| Name: HERV-FRD | Sequence: fasta or formatted (538aa) | NCBI GI: 46485773 | |
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Description: syncytin 2
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Referenced in: DNA Transposon and Retrovirus-related Sequences
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Composition:
Amino acid Percentage Count Longest homopolymer A alanine 6.3 34 2 C cysteine 3.0 16 2 D aspartate 2.6 14 1 E glutamate 2.6 14 1 F phenylalanine 4.5 24 2 G glycine 6.5 35 2 H histidine 1.7 9 1 I isoleucine 6.3 34 1 K lysine 3.3 18 1 L leucine 12.5 67 6 M methionine 1.5 8 1 N asparagine 5.6 30 2 P proline 6.9 37 2 Q glutamine 6.5 35 2 R arginine 4.5 24 2 S serine 8.6 46 3 T threonine 8.9 48 2 V valine 3.7 20 2 W tryptophan 2.4 13 1 Y tyrosine 2.2 12 1 |
Comparative genomics:
Search single species RefSeq proteins at NCBI
Search summary 
Figure data | ||
Related human proteins:Protein Relative score Description Self-match 1.000 syncytin 2 ERVWE1 0.150 syncytin precursor ERVWE1 0.150 syncytin precursor LOC100293101 0.044 PREDICTED: similar to Uncharacterized protein LP905... LOC100290734 0.044 PREDICTED: hypothetical protein XP_002346661 LOC100288413 0.044 PREDICTED: hypothetical protein XP_002342492 ERV3 0.031 endogenous retroviral sequence 3 ISM2 0.007 isthmin 2 homolog isoform 3 ISM2 0.007 isthmin 2 homolog isoform 1 DNAH5 0.006 dynein, axonemal, heavy chain 5 ARHGAP10 0.005 Rho GTPase activating protein 10 RAD54L2 0.005 RAD54-like 2 GRHPR 0.004 glyoxylate reductase/hydroxypyruvate reductase WTIP 0.004 Wilms tumor 1 interacting proteinHuman BLASTP results (used to prepare the table) | |||
Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.
See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.
