ERV3 4134

Name: ERV3	Sequence: fasta or formatted (604aa)		NCBI GI: 145651814
Description: endogenous retroviral sequence 3		Referenced in: DNA Transposon and Retrovirus-related Sequences
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.5 33 1 C cysteine 3.8 23 2 D aspartate 3.1 19 2 E glutamate 5.5 33 2 F phenylalanine 3.1 19 2 G glycine 7.3 44 2 H histidine 2.0 12 1 I isoleucine 5.5 33 2 K lysine 5.1 31 2 L leucine 9.9 60 3 M methionine 2.5 15 1 N asparagine 4.3 26 2 P proline 7.0 42 3 Q glutamine 4.8 29 2 R arginine 3.3 20 1 S serine 7.3 44 2 T threonine 7.9 48 2 V valine 4.1 25 2 W tryptophan 3.3 20 1 Y tyrosine 4.6 28 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 endogenous retroviral sequence 3 HERV-FRD 0.027 syncytin 2 ERVWE1 0.018 syncytin precursor ERVWE1 0.018 syncytin precursor LOC100293101 0.016 PREDICTED: similar to Uncharacterized protein LP905... LOC100290734 0.016 PREDICTED: hypothetical protein XP_002346661 LOC100288413 0.016 PREDICTED: hypothetical protein XP_002342492 LOC100292811 0.006 PREDICTED: similar to proprotein convertase subtili... LOC100290671 0.006 PREDICTED: hypothetical protein XP_002347099 LOC100289618 0.006 PREDICTED: hypothetical protein XP_002342982 NCOA1 0.004 nuclear receptor coactivator 1 isoform 2 NCOA1 0.004 nuclear receptor coactivator 1 isoform 3 NCOA1 0.004 nuclear receptor coactivator 1 isoform 1 DNAH2 0.004 dynein heavy chain domain 3 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.