Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239748400
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748400 PREDICTED: hypothetical protein XP_002346661 [Homo
sapiens]
(563 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753837 PREDICTED: similar to Uncharacterized protein LP905... 1179 0.0
gi|239748400 PREDICTED: hypothetical protein XP_002346661 [Homo ... 1179 0.0
gi|239742330 PREDICTED: hypothetical protein XP_002342492 [Homo ... 1179 0.0
gi|46485773 syncytin 2 [Homo sapiens] 73 8e-13
gi|195963433 syncytin precursor [Homo sapiens] 56 8e-08
gi|48949851 syncytin precursor [Homo sapiens] 56 8e-08
gi|145651814 endogenous retroviral sequence 3 [Homo sapiens] 45 1e-04
gi|157057547 Fc receptor-like 6 [Homo sapiens] 33 0.91
gi|109659839 solute carrier family 5 (sodium/glucose cotransport... 32 1.2
gi|109659836 solute carrier family 5 (sodium/glucose cotransport... 32 1.2
gi|226443002 jumonji, AT rich interactive domain 1D isoform 3 [H... 32 1.6
gi|33356560 jumonji, AT rich interactive domain 1D isoform 2 [Ho... 32 1.6
gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [H... 32 1.6
gi|31542280 hypothetical protein LOC221481 [Homo sapiens] 32 1.6
gi|154350244 hypothetical protein LOC79632 isoform 2 [Homo sapiens] 31 2.6
gi|154350226 hypothetical protein LOC79632 isoform 1 [Homo sapiens] 31 2.6
gi|165932370 FAT tumor suppressor homolog 4 [Homo sapiens] 30 4.5
gi|50659091 scavenger receptor cysteine-rich type 1 precursor [H... 30 4.5
gi|223633941 hypothetical protein LOC389730 [Homo sapiens] 30 7.7
gi|91206406 hypothetical protein LOC642265 [Homo sapiens] 30 7.7
gi|51243032 oxysterol-binding protein-like protein 8 isoform b [... 30 7.7
gi|18079218 oxysterol-binding protein-like protein 8 isoform a [... 30 7.7
gi|133892686 hypothetical protein LOC727830 [Homo sapiens] 30 7.7
gi|146231958 hypothetical protein LOC647060 [Homo sapiens] 30 7.7
>gi|239753837 PREDICTED: similar to Uncharacterized protein LP9056
[Homo sapiens]
Length = 563
Score = 1179 bits (3050), Expect = 0.0
Identities = 563/563 (100%), Positives = 563/563 (100%)
Query: 1 MGSLSNYALLQLTLTAFLTILVQPQHLLAPVFRTLSILTNQSNCWLCEHLDNAEQPELVF 60
MGSLSNYALLQLTLTAFLTILVQPQHLLAPVFRTLSILTNQSNCWLCEHLDNAEQPELVF
Sbjct: 1 MGSLSNYALLQLTLTAFLTILVQPQHLLAPVFRTLSILTNQSNCWLCEHLDNAEQPELVF 60
Query: 61 VPASASTWWTYSGQWMYERVWYPQAEVQNHSTSSYRKVTWHWEASMEAQGLSFAQVRLLE 120
VPASASTWWTYSGQWMYERVWYPQAEVQNHSTSSYRKVTWHWEASMEAQGLSFAQVRLLE
Sbjct: 61 VPASASTWWTYSGQWMYERVWYPQAEVQNHSTSSYRKVTWHWEASMEAQGLSFAQVRLLE 120
Query: 121 GNFSLCVENKNGSGPFLGNIPKQYCNQILWFDSTDGTFMPSIDVTNESRNDDDDTSVCLG 180
GNFSLCVENKNGSGPFLGNIPKQYCNQILWFDSTDGTFMPSIDVTNESRNDDDDTSVCLG
Sbjct: 121 GNFSLCVENKNGSGPFLGNIPKQYCNQILWFDSTDGTFMPSIDVTNESRNDDDDTSVCLG 180
Query: 181 TRQCSWFAGCTNRTWNSSAVPLIGLPNTQDYKWVDRNSGLTWSGNDTCLYSCQNQTKGLL 240
TRQCSWFAGCTNRTWNSSAVPLIGLPNTQDYKWVDRNSGLTWSGNDTCLYSCQNQTKGLL
Sbjct: 181 TRQCSWFAGCTNRTWNSSAVPLIGLPNTQDYKWVDRNSGLTWSGNDTCLYSCQNQTKGLL 240
Query: 241 YQLFRNLFCSYGLTEAHGKWRCADASITNDKGHDGHRTPTWWLTGSNLTLSVNNSGLFFL 300
YQLFRNLFCSYGLTEAHGKWRCADASITNDKGHDGHRTPTWWLTGSNLTLSVNNSGLFFL
Sbjct: 241 YQLFRNLFCSYGLTEAHGKWRCADASITNDKGHDGHRTPTWWLTGSNLTLSVNNSGLFFL 300
Query: 301 CGNGVYKGFPPKWSGRCGLGYLVPSLTRYLTLNASQITNLRSFIHKVTPHRCTQGDTDNP 360
CGNGVYKGFPPKWSGRCGLGYLVPSLTRYLTLNASQITNLRSFIHKVTPHRCTQGDTDNP
Sbjct: 301 CGNGVYKGFPPKWSGRCGLGYLVPSLTRYLTLNASQITNLRSFIHKVTPHRCTQGDTDNP 360
Query: 361 PLYCNPKDNSTIRALFPSLGTYDLEKAILNISKAMEQEFSATKQTLEAHQSKVSSLASAS 420
PLYCNPKDNSTIRALFPSLGTYDLEKAILNISKAMEQEFSATKQTLEAHQSKVSSLASAS
Sbjct: 361 PLYCNPKDNSTIRALFPSLGTYDLEKAILNISKAMEQEFSATKQTLEAHQSKVSSLASAS 420
Query: 421 RKDHVLDIPTTQRQTACGTVGKQCCLYINYSEEIKSNIQRLHEASENLKNVPLLDWQGIF 480
RKDHVLDIPTTQRQTACGTVGKQCCLYINYSEEIKSNIQRLHEASENLKNVPLLDWQGIF
Sbjct: 421 RKDHVLDIPTTQRQTACGTVGKQCCLYINYSEEIKSNIQRLHEASENLKNVPLLDWQGIF 480
Query: 481 AKVGDWFRSWGYVLLIVLFCLFIFVLIYVRVFRKSRRSLNSQPLNLALSPQQSAQLLVSE 540
AKVGDWFRSWGYVLLIVLFCLFIFVLIYVRVFRKSRRSLNSQPLNLALSPQQSAQLLVSE
Sbjct: 481 AKVGDWFRSWGYVLLIVLFCLFIFVLIYVRVFRKSRRSLNSQPLNLALSPQQSAQLLVSE 540
Query: 541 TSCQVSNRAMKGLTTHQYDTSLL 563
TSCQVSNRAMKGLTTHQYDTSLL
Sbjct: 541 TSCQVSNRAMKGLTTHQYDTSLL 563
>gi|239748400 PREDICTED: hypothetical protein XP_002346661 [Homo
sapiens]
Length = 563
Score = 1179 bits (3050), Expect = 0.0
Identities = 563/563 (100%), Positives = 563/563 (100%)
Query: 1 MGSLSNYALLQLTLTAFLTILVQPQHLLAPVFRTLSILTNQSNCWLCEHLDNAEQPELVF 60
MGSLSNYALLQLTLTAFLTILVQPQHLLAPVFRTLSILTNQSNCWLCEHLDNAEQPELVF
Sbjct: 1 MGSLSNYALLQLTLTAFLTILVQPQHLLAPVFRTLSILTNQSNCWLCEHLDNAEQPELVF 60
Query: 61 VPASASTWWTYSGQWMYERVWYPQAEVQNHSTSSYRKVTWHWEASMEAQGLSFAQVRLLE 120
VPASASTWWTYSGQWMYERVWYPQAEVQNHSTSSYRKVTWHWEASMEAQGLSFAQVRLLE
Sbjct: 61 VPASASTWWTYSGQWMYERVWYPQAEVQNHSTSSYRKVTWHWEASMEAQGLSFAQVRLLE 120
Query: 121 GNFSLCVENKNGSGPFLGNIPKQYCNQILWFDSTDGTFMPSIDVTNESRNDDDDTSVCLG 180
GNFSLCVENKNGSGPFLGNIPKQYCNQILWFDSTDGTFMPSIDVTNESRNDDDDTSVCLG
Sbjct: 121 GNFSLCVENKNGSGPFLGNIPKQYCNQILWFDSTDGTFMPSIDVTNESRNDDDDTSVCLG 180
Query: 181 TRQCSWFAGCTNRTWNSSAVPLIGLPNTQDYKWVDRNSGLTWSGNDTCLYSCQNQTKGLL 240
TRQCSWFAGCTNRTWNSSAVPLIGLPNTQDYKWVDRNSGLTWSGNDTCLYSCQNQTKGLL
Sbjct: 181 TRQCSWFAGCTNRTWNSSAVPLIGLPNTQDYKWVDRNSGLTWSGNDTCLYSCQNQTKGLL 240
Query: 241 YQLFRNLFCSYGLTEAHGKWRCADASITNDKGHDGHRTPTWWLTGSNLTLSVNNSGLFFL 300
YQLFRNLFCSYGLTEAHGKWRCADASITNDKGHDGHRTPTWWLTGSNLTLSVNNSGLFFL
Sbjct: 241 YQLFRNLFCSYGLTEAHGKWRCADASITNDKGHDGHRTPTWWLTGSNLTLSVNNSGLFFL 300
Query: 301 CGNGVYKGFPPKWSGRCGLGYLVPSLTRYLTLNASQITNLRSFIHKVTPHRCTQGDTDNP 360
CGNGVYKGFPPKWSGRCGLGYLVPSLTRYLTLNASQITNLRSFIHKVTPHRCTQGDTDNP
Sbjct: 301 CGNGVYKGFPPKWSGRCGLGYLVPSLTRYLTLNASQITNLRSFIHKVTPHRCTQGDTDNP 360
Query: 361 PLYCNPKDNSTIRALFPSLGTYDLEKAILNISKAMEQEFSATKQTLEAHQSKVSSLASAS 420
PLYCNPKDNSTIRALFPSLGTYDLEKAILNISKAMEQEFSATKQTLEAHQSKVSSLASAS
Sbjct: 361 PLYCNPKDNSTIRALFPSLGTYDLEKAILNISKAMEQEFSATKQTLEAHQSKVSSLASAS 420
Query: 421 RKDHVLDIPTTQRQTACGTVGKQCCLYINYSEEIKSNIQRLHEASENLKNVPLLDWQGIF 480
RKDHVLDIPTTQRQTACGTVGKQCCLYINYSEEIKSNIQRLHEASENLKNVPLLDWQGIF
Sbjct: 421 RKDHVLDIPTTQRQTACGTVGKQCCLYINYSEEIKSNIQRLHEASENLKNVPLLDWQGIF 480
Query: 481 AKVGDWFRSWGYVLLIVLFCLFIFVLIYVRVFRKSRRSLNSQPLNLALSPQQSAQLLVSE 540
AKVGDWFRSWGYVLLIVLFCLFIFVLIYVRVFRKSRRSLNSQPLNLALSPQQSAQLLVSE
Sbjct: 481 AKVGDWFRSWGYVLLIVLFCLFIFVLIYVRVFRKSRRSLNSQPLNLALSPQQSAQLLVSE 540
Query: 541 TSCQVSNRAMKGLTTHQYDTSLL 563
TSCQVSNRAMKGLTTHQYDTSLL
Sbjct: 541 TSCQVSNRAMKGLTTHQYDTSLL 563
>gi|239742330 PREDICTED: hypothetical protein XP_002342492 [Homo
sapiens]
Length = 563
Score = 1179 bits (3050), Expect = 0.0
Identities = 563/563 (100%), Positives = 563/563 (100%)
Query: 1 MGSLSNYALLQLTLTAFLTILVQPQHLLAPVFRTLSILTNQSNCWLCEHLDNAEQPELVF 60
MGSLSNYALLQLTLTAFLTILVQPQHLLAPVFRTLSILTNQSNCWLCEHLDNAEQPELVF
Sbjct: 1 MGSLSNYALLQLTLTAFLTILVQPQHLLAPVFRTLSILTNQSNCWLCEHLDNAEQPELVF 60
Query: 61 VPASASTWWTYSGQWMYERVWYPQAEVQNHSTSSYRKVTWHWEASMEAQGLSFAQVRLLE 120
VPASASTWWTYSGQWMYERVWYPQAEVQNHSTSSYRKVTWHWEASMEAQGLSFAQVRLLE
Sbjct: 61 VPASASTWWTYSGQWMYERVWYPQAEVQNHSTSSYRKVTWHWEASMEAQGLSFAQVRLLE 120
Query: 121 GNFSLCVENKNGSGPFLGNIPKQYCNQILWFDSTDGTFMPSIDVTNESRNDDDDTSVCLG 180
GNFSLCVENKNGSGPFLGNIPKQYCNQILWFDSTDGTFMPSIDVTNESRNDDDDTSVCLG
Sbjct: 121 GNFSLCVENKNGSGPFLGNIPKQYCNQILWFDSTDGTFMPSIDVTNESRNDDDDTSVCLG 180
Query: 181 TRQCSWFAGCTNRTWNSSAVPLIGLPNTQDYKWVDRNSGLTWSGNDTCLYSCQNQTKGLL 240
TRQCSWFAGCTNRTWNSSAVPLIGLPNTQDYKWVDRNSGLTWSGNDTCLYSCQNQTKGLL
Sbjct: 181 TRQCSWFAGCTNRTWNSSAVPLIGLPNTQDYKWVDRNSGLTWSGNDTCLYSCQNQTKGLL 240
Query: 241 YQLFRNLFCSYGLTEAHGKWRCADASITNDKGHDGHRTPTWWLTGSNLTLSVNNSGLFFL 300
YQLFRNLFCSYGLTEAHGKWRCADASITNDKGHDGHRTPTWWLTGSNLTLSVNNSGLFFL
Sbjct: 241 YQLFRNLFCSYGLTEAHGKWRCADASITNDKGHDGHRTPTWWLTGSNLTLSVNNSGLFFL 300
Query: 301 CGNGVYKGFPPKWSGRCGLGYLVPSLTRYLTLNASQITNLRSFIHKVTPHRCTQGDTDNP 360
CGNGVYKGFPPKWSGRCGLGYLVPSLTRYLTLNASQITNLRSFIHKVTPHRCTQGDTDNP
Sbjct: 301 CGNGVYKGFPPKWSGRCGLGYLVPSLTRYLTLNASQITNLRSFIHKVTPHRCTQGDTDNP 360
Query: 361 PLYCNPKDNSTIRALFPSLGTYDLEKAILNISKAMEQEFSATKQTLEAHQSKVSSLASAS 420
PLYCNPKDNSTIRALFPSLGTYDLEKAILNISKAMEQEFSATKQTLEAHQSKVSSLASAS
Sbjct: 361 PLYCNPKDNSTIRALFPSLGTYDLEKAILNISKAMEQEFSATKQTLEAHQSKVSSLASAS 420
Query: 421 RKDHVLDIPTTQRQTACGTVGKQCCLYINYSEEIKSNIQRLHEASENLKNVPLLDWQGIF 480
RKDHVLDIPTTQRQTACGTVGKQCCLYINYSEEIKSNIQRLHEASENLKNVPLLDWQGIF
Sbjct: 421 RKDHVLDIPTTQRQTACGTVGKQCCLYINYSEEIKSNIQRLHEASENLKNVPLLDWQGIF 480
Query: 481 AKVGDWFRSWGYVLLIVLFCLFIFVLIYVRVFRKSRRSLNSQPLNLALSPQQSAQLLVSE 540
AKVGDWFRSWGYVLLIVLFCLFIFVLIYVRVFRKSRRSLNSQPLNLALSPQQSAQLLVSE
Sbjct: 481 AKVGDWFRSWGYVLLIVLFCLFIFVLIYVRVFRKSRRSLNSQPLNLALSPQQSAQLLVSE 540
Query: 541 TSCQVSNRAMKGLTTHQYDTSLL 563
TSCQVSNRAMKGLTTHQYDTSLL
Sbjct: 541 TSCQVSNRAMKGLTTHQYDTSLL 563
>gi|46485773 syncytin 2 [Homo sapiens]
Length = 538
Score = 72.8 bits (177), Expect = 8e-13
Identities = 128/588 (21%), Positives = 215/588 (36%), Gaps = 121/588 (20%)
Query: 9 LLQLTLTAFLTILVQPQHLLAPVFRTLSILTNQ---SNCWLCEHLDNAEQPELVFVPASA 65
LL L LT L P L + L T +NCWLC + E P + PAS
Sbjct: 5 LLVLILTPSLAAYRHPDFPLLEKAQQLLQSTGSPYSTNCWLCTS-SSTETPGTAY-PASP 62
Query: 66 STWWTYSGQWMYERVWYPQAE----VQNHSTSSYRKVTWHWEASMEAQGLSFAQVRLLEG 121
W + + W P + N S+ ++ G F + L+ G
Sbjct: 63 REWTSIEAELHISYRWDPNLKGLMRPANSLLSTVKQDFPDIRQKPPIFGPIFTNINLM-G 121
Query: 122 NFSLCVENKNGSGPFLGNIPKQYCNQILWFDSTDGTFMPSIDVTNESRND---------- 171
+CV K +G +G +P CN DS T+ N+ R+
Sbjct: 122 IAPICVMAKRKNGTNVGTLPSTVCNVTFTVDSNQQTYQTYTH--NQFRHQPRFPKPPNIT 179
Query: 172 -------DDDTSVCLGT-RQCS----WFAGCTNRTWNSSAVPLIGLPNTQDYKWVDRN-S 218
D + C G CS WF + + + L +T ++ +D+ +
Sbjct: 180 FPQGTLLDKSSRFCQGRPSSCSTRNFWFRPADY----NQCLQISNLSSTAEWVLLDQTRN 235
Query: 219 GLTWSGNDTCLYSCQNQTKGLLYQLFRNLFCSYGLTEAHGKWRCADASITNDKGHDGHRT 278
L W +N+TKG + G+T A + S + T
Sbjct: 236 SLFW----------ENKTKGANQSQTPCVQVLAGMTIATSYLGISAVS-------EFFGT 278
Query: 279 PTWWLTGSNLTLSVNNSGLFFLCGNGVYKGFPPKWSGRCGLGYLVPSLTRYLTLNASQIT 338
L +++ + G F++CG +++ P W+G C +GY+ P +
Sbjct: 279 SLTPLFHFHISTCLKTQGAFYICGQSIHQCLPSNWTGTCTIGYVTPDI------------ 326
Query: 339 NLRSFIHKVTPHRCTQGDTDNP-PLYCNPKDNSTIRAL--FPSL-----------GTYDL 384
FI G+ P P+Y N RA+ P L G +
Sbjct: 327 ----FI--------APGNLSLPIPIYGNSPLPRVRRAIHFIPLLAGLGILAGTGTGIAGI 374
Query: 385 EKAILN---ISKAMEQEFSATKQTLEAHQSKVSSLASASRKDHV-LDIPTTQRQTACGTV 440
KA L +SK + + L Q ++ SLA+ ++ LD+ T + C +
Sbjct: 375 TKASLTYSQLSKEIANNIDTMAKALTTMQEQIDSLAAVVLQNRRGLDMLTAAQGGICLAL 434
Query: 441 GKQCCLYINYSEEIKSNIQRLHEASENLKNVPL---LDWQGIFAKVGDWFRSWGY----- 492
++CC ++N S +++ NI++L + +L+ L+W+G + WF SW
Sbjct: 435 DEKCCFWVNQSGKVQDNIRQLLNQASSLRERATQGWLNWEGTW----KWF-SWVLPLTGP 489
Query: 493 ---VLLIVLF--CLFIFVLIYV-----RVFRKSRRSLNSQPLNLALSP 530
+LL++LF CL + +V + ++ S P N+ SP
Sbjct: 490 LVSLLLLLLFGPCLLNLITQFVSSRLQAIKLQTNLSAGRHPRNIQESP 537
>gi|195963433 syncytin precursor [Homo sapiens]
Length = 538
Score = 56.2 bits (134), Expect = 8e-08
Identities = 52/227 (22%), Positives = 99/227 (43%), Gaps = 28/227 (12%)
Query: 295 SGLFFLCGNGVYKGFPPKWSGRCGLGYLVPSLTRYLTLNASQITNLRSFIHKVTPHRCTQ 354
SG+FF+CG Y+ C L +LVP +T Y +L S++ ++
Sbjct: 266 SGIFFVCGTSAYRCLNGSSESMCFLSFLVPPMTIYTE------QDLYSYV-------ISK 312
Query: 355 GDTDNPPLYCNPKDNSTIRALFPSLGTYDLEKAIL-NISKAMEQEFSATKQTLEAHQSKV 413
P+ + AL +G +S+ + + +L Q ++
Sbjct: 313 PRNKRVPILPFVIGAGVLGALGTGIGGITTSTQFYYKLSQELNGDMERVADSLVTLQDQL 372
Query: 414 SSLASASRKDH-VLDIPTTQRQTACGTVGKQCCLYINYS----EEIKSNIQRLHEASENL 468
+SLA+ ++ LD+ T +R C +G++CC Y+N S E++K R+ +E L
Sbjct: 373 NSLAAVVLQNRRALDLLTAERGGTCLFLGEECCYYVNQSGIVTEKVKEIRDRIQRRAEEL 432
Query: 469 KNVPLLDWQGIFAKVGDWFRSW----GYVLLIVLF--CLFIFVLIYV 509
+N W G+ ++ W + ++L++LF C+F ++ +V
Sbjct: 433 RNTG--PW-GLLSQWMPWILPFLGPLAAIILLLLFGPCIFNLLVNFV 476
>gi|48949851 syncytin precursor [Homo sapiens]
Length = 538
Score = 56.2 bits (134), Expect = 8e-08
Identities = 52/227 (22%), Positives = 99/227 (43%), Gaps = 28/227 (12%)
Query: 295 SGLFFLCGNGVYKGFPPKWSGRCGLGYLVPSLTRYLTLNASQITNLRSFIHKVTPHRCTQ 354
SG+FF+CG Y+ C L +LVP +T Y +L S++ ++
Sbjct: 266 SGIFFVCGTSAYRCLNGSSESMCFLSFLVPPMTIYTE------QDLYSYV-------ISK 312
Query: 355 GDTDNPPLYCNPKDNSTIRALFPSLGTYDLEKAIL-NISKAMEQEFSATKQTLEAHQSKV 413
P+ + AL +G +S+ + + +L Q ++
Sbjct: 313 PRNKRVPILPFVIGAGVLGALGTGIGGITTSTQFYYKLSQELNGDMERVADSLVTLQDQL 372
Query: 414 SSLASASRKDH-VLDIPTTQRQTACGTVGKQCCLYINYS----EEIKSNIQRLHEASENL 468
+SLA+ ++ LD+ T +R C +G++CC Y+N S E++K R+ +E L
Sbjct: 373 NSLAAVVLQNRRALDLLTAERGGTCLFLGEECCYYVNQSGIVTEKVKEIRDRIQRRAEEL 432
Query: 469 KNVPLLDWQGIFAKVGDWFRSW----GYVLLIVLF--CLFIFVLIYV 509
+N W G+ ++ W + ++L++LF C+F ++ +V
Sbjct: 433 RNTG--PW-GLLSQWMPWILPFLGPLAAIILLLLFGPCIFNLLVNFV 476
>gi|145651814 endogenous retroviral sequence 3 [Homo sapiens]
Length = 604
Score = 45.4 bits (106), Expect = 1e-04
Identities = 45/197 (22%), Positives = 81/197 (41%), Gaps = 20/197 (10%)
Query: 295 SGLFFLCGNGVYKGFPPKWSGRCGLGYLVPSLTRYLTLNASQITNLRSFIHKVTPHRCTQ 354
SGL+++CG Y+ P KWSG C LG + PS + + Q L I+ T + +
Sbjct: 415 SGLYWICGPQAYRQLPAKWSGACVLGTIRPS---FFLMPLKQGEALGYPIYDETKRKSKR 471
Query: 355 G-------DTDNPP----LYCNPKDNSTIRALFPSLGTYDLEKAILNISKAMEQEFSATK 403
G D + PP Y P + Y L + I+ + +E + T
Sbjct: 472 GITIGDWKDNEWPPERIIQYYGPATWAEDGMWGYRTPVYMLNR-IIRLQAVLEIITNETA 530
Query: 404 QTLEAHQSKVSSLASASRKDHV-LDIPTTQRQTACGTVG-KQCCLYINYSEEIKSNIQRL 461
L + + + + ++ + LD Q + CG CCL ++ ++ I+ +
Sbjct: 531 GALNLLAQQATKMRNVIYQNRLALDYLLAQEEGVCGKFNLTNCCLELDDEGKV---IKEI 587
Query: 462 HEASENLKNVPLLDWQG 478
+ L ++P+ W+G
Sbjct: 588 TAKIQKLAHIPVQTWKG 604
>gi|157057547 Fc receptor-like 6 [Homo sapiens]
Length = 434
Score = 32.7 bits (73), Expect = 0.91
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 449 NYSEEIKSNIQRLHEASENLKNVPLLDWQGIFAKVGDWFRSWGYVLLIVLFCLFIFVLIY 508
NYS E ++++ R E SE K + L Q +F +W W L+ L + +L+Y
Sbjct: 273 NYSCEAENSVSR--ERSEP-KKLSLKGSQVLFTPASNWLVPWLPASLLGLMVIAAALLVY 329
Query: 509 VRVFRKS 515
VR +RK+
Sbjct: 330 VRSWRKA 336
>gi|109659839 solute carrier family 5 (sodium/glucose
cotransporter), member 10 isoform 1 [Homo sapiens]
Length = 612
Score = 32.3 bits (72), Expect = 1.2
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 251 YGLTEAHGKWRCADASITNDKGHD-GHRTPTWWLTGSNLTLSVNNSGLFF-LCGNGVYKG 308
+ L A G W AS G+ R TWW G++L S SGLF L G+G G
Sbjct: 28 FALNVAVGIWSSCRASRNTVNGYFLAGRDMTWWPIGASLFASSEGSGLFIGLAGSGAAGG 87
>gi|109659836 solute carrier family 5 (sodium/glucose
cotransporter), member 10 isoform 2 [Homo sapiens]
Length = 596
Score = 32.3 bits (72), Expect = 1.2
Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 251 YGLTEAHGKWRCADASITNDKGHD-GHRTPTWWLTGSNLTLSVNNSGLFF-LCGNGVYKG 308
+ L A G W AS G+ R TWW G++L S SGLF L G+G G
Sbjct: 28 FALNVAVGIWSSCRASRNTVNGYFLAGRDMTWWPIGASLFASSEGSGLFIGLAGSGAAGG 87
>gi|226443002 jumonji, AT rich interactive domain 1D isoform 3 [Homo
sapiens]
Length = 1482
Score = 32.0 bits (71), Expect = 1.6
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 10/104 (9%)
Query: 327 TRYLTLNASQITNLRSFIHKVTPHRCTQGDTDNPPLYCNP-KDNSTIRALFPSL-----G 380
T L N S + S+I +V C++GD D+ L+C+ DN I L P L G
Sbjct: 242 TMQLRKNHSSAQFIDSYICQV----CSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRG 297
Query: 381 TYDLEKAILNISKAMEQEFSATKQTLEAHQSKVSSLASASRKDH 424
+ K IL K + F + T E +A + + D+
Sbjct: 298 IWRCPKCILAECKQPPEAFGFEQATQEYSLQSFGEMADSFKSDY 341
>gi|33356560 jumonji, AT rich interactive domain 1D isoform 2 [Homo
sapiens]
Length = 1539
Score = 32.0 bits (71), Expect = 1.6
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 10/104 (9%)
Query: 327 TRYLTLNASQITNLRSFIHKVTPHRCTQGDTDNPPLYCNP-KDNSTIRALFPSL-----G 380
T L N S + S+I +V C++GD D+ L+C+ DN I L P L G
Sbjct: 299 TMQLRKNHSSAQFIDSYICQV----CSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRG 354
Query: 381 TYDLEKAILNISKAMEQEFSATKQTLEAHQSKVSSLASASRKDH 424
+ K IL K + F + T E +A + + D+
Sbjct: 355 IWRCPKCILAECKQPPEAFGFEQATQEYSLQSFGEMADSFKSDY 398
>gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [Homo
sapiens]
Length = 1570
Score = 32.0 bits (71), Expect = 1.6
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 10/104 (9%)
Query: 327 TRYLTLNASQITNLRSFIHKVTPHRCTQGDTDNPPLYCNP-KDNSTIRALFPSL-----G 380
T L N S + S+I +V C++GD D+ L+C+ DN I L P L G
Sbjct: 299 TMQLRKNHSSAQFIDSYICQV----CSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRG 354
Query: 381 TYDLEKAILNISKAMEQEFSATKQTLEAHQSKVSSLASASRKDH 424
+ K IL K + F + T E +A + + D+
Sbjct: 355 IWRCPKCILAECKQPPEAFGFEQATQEYSLQSFGEMADSFKSDY 398
>gi|31542280 hypothetical protein LOC221481 [Homo sapiens]
Length = 367
Score = 32.0 bits (71), Expect = 1.6
Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
Query: 8 ALLQLTLTAFLTILVQPQHLLAPVFRTLSILTNQSNCWLCEHLDNAEQPELVFVPASAST 67
AL+++ + ++ VQ LL+ + + +L + NC + + N QP
Sbjct: 220 ALMEILQSDYILAQVQAVRLLSYLAQKNDLLYDILNCQVHSNFLNLFQP----------- 268
Query: 68 WWTYSGQWMYERVWYPQAEVQNHSTSSYRKVTWHWEASMEAQGLSFAQVRLLEGNFSLCV 127
T SG +YE + + + + + Y V WH+ + L + RL + +L +
Sbjct: 269 --TQSGSLLYEVLVFAERLSEGRNAPHYHVVKWHYNEQSLHESLFGEESRLADRLLALVI 326
>gi|154350244 hypothetical protein LOC79632 isoform 2 [Homo sapiens]
Length = 971
Score = 31.2 bits (69), Expect = 2.6
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 383 DLEKAILNISKAMEQEFSATKQTLEAHQSKVSSLASASRKDHVLDIPTTQR-QTACGTVG 441
+ + A+LN+ +EQE ++T+ A K + H L+I T+ + C +
Sbjct: 476 ETKDALLNVEGELEQERQQHEETIAA--MKEEEKLKVDKMAHDLEIKWTENLRQECSKLR 533
Query: 442 KQCCLYINYSEEIKSNIQRLHEASENLKNVPLLDWQ 477
++ L + + E+ KS + +L + + KN WQ
Sbjct: 534 EE--LRLQHEEDKKSAMSQLLQLKDREKNAARDSWQ 567
>gi|154350226 hypothetical protein LOC79632 isoform 1 [Homo sapiens]
Length = 1140
Score = 31.2 bits (69), Expect = 2.6
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 383 DLEKAILNISKAMEQEFSATKQTLEAHQSKVSSLASASRKDHVLDIPTTQR-QTACGTVG 441
+ + A+LN+ +EQE ++T+ A K + H L+I T+ + C +
Sbjct: 596 ETKDALLNVEGELEQERQQHEETIAA--MKEEEKLKVDKMAHDLEIKWTENLRQECSKLR 653
Query: 442 KQCCLYINYSEEIKSNIQRLHEASENLKNVPLLDWQ 477
++ L + + E+ KS + +L + + KN WQ
Sbjct: 654 EE--LRLQHEEDKKSAMSQLLQLKDREKNAARDSWQ 687
>gi|165932370 FAT tumor suppressor homolog 4 [Homo sapiens]
Length = 4981
Score = 30.4 bits (67), Expect = 4.5
Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 16/119 (13%)
Query: 137 LGNIPKQYCNQILWFDSTDGTFMPSIDVTNESRNDDDDTSVCLGTRQCSWFAGCTNRTWN 196
L +IP C+ STDGTF D+T S ND ++V R +FAG +N T +
Sbjct: 3658 LFSIPGGTCDLNSQPRSTDGTF----DLTVLS-NDGVHSTVTSNIRV--FFAGFSNATVD 3710
Query: 197 SSAVPLIGLPNTQDYKWVD-------RNSGLTWSGNDTCLYSC--QNQTKGLLYQLFRN 246
+S + +G+P +D+ +S LT G LYS +N LL + RN
Sbjct: 3711 NSILLRLGVPTVKDFLTNHYLHFLRIASSQLTGLGTAVQLYSAYEENNRTFLLAAVKRN 3769
>gi|50659091 scavenger receptor cysteine-rich type 1 precursor [Homo
sapiens]
Length = 1453
Score = 30.4 bits (67), Expect = 4.5
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 31/133 (23%)
Query: 175 TSVCLGTRQCS----WFAGCTNRTWNSSAVPLI-------------GLPNTQ---DYKWV 214
T+ C+G + W C ++ WN++A ++ GLP+ Q D W+
Sbjct: 268 TNRCMGRVELKIQGRWGTVCHHK-WNNAAADVVCKQLGCGTALHFAGLPHLQSGSDVVWL 326
Query: 215 DRNSGLTWSGNDTCLYSCQNQ---TKGLLYQLFRNLFCSYGLTEAHGKWRCADASITNDK 271
D G++ SGN++ L+ C++ L+Q ++ CS G A + R AD S N
Sbjct: 327 D---GVSCSGNESFLWDCRHSGTVNFDCLHQNDVSVICSDG---ADLELRLADGS-NNCS 379
Query: 272 GHDGHRTPTWWLT 284
G R W T
Sbjct: 380 GRVEVRIHEQWWT 392
>gi|223633941 hypothetical protein LOC389730 [Homo sapiens]
Length = 1343
Score = 29.6 bits (65), Expect = 7.7
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 74 QWMYERVWYPQAEVQNHSTSSYRKVTWHWEASMEAQGLSFAQVRLLEGNFSLC 126
QW++ + A V S + + + + +S EAQGL A ++L+ SLC
Sbjct: 1168 QWIFSKKKSKPAPVTAESQKTVKNRSCVYSSSAEAQGLMTAVGQMLDKKMSLC 1220
>gi|91206406 hypothetical protein LOC642265 [Homo sapiens]
Length = 1347
Score = 29.6 bits (65), Expect = 7.7
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 74 QWMYERVWYPQAEVQNHSTSSYRKVTWHWEASMEAQGLSFAQVRLLEGNFSLC 126
QW++ + A V S + + + + +S EAQGL A ++L+ SLC
Sbjct: 1172 QWIFSKKKSKPAPVTAESQKTVKNRSCVYSSSAEAQGLMTAVGQMLDEKMSLC 1224
>gi|51243032 oxysterol-binding protein-like protein 8 isoform b
[Homo sapiens]
Length = 847
Score = 29.6 bits (65), Expect = 7.7
Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 3/113 (2%)
Query: 381 TYDLEKAILNISKAMEQEFSATKQTLEAHQSKVSSLASASRKDHVLDIPTTQRQTACGTV 440
T DL + L+ + Q F K+ + ++ + S S S+ + L + + + +
Sbjct: 14 TKDLHQPSLSPASPHSQGFERGKEDISQNKDESSLSMSKSKSESKLYNGSEKDSSTSSKL 73
Query: 441 GKQCCLYI---NYSEEIKSNIQRLHEASENLKNVPLLDWQGIFAKVGDWFRSW 490
K+ L + NY EE K + L + + + DW I + W + W
Sbjct: 74 TKKESLKVQKKNYREEKKRATKELLSTITDPSVIVMADWLKIRGTLKSWTKLW 126
>gi|18079218 oxysterol-binding protein-like protein 8 isoform a
[Homo sapiens]
Length = 889
Score = 29.6 bits (65), Expect = 7.7
Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 3/113 (2%)
Query: 381 TYDLEKAILNISKAMEQEFSATKQTLEAHQSKVSSLASASRKDHVLDIPTTQRQTACGTV 440
T DL + L+ + Q F K+ + ++ + S S S+ + L + + + +
Sbjct: 56 TKDLHQPSLSPASPHSQGFERGKEDISQNKDESSLSMSKSKSESKLYNGSEKDSSTSSKL 115
Query: 441 GKQCCLYI---NYSEEIKSNIQRLHEASENLKNVPLLDWQGIFAKVGDWFRSW 490
K+ L + NY EE K + L + + + DW I + W + W
Sbjct: 116 TKKESLKVQKKNYREEKKRATKELLSTITDPSVIVMADWLKIRGTLKSWTKLW 168
>gi|133892686 hypothetical protein LOC727830 [Homo sapiens]
Length = 1347
Score = 29.6 bits (65), Expect = 7.7
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 74 QWMYERVWYPQAEVQNHSTSSYRKVTWHWEASMEAQGLSFAQVRLLEGNFSLC 126
QW++ + A V S + + + + +S EAQGL A ++L+ SLC
Sbjct: 1172 QWIFSKKKSKPAPVTAESQKTVKNRSCVYSSSAEAQGLMTAVGQMLDEKMSLC 1224
>gi|146231958 hypothetical protein LOC647060 [Homo sapiens]
Length = 1347
Score = 29.6 bits (65), Expect = 7.7
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 74 QWMYERVWYPQAEVQNHSTSSYRKVTWHWEASMEAQGLSFAQVRLLEGNFSLC 126
QW++ + A V S + + + + +S EAQGL A ++L+ SLC
Sbjct: 1172 QWIFSKKKSKPAPVTAESQKTVKNRSCVYSSSAEAQGLMTAVGQMLDEKMSLC 1224
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.133 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,820,533
Number of Sequences: 37866
Number of extensions: 971552
Number of successful extensions: 2291
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2268
Number of HSP's gapped (non-prelim): 35
length of query: 563
length of database: 18,247,518
effective HSP length: 107
effective length of query: 456
effective length of database: 14,195,856
effective search space: 6473310336
effective search space used: 6473310336
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.