Guide to the Human Genome
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Name: LOC100288413 Sequence: fasta or formatted (563aa) NCBI GI: 239742330
Description:

PREDICTED: hypothetical protein XP_002342492

Referenced in:

DNA Transposon and Retrovirus-related Sequences

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         29           1
 C cysteine            3.6         20           2
 D aspartate           4.1         23           4
 E glutamate           3.6         20           2
 F phenylalanine       4.1         23           2
 G glycine             6.0         34           1
 H histidine           2.3         13           1
 I isoleucine          3.6         20           1
 K lysine              3.9         22           1
 L leucine            12.1         68           2
 M methionine          1.1          6           1
 N asparagine          6.6         37           2
 P proline             4.1         23           2
 Q glutamine           5.9         33           2
 R arginine            4.4         25           2
 S serine              9.8         55           2
 T threonine           7.8         44           2
 V valine              5.2         29           1
 W tryptophan          3.4         19           2
 Y tyrosine            3.6         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342492 
LOC100293101          1.000   PREDICTED: similar to Uncharacterized protein LP905...
LOC100290734          1.000   PREDICTED: hypothetical protein XP_002346661 
HERV-FRD              0.042   syncytin 2 
ERVWE1                0.027   syncytin precursor 
ERVWE1                0.027   syncytin precursor 
ERV3                  0.017   endogenous retroviral sequence 3 
FCRL6                 0.007   Fc receptor-like 6 
SLC5A10               0.006   solute carrier family 5 (sodium/glucose cotransport...
SLC5A10               0.006   solute carrier family 5 (sodium/glucose cotransport...
KDM5D                 0.006   jumonji, AT rich interactive domain 1D isoform 3 [H...
KDM5D                 0.006   jumonji, AT rich interactive domain 1D isoform 2 [Ho...
KDM5D                 0.006   jumonji, AT rich interactive domain 1D isoform 1 [H...
C6orf81               0.006   hypothetical protein LOC221481 
FAM184A               0.005   hypothetical protein LOC79632 isoform 2 
FAM184A               0.005   hypothetical protein LOC79632 isoform 1 
FAT4                  0.004   FAT tumor suppressor homolog 4 
CD163L1               0.004   scavenger receptor cysteine-rich type 1 precursor [H...
FAM75A6               0.004   hypothetical protein LOC389730 
FAM75A2               0.004   hypothetical protein LOC642265 
OSBPL8                0.004   oxysterol-binding protein-like protein 8 isoform b [...
OSBPL8                0.004   oxysterol-binding protein-like protein 8 isoform a [...
FAM75A3               0.004   hypothetical protein LOC727830 
FAM75A1               0.004   hypothetical protein LOC647060 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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