRQSRATGKSARTRRACASPCRPGRHCG-------------PETARRPRPLAG------ 149
Query: 102 AFSLVRRGLLRSCGGHLTPHARVLSSGGTASAARSGVPAGSADAVPGISRAGPGSPSMLL 161
CGG ARVLS+ + SG A + VP RA S
Sbjct: 150 ---------TTFCGG-----ARVLSN---PPPSGSGGDARPSPLVPRRCRATSASLPQET 192
Query: 162 PAGSLLLTAERSFTWGGRRGTE------KNPPGKWTGLA---------PGPGAAALGPSD 206
P ++ A R + G RG K PP W A PG+ G D
Sbjct: 193 PFALSVVWAPRRRSQGDARGRRTGVPCAKRPPAGWLAAAVTSWSPASRRNPGSLR-GRKD 251
Query: 207 LPR 209
+PR
Sbjct: 252 VPR 254
>gi|169166294 PREDICTED: hypothetical protein [Homo sapiens]
Length = 265
Score = 36.6 bits (83), Expect = 0.017
Identities = 52/183 (28%), Positives = 65/183 (35%), Gaps = 52/183 (28%)
Query: 42 PRQPVRASSTSSRLLRAPAPPPRLKIHAGPALSPDSGQARPSPKSGRRPRRRVGKPGEHG 101
PR+ RA+ S+R RA A P R H G P++ RRPR G
Sbjct: 109 PRRQSRATGKSARTRRACASPCRPGRHCG-------------PETARRPRPLAG------ 149
Query: 102 AFSLVRRGLLRSCGGHLTPHARVLSSGGTASAARSGVPAGSADAVPGISRAGPGSPSMLL 161
CGG ARVLS+ + SG A + VP RA S
Sbjct: 150 ---------TTFCGG-----ARVLSN---PPPSGSGGDARPSPLVPRRCRATSASLPQET 192
Query: 162 PAGSLLLTAERSFTWGGRRGTE------KNPPGKWTGLA---------PGPGAAALGPSD 206
P ++ A R + G RG K PP W A PG+ G D
Sbjct: 193 PFALSVVWAPRRRSQGDARGRRTGVPCAKRPPAGWLAAAVTSWSPASRRNPGSLR-GRKD 251
Query: 207 LPR 209
+PR
Sbjct: 252 VPR 254
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 36.2 bits (82), Expect = 0.022
Identities = 47/144 (32%), Positives = 58/144 (40%), Gaps = 14/144 (9%)
Query: 69 AGPALSPDSGQARPSPKSGRRPRRRVGKPGEHGAFSLVRRGLLRSCGGHLTPHA--RVLS 126
+GP+ + +AR + GRR RR G PG A S +SCGG A R L+
Sbjct: 90 SGPSRQRRTSRARTA-LWGRRSRRAAG-PGLDCAGSAPAPSGAQSCGGPAPASALRRPLT 147
Query: 127 ----SGG----TASAARSGVPAGSADAVPGISRAGPGSPSML-LPAGSLLLTAERSFTWG 177
SGG + S R+G P G + G R P S L L GS +WG
Sbjct: 148 QWDASGGGGRGSHSGPRAGTPGGGRSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWG 207
Query: 178 GRRGTEKNPPGKWTGLAPGPGAAA 201
G GT P W GA A
Sbjct: 208 G-SGTPPPPRALWNRHGGAAGARA 230
Score = 29.6 bits (65), Expect = 2.1
Identities = 39/165 (23%), Positives = 54/165 (32%), Gaps = 37/165 (22%)
Query: 38 AELFPRQPVRASSTSSRLLRAPAPPPRLKIHAGPALSPDSGQARPSPKSGRRPRRRVGKP 97
+EL+ R S+ +R L P+ A P +P+P+ P R G
Sbjct: 363 SELWARAERHGGSSGARTLPTPS-------RARPG--------KPAPRGSAPPARLRGGG 407
Query: 98 GEHGAFSLV----RRGLLRSCGGHL------------------TPHARVLSSGGTASAAR 135
G G LV G+ S G H PH R LSS S R
Sbjct: 408 GGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHFRPLSSPAPQSPPR 467
Query: 136 SGVPAGSADAVPGISRAGPGSPSMLLPAGSLLLTAERSFTWGGRR 180
S + + P +P G +L + WGG+R
Sbjct: 468 SPSVRAFGPRLGAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQR 512
>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 36.2 bits (82), Expect = 0.022
Identities = 47/144 (32%), Positives = 58/144 (40%), Gaps = 14/144 (9%)
Query: 69 AGPALSPDSGQARPSPKSGRRPRRRVGKPGEHGAFSLVRRGLLRSCGGHLTPHA--RVLS 126
+GP+ + +AR + GRR RR G PG A S +SCGG A R L+
Sbjct: 90 SGPSRQRRTSRARTA-LWGRRSRRAAG-PGLDCAGSAPAPSGAQSCGGPAPASALRRPLT 147
Query: 127 ----SGG----TASAARSGVPAGSADAVPGISRAGPGSPSML-LPAGSLLLTAERSFTWG 177
SGG + S R+G P G + G R P S L L GS +WG
Sbjct: 148 QWDASGGGGRGSHSGPRAGTPGGGRSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWG 207
Query: 178 GRRGTEKNPPGKWTGLAPGPGAAA 201
G GT P W GA A
Sbjct: 208 G-SGTPPPPRALWNRHGGAAGARA 230
Score = 29.6 bits (65), Expect = 2.1
Identities = 39/165 (23%), Positives = 54/165 (32%), Gaps = 37/165 (22%)
Query: 38 AELFPRQPVRASSTSSRLLRAPAPPPRLKIHAGPALSPDSGQARPSPKSGRRPRRRVGKP 97
+EL+ R S+ +R L P+ A P +P+P+ P R G
Sbjct: 363 SELWARAERHGGSSGARTLPTPS-------RARPG--------KPAPRGSAPPARLRGGG 407
Query: 98 GEHGAFSLV----RRGLLRSCGGHL------------------TPHARVLSSGGTASAAR 135
G G LV G+ S G H PH R LSS S R
Sbjct: 408 GGSGLTQLVGSGRGSGVTHSVGTHALATRRGSRAPRPVGVLRGVPHFRPLSSPAPQSPPR 467
Query: 136 SGVPAGSADAVPGISRAGPGSPSMLLPAGSLLLTAERSFTWGGRR 180
S + + P +P G +L + WGG+R
Sbjct: 468 SPSVRAFGPRLGAGRLSCPQAPRAAALPGIAVLAPSPAHDWGGQR 512
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 35.4 bits (80), Expect = 0.038
Identities = 53/173 (30%), Positives = 57/173 (32%), Gaps = 37/173 (21%)
Query: 57 RAPAPPPRLKIHAGPALSP--------DSGQARPSPKSGRRPRRRVGKPGEHGAFSLVRR 108
R P P L AG A P D R G+ R G PG GA
Sbjct: 992 RGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGA------ 1045
Query: 109 GLLRSCGGHLTPHARVLSSGGTASAARSGVPAGSADAV-PGISRAGPGSPSMLLPAGSLL 167
GH P V +G + SG PAG A A P SR PG P G
Sbjct: 1046 ------PGHPGPPGPVGPAGKSGDRGESG-PAGPAGAPGPAGSRGAPGPQG---PRGDKG 1095
Query: 168 LTAERSFTW-GGRRGTEKNP-------PGKWTGLAPGPGAAA----LGPSDLP 208
T ER G RG NP P G PG A +GPS P
Sbjct: 1096 ETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPP 1148
Score = 32.0 bits (71), Expect = 0.41
Identities = 43/158 (27%), Positives = 54/158 (34%), Gaps = 23/158 (14%)
Query: 48 ASSTSSRLLRAPAPPPRLKIHAGP-ALSPDSGQARPSPKSGRRPRRRVGKPGEHGAFSLV 106
A T +R L P P + GP + +SG+ + SG R G PG G
Sbjct: 950 AGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGER-----GPPGPQG----- 999
Query: 107 RRGLLRSCGGHLTPHARVLSSGGTASAARSGVPAGSADAVPGISRAGPGSPSMLLPAGSL 166
L G R + G R G P G D S PG+P P G +
Sbjct: 1000 ----LPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPV 1055
Query: 167 LLTAERSFTWGGRRGTEKNPPGKWTGLAPGPGAAALGP 204
+ G RG E P G APGP + P
Sbjct: 1056 GPAGK-----SGDRG-ESGPAG--PAGAPGPAGSRGAP 1085
Score = 31.2 bits (69), Expect = 0.71
Identities = 43/141 (30%), Positives = 50/141 (35%), Gaps = 32/141 (22%)
Query: 77 SGQARPSPKSGRRPRRRVGKPGEHGAFSLV-RRGLLRSCGGHLTPHARVLSSGGTASAAR 135
SG A P G + R G PG GA RGL G S+G
Sbjct: 848 SGPAGPPGPQGVKGER--GSPGGPGAAGFPGARGLPGPPG----------SNGNPGPPGP 895
Query: 136 SGVPAGSADAVPGISRAGPGSPSMLLPAGSLLLTAERSFTWGGRRGTEKNPPGKWTGLAP 195
SG P P + PGSP + P G E+ G G + PPG AP
Sbjct: 896 SGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEK-----GSPGAQ-GPPG-----AP 944
Query: 196 GP-------GAAAL-GPSDLP 208
GP GA L GP +P
Sbjct: 945 GPLGIAGITGARGLAGPPGMP 965
Score = 29.3 bits (64), Expect = 2.7
Identities = 43/155 (27%), Positives = 53/155 (34%), Gaps = 40/155 (25%)
Query: 69 AGPALSPDSGQARPSPKSGRRPRRRVGKPGEHGAFSLVRRGLLRSCGGHLTPHARVLSSG 128
AGPA +P +R +P + PR G+ GE GA + GH
Sbjct: 1070 AGPAGAPGPAGSRGAP-GPQGPRGDKGETGERGAAGIK---------GHR-------GFP 1112
Query: 129 GTASAARSGVPAGSADAVPGISRAGP----------------GSPSMLLPAGSLLLTAER 172
G A S PAG A+ AGP G P + P G ER
Sbjct: 1113 GNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGER 1172
Query: 173 SFTWGGRRGTEKNPPGKWTGLAPGP-----GAAAL 202
+ PPG APGP GAAA+
Sbjct: 1173 GSEGSPGHPGQPGPPG--PPGAPGPCCGGVGAAAI 1205
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.133 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,781,185
Number of Sequences: 37866
Number of extensions: 636440
Number of successful extensions: 4546
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 377
Number of HSP's that attempted gapping in prelim test: 4179
Number of HSP's gapped (non-prelim): 775
length of query: 217
length of database: 18,247,518
effective HSP length: 98
effective length of query: 119
effective length of database: 14,536,650
effective search space: 1729861350
effective search space used: 1729861350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.