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Search of human proteins with 239748329
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748329 PREDICTED: hypothetical protein [Homo sapiens]
(70 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753767 PREDICTED: hypothetical protein [Homo sapiens] 147 1e-36
gi|239748329 PREDICTED: hypothetical protein [Homo sapiens] 147 1e-36
gi|239742230 PREDICTED: hypothetical protein [Homo sapiens] 147 1e-36
gi|40806175 diacylglycerol kinase, theta [Homo sapiens] 31 0.24
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 30 0.41
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof... 30 0.41
gi|171543895 ataxin 2 [Homo sapiens] 30 0.53
gi|12707580 paired-like homeobox 2b [Homo sapiens] 29 0.70
gi|226371735 iroquois homeobox 3 [Homo sapiens] 29 0.70
gi|119395760 diaphanous 1 isoform 2 [Homo sapiens] 29 0.91
gi|119395758 diaphanous 1 isoform 1 [Homo sapiens] 29 0.91
gi|169167813 PREDICTED: hypothetical protein [Homo sapiens] 29 0.91
gi|169167899 PREDICTED: hypothetical protein [Homo sapiens] 29 0.91
gi|169167609 PREDICTED: hypothetical protein [Homo sapiens] 29 0.91
gi|55741677 SET domain containing 1A [Homo sapiens] 29 0.91
gi|31652259 melanoma ubiquitous mutated protein [Homo sapiens] 29 0.91
gi|4502365 NK3 homeobox 2 [Homo sapiens] 29 0.91
gi|239756641 PREDICTED: similar to hCG2042536 [Homo sapiens] 28 1.2
gi|113426528 PREDICTED: similar to hCG2042536 [Homo sapiens] 28 1.2
gi|113426210 PREDICTED: similar to hCG2042536 [Homo sapiens] 28 1.2
gi|239753324 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|239744249 PREDICTED: similar to double homeobox, 4 [Homo sapi... 28 1.6
gi|239744248 PREDICTED: similar to double homeobox, 4 [Homo sapi... 28 1.6
gi|239744246 PREDICTED: hypothetical protein XP_002343082 [Homo ... 28 1.6
gi|239744244 PREDICTED: similar to double homeobox, 4 [Homo sapi... 28 1.6
gi|239744242 PREDICTED: similar to double homeobox, 4 [Homo sapi... 28 1.6
gi|239744240 PREDICTED: similar to double homeobox, 4 [Homo sapi... 28 1.6
gi|169164483 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0
gi|113414226 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0
gi|113413437 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0
>gi|239753767 PREDICTED: hypothetical protein [Homo sapiens]
Length = 70
Score = 147 bits (372), Expect = 1e-36
Identities = 70/70 (100%), Positives = 70/70 (100%)
Query: 1 MKRKRRNGSRQPSSADREPRGRGAICIPVCGGSGMLVTGPVPGGSPPPAGVGKDPFHLSA 60
MKRKRRNGSRQPSSADREPRGRGAICIPVCGGSGMLVTGPVPGGSPPPAGVGKDPFHLSA
Sbjct: 1 MKRKRRNGSRQPSSADREPRGRGAICIPVCGGSGMLVTGPVPGGSPPPAGVGKDPFHLSA 60
Query: 61 AEEALAAPRL 70
AEEALAAPRL
Sbjct: 61 AEEALAAPRL 70
>gi|239748329 PREDICTED: hypothetical protein [Homo sapiens]
Length = 70
Score = 147 bits (372), Expect = 1e-36
Identities = 70/70 (100%), Positives = 70/70 (100%)
Query: 1 MKRKRRNGSRQPSSADREPRGRGAICIPVCGGSGMLVTGPVPGGSPPPAGVGKDPFHLSA 60
MKRKRRNGSRQPSSADREPRGRGAICIPVCGGSGMLVTGPVPGGSPPPAGVGKDPFHLSA
Sbjct: 1 MKRKRRNGSRQPSSADREPRGRGAICIPVCGGSGMLVTGPVPGGSPPPAGVGKDPFHLSA 60
Query: 61 AEEALAAPRL 70
AEEALAAPRL
Sbjct: 61 AEEALAAPRL 70
>gi|239742230 PREDICTED: hypothetical protein [Homo sapiens]
Length = 70
Score = 147 bits (372), Expect = 1e-36
Identities = 70/70 (100%), Positives = 70/70 (100%)
Query: 1 MKRKRRNGSRQPSSADREPRGRGAICIPVCGGSGMLVTGPVPGGSPPPAGVGKDPFHLSA 60
MKRKRRNGSRQPSSADREPRGRGAICIPVCGGSGMLVTGPVPGGSPPPAGVGKDPFHLSA
Sbjct: 1 MKRKRRNGSRQPSSADREPRGRGAICIPVCGGSGMLVTGPVPGGSPPPAGVGKDPFHLSA 60
Query: 61 AEEALAAPRL 70
AEEALAAPRL
Sbjct: 61 AEEALAAPRL 70
>gi|40806175 diacylglycerol kinase, theta [Homo sapiens]
Length = 942
Score = 30.8 bits (68), Expect = 0.24
Identities = 15/33 (45%), Positives = 15/33 (45%)
Query: 19 PRGRGAICIPVCGGSGMLVTGPVPGGSPPPAGV 51
PR C PV G G GP PG P AGV
Sbjct: 18 PRPGSPACSPVLGSGGRARPGPGPGPGPERAGV 50
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 30.0 bits (66), Expect = 0.41
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 12 PSSADREPRGRGAICIPVCGGSGMLVTGPVP-----GGSPPPAGVGKDP 55
PS P+GRG + + + P GG PPP G G P
Sbjct: 137 PSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPP 185
>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isoform
B [Homo sapiens]
Length = 231
Score = 30.0 bits (66), Expect = 0.41
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 12 PSSADREPRGRGAICIPVCGGSGMLVTGPVP-----GGSPPPAGVGKDP 55
PS P+GRG + + + P GG PPP G G P
Sbjct: 137 PSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPP 185
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 29.6 bits (65), Expect = 0.53
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 32 GSGMLVTGPVPGGSPPPAGVGKDPFHLSAAEEA 64
G G GP P +PPP G G P S+ A
Sbjct: 41 GGGGAAPGPYPSAAPPPPGPGPPPSRQSSPPSA 73
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 29.3 bits (64), Expect = 0.70
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 28 PVCGGSGMLVTGPVPGGSP---PPAGVGKDPFHLSAAEEALAA 67
P CG +G GP P G+P P G G +P AA A AA
Sbjct: 206 PSCGANGGGGGGPSPAGAPGAAGPGGPGGEPGKGGAAAAAAAA 248
>gi|226371735 iroquois homeobox 3 [Homo sapiens]
Length = 501
Score = 29.3 bits (64), Expect = 0.70
Identities = 16/31 (51%), Positives = 16/31 (51%)
Query: 40 PVPGGSPPPAGVGKDPFHLSAAEEALAAPRL 70
P GGSPP A V LS A A AA RL
Sbjct: 367 PGAGGSPPGAAVAPSALQLSPAAAAAAAHRL 397
>gi|119395760 diaphanous 1 isoform 2 [Homo sapiens]
Length = 1263
Score = 28.9 bits (63), Expect = 0.91
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 28 PVCGGSGMLVTGPVPGGS---PPPAGVGKDP 55
P+ GG G+ P PGG PPP G+G P
Sbjct: 710 PLPGGPGIPPPPPFPGGPGIPPPPPGMGMPP 740
>gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]
Length = 1272
Score = 28.9 bits (63), Expect = 0.91
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 28 PVCGGSGMLVTGPVPGGS---PPPAGVGKDP 55
P+ GG G+ P PGG PPP G+G P
Sbjct: 719 PLPGGPGIPPPPPFPGGPGIPPPPPGMGMPP 749
>gi|169167813 PREDICTED: hypothetical protein [Homo sapiens]
Length = 260
Score = 28.9 bits (63), Expect = 0.91
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 2 KRKRRNGSRQPS----SADREPRGRGAICIPVCGGSGMLVTGPVPGGSPPP 48
+RK + SR P+ S + R R +C G GP PG PPP
Sbjct: 63 QRKIKPDSRSPTPVPPSFASDQRARVRVCAGANGAGASGPRGPSPGSPPPP 113
>gi|169167899 PREDICTED: hypothetical protein [Homo sapiens]
Length = 260
Score = 28.9 bits (63), Expect = 0.91
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 2 KRKRRNGSRQPS----SADREPRGRGAICIPVCGGSGMLVTGPVPGGSPPP 48
+RK + SR P+ S + R R +C G GP PG PPP
Sbjct: 63 QRKIKPDSRSPTPVPPSFASDQRARVRVCAGANGAGASGPRGPSPGSPPPP 113
>gi|169167609 PREDICTED: hypothetical protein [Homo sapiens]
Length = 260
Score = 28.9 bits (63), Expect = 0.91
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 2 KRKRRNGSRQPS----SADREPRGRGAICIPVCGGSGMLVTGPVPGGSPPP 48
+RK + SR P+ S + R R +C G GP PG PPP
Sbjct: 63 QRKIKPDSRSPTPVPPSFASDQRARVRVCAGANGAGASGPRGPSPGSPPPP 113
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 28.9 bits (63), Expect = 0.91
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 8 GSRQPSSADREPRGRGAI-CIPVCGGSGMLVTGPVPGGSPPPA 49
GS +P + P+ G P G M ++ GGSPPPA
Sbjct: 555 GSGEPGATRESPKANGQNQASPCSSGDDMEISDDDRGGSPPPA 597
>gi|31652259 melanoma ubiquitous mutated protein [Homo sapiens]
Length = 711
Score = 28.9 bits (63), Expect = 0.91
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 12/71 (16%)
Query: 2 KRKRRNGSRQPSSADREPRGRGAICIPVCGGSGMLVTGPVPGGSPPP---AGVGKDPFHL 58
KR R +GS++P + EP GA P GP P S P A +G P H
Sbjct: 302 KRPRLDGSQRPPAVQLEPMAAGAAPSP--------GPGPGPRESVTPRSTARLGPPPSHA 353
Query: 59 SA-AEEALAAP 68
SA A L P
Sbjct: 354 SADATRCLPCP 364
>gi|4502365 NK3 homeobox 2 [Homo sapiens]
Length = 333
Score = 28.9 bits (63), Expect = 0.91
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 14/63 (22%)
Query: 7 NGSRQPSSADREPRGRGAICIPVCGGSGMLVTGPVPGGSPPPAGVGKDPFHLSAAEEALA 66
+G R P + D RGA +C G+G GG PAGV ++ EE A
Sbjct: 155 SGDRSPRTEDDGVGPRGAHVSALCSGAG-------GGGGSGPAGVAEE-------EEEPA 200
Query: 67 APR 69
AP+
Sbjct: 201 APK 203
>gi|239756641 PREDICTED: similar to hCG2042536 [Homo sapiens]
Length = 556
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 29 VCGGSGMLVTGPVPGGSPPPAG--VGKDPFHLSAAEEALAA 67
VC G G+ GP+ SP A + + FH AA +LAA
Sbjct: 447 VCAGQGLTRQGPMSWSSPVAAATKMNRRCFHYDAAPPSLAA 487
>gi|113426528 PREDICTED: similar to hCG2042536 [Homo sapiens]
Length = 847
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 29 VCGGSGMLVTGPVPGGSPPPAG--VGKDPFHLSAAEEALAA 67
VC G G+ GP+ SP A + + FH AA +LAA
Sbjct: 738 VCAGQGLTRQGPMSWSSPVAAATKMNRRCFHYDAAPPSLAA 778
>gi|113426210 PREDICTED: similar to hCG2042536 [Homo sapiens]
Length = 847
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 29 VCGGSGMLVTGPVPGGSPPPAG--VGKDPFHLSAAEEALAA 67
VC G G+ GP+ SP A + + FH AA +LAA
Sbjct: 738 VCAGQGLTRQGPMSWSSPVAAATKMNRRCFHYDAAPPSLAA 778
>gi|239753324 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 5 RRNGSRQPSSADREPRGRGAICIPVCGGSGMLVTGPVPGGSPPPAGVG 52
R + R P A P GR + P+C GS L T P P SP A G
Sbjct: 55 RTHSRRHPDHAP--PPGRPSCSRPLCAGSSCLAT-PEPARSPSIAEPG 99
>gi|239744249 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 11/69 (15%)
Query: 11 QPSSADREPRGRGAICIPVCGGS-------GMLVTG----PVPGGSPPPAGVGKDPFHLS 59
QP A P+G+G + P GS G V G P G +PPP D
Sbjct: 346 QPGPAQAGPQGQGVLAPPTSQGSPWWGWGRGPQVAGAAWEPQAGAAPPPQPAPPDASARQ 405
Query: 60 AAEEALAAP 68
+ + AP
Sbjct: 406 GQMQGIPAP 414
>gi|239744248 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 11/69 (15%)
Query: 11 QPSSADREPRGRGAICIPVCGGS-------GMLVTG----PVPGGSPPPAGVGKDPFHLS 59
QP A P+G+G + P GS G V G P G +PPP D
Sbjct: 346 QPGPAQAGPQGQGVLAPPTSQGSPWWGWGRGPQVAGAAWEPQAGAAPPPQPAPPDASARQ 405
Query: 60 AAEEALAAP 68
+ + AP
Sbjct: 406 GQMQGIPAP 414
>gi|239744246 PREDICTED: hypothetical protein XP_002343082 [Homo
sapiens]
Length = 483
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 11/69 (15%)
Query: 11 QPSSADREPRGRGAICIPVCGGS-------GMLVTG----PVPGGSPPPAGVGKDPFHLS 59
QP A P+G+G + P GS G V G P G +PPP D
Sbjct: 346 QPGPAQAGPQGQGVLAPPTSQGSPWWGWGRGPQVAGAAWEPQAGAAPPPQPAPPDASARQ 405
Query: 60 AAEEALAAP 68
+ + AP
Sbjct: 406 GQMQGIPAP 414
>gi|239744244 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 11/69 (15%)
Query: 11 QPSSADREPRGRGAICIPVCGGS-------GMLVTG----PVPGGSPPPAGVGKDPFHLS 59
QP A P+G+G + P GS G V G P G +PPP D
Sbjct: 346 QPGPAQAGPQGQGVLAPPTSQGSPWWGWGRGPQVAGAAWEPQAGAAPPPQPAPPDASARQ 405
Query: 60 AAEEALAAP 68
+ + AP
Sbjct: 406 GQMQGIPAP 414
>gi|239744242 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 11/69 (15%)
Query: 11 QPSSADREPRGRGAICIPVCGGS-------GMLVTG----PVPGGSPPPAGVGKDPFHLS 59
QP A P+G+G + P GS G V G P G +PPP D
Sbjct: 346 QPGPAQAGPQGQGVLAPPTSQGSPWWGWGRGPQVAGAAWEPQAGAAPPPQPAPPDASARQ 405
Query: 60 AAEEALAAP 68
+ + AP
Sbjct: 406 GQMQGIPAP 414
>gi|239744240 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 483
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 11/69 (15%)
Query: 11 QPSSADREPRGRGAICIPVCGGS-------GMLVTG----PVPGGSPPPAGVGKDPFHLS 59
QP A P+G+G + P GS G V G P G +PPP D
Sbjct: 346 QPGPAQAGPQGQGVLAPPTSQGSPWWGWGRGPQVAGAAWEPQAGAAPPPQPAPPDASARQ 405
Query: 60 AAEEALAAP 68
+ + AP
Sbjct: 406 GQMQGIPAP 414
>gi|169164483 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 27.7 bits (60), Expect = 2.0
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 6 RNGSRQPSSADREPRG-RGAICIPVCGGSGMLV---TGPVPGGSPP 47
R+ ++Q R PRG RG P G G TGP P G+PP
Sbjct: 159 RDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPTGPRPTGAPP 204
>gi|113414226 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 27.7 bits (60), Expect = 2.0
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 6 RNGSRQPSSADREPRG-RGAICIPVCGGSGMLV---TGPVPGGSPP 47
R+ ++Q R PRG RG P G G TGP P G+PP
Sbjct: 159 RDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPTGPRPTGAPP 204
>gi|113413437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 27.7 bits (60), Expect = 2.0
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 6 RNGSRQPSSADREPRG-RGAICIPVCGGSGMLV---TGPVPGGSPP 47
R+ ++Q R PRG RG P G G TGP P G+PP
Sbjct: 159 RDSAQQRRRPTRRPRGTRGGARRPGVRGQGAAAVGPTGPRPTGAPP 204
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.137 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,116,904
Number of Sequences: 37866
Number of extensions: 245235
Number of successful extensions: 1051
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 988
Number of HSP's gapped (non-prelim): 113
length of query: 70
length of database: 18,247,518
effective HSP length: 43
effective length of query: 27
effective length of database: 16,619,280
effective search space: 448720560
effective search space used: 448720560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.