Guide to the Human Genome
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Name: LOC440995 Sequence: fasta or formatted (70aa) NCBI GI: 239742230
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {70aa} PREDICTED: hypothetical protein
alt mRNA {70aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4          8           2
 C cysteine            2.9          2           1
 D aspartate           2.9          2           1
 E glutamate           4.3          3           2
 F phenylalanine       1.4          1           1
 G glycine            15.7         11           2
 H histidine           1.4          1           1
 I isoleucine          2.9          2           1
 K lysine              4.3          3           1
 L leucine             5.7          4           1
 M methionine          2.9          2           1
 N asparagine          1.4          1           1
 P proline            14.3         10           3
 Q glutamine           1.4          1           1
 R arginine           11.4          8           2
 S serine              8.6          6           2
 T threonine           1.4          1           1
 V valine              5.7          4           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC440995             1.000   PREDICTED: hypothetical protein 
LOC440995             1.000   PREDICTED: hypothetical protein 
DGKQ                  0.049   diacylglycerol kinase, theta 
SNRPB                 0.041   small nuclear ribonucleoprotein polypeptide B/B' iso...
SNRPB                 0.041   small nuclear ribonucleoprotein polypeptide B/B' isof...
ATXN2                 0.041   ataxin 2 
PHOX2B                0.033   paired-like homeobox 2b 
IRX3                  0.033   iroquois homeobox 3 
DIAPH1                0.033   diaphanous 1 isoform 2 
DIAPH1                0.033   diaphanous 1 isoform 1 
LOC100129630          0.033   PREDICTED: hypothetical protein 
LOC100129630          0.033   PREDICTED: hypothetical protein 
LOC100129630          0.033   PREDICTED: hypothetical protein 
SETD1A                0.033   SET domain containing 1A 
MUM1                  0.033   melanoma ubiquitous mutated protein 
NKX3-2                0.033   NK3 homeobox 2 
LOC123855             0.025   PREDICTED: similar to hCG2042536 
LOC123855             0.025   PREDICTED: similar to hCG2042536 
LOC123855             0.025   PREDICTED: similar to hCG2042536 
LOC100134240          0.025   PREDICTED: hypothetical protein 
LOC440017             0.025   PREDICTED: similar to double homeobox, 4 
LOC728022             0.025   PREDICTED: similar to double homeobox, 4 
LOC100289581          0.025   PREDICTED: hypothetical protein XP_002343082 
LOC440014             0.025   PREDICTED: similar to double homeobox, 4 
LOC399839             0.025   PREDICTED: similar to double homeobox, 4 
LOC440013             0.025   PREDICTED: similar to double homeobox, 4 
LOC729570             0.025   PREDICTED: hypothetical protein 
LOC729570             0.025   PREDICTED: hypothetical protein 
LOC729570             0.025   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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